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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.283914 (59 seq.)
>W1711043885
LRMP01000003
Actinomycetota
Brachybacterium sp. sponge [LRMP]
186779
186704
-
His
GTG
[ENA]
¡û
>W1711185735
LWNQ01000015
Actinomycetota
Dermabacter sp. HMSC08H10 [LWNQ]
115363
115438
+
His
GTG
[ENA]
¡û
>W1711186262
LWOB01000316
Actinomycetota
Brachybacterium sp. HMSC06H03 [LWOB]
7003
7078
+
His
GTG
[ENA]
¡û
>W1711186352
LWOD01000031
Actinomycetota
Dermabacter sp. HMSC06F07 [LWOD]
523513
523438
-
His
GTG
[ENA]
¡û
>C171060454
CP017297
Actinomycetota
Brachybacterium sp. P6-10-X1 [CP017297]
1296516
1296591
+
His
GTG
-
¡û
>W131098131
AORC01000019
Actinomycetota
Brachybacterium muris UCD-AY4 [AORC]
22929
22854
-
His
GTG
[ENA]
¡û
>W131206296
ATFO01000008
Actinomycetota
Dermabacter sp. HFH0086 [ATFO]
579858
579783
-
His
GTG
[ENA]
¡û
>WENV180312587
OBJZ01000011
[OBJZ] human gut metagenome; fecal sample
5968
6042
+
His
GTG
[ENA]
¢þ
>WENV180554442
OCJN01001446
[OCJN] human skin metagenome; Infant 1 DOL 23 skin
557
483
-
His
GTG
[ENA]
¢þ
>WENV182812856
OJXV01000172
[OJXV] human gut metagenome; human gut
4890
4816
-
His
GTG
[ENA]
¢þ
>WENV182820669
OKAO01002164
[OKAO] human gut metagenome; human gut
80
154
+
His
GTG
[ENA]
¢þ
>WENV182821237
OKAT01000515
[OKAT] human gut metagenome; human gut
178
252
+
His
GTG
[ENA]
¢þ
>WENV182825596
OKCK01001330
[OKCK] human gut metagenome; human gut
35
109
+
His
GTG
[ENA]
¢þ
>WENV182831685
OKEG01000142
[OKEG] human gut metagenome; human gut
10728
10802
+
His
GTG
[ENA]
¢þ
>WENV182839067
OKGZ01001483
[OKGZ] human gut metagenome; human gut
1266
1192
-
His
GTG
[ENA]
¢þ
>WENV182849726
OKKT01001951
[OKKT] human gut metagenome; human gut
4
78
+
His
GTG
[ENA]
¢þ
>WENV182855168
OKMY01000201
[OKMY] human gut metagenome; human gut
1745
1671
-
His
GTG
[ENA]
¢þ
>WENV183511960
OMJG01023528
[OMJG] food metagenome; Cotija cheese
496
422
-
His
GTG
[ENA]
¢þ
>W141400453
JDRS01000023
Actinomycetota
Dermabacter hominis 1368 [JDRS]
5338
5413
+
His
GTG
[ENA]
¡û
>W141406695
JDYK01000026
Actinomycetota
Brachybacterium phenoliresistens [JDYK]
38889
38814
-
His
GTG
[ENA]
¡û
>C181062002
CP022316
Actinomycetota
Brachybacterium avium VR2415 [CP022316]
494717
494792
+
His
GTG
-
¡û
>C181084644
CP023563
Actinomycetota
Brachybacterium vulturis VM2412 [CP023563]
2023611
2023536
-
His
GTG
-
¡û
>C181084696
CP023564
Actinomycetota
Brachybacterium ginsengisoli DCY80 [CP023564]
1530246
1530172
-
His
GTG
-
¡û
>C181199702
CP031356
Actinomycetota
Brachybacterium saurashtrense DSM 23186 [CP031356]
1614167
1614241
+
His
GTG
-
¡û
>C191051339
CP027295
Actinomycetota
Brachybacterium sp. SGAir0954 [CP027295]
1977388
1977313
-
His
GTG
-
¡û
>W09108362
ABTF01000001
Actinomycetota
Brachybacterium faecium DSM 4810 [ABTF]
686217
686292
+
His
GTG
[ENA]
¡û
>W1910321380
FSEE01000020
Actinomycetota
Mycobacteroides abscessus subsp. abscessus 417 [FSEE]
15309
15235
-
His
GTG
[ENA]
¡û
>W1910442441
FWFG01000020
Actinomycetota
Brachybacterium nesterenkovii CIP104813 [FWFG]
29075
29149
+
His
GTG
[ENA]
¡û
>W1910442523
FWFH01000119
Actinomycetota
Brachybacterium faecium FM_RA_Lac3 [FWFH]
77206
77131
-
His
GTG
[ENA]
¡û
>W1910442579
FWFI01000024
Actinomycetota
Corynebacterium xerosis B Mi 98.15 [FWFI]
12981
12906
-
His
GTG
[ENA]
¡û
>W1910498715
FXXB01000004
Actinomycetota
Brachybacterium massiliense mt5 [FXXB]
303393
303318
-
His
GTG
[ENA]
¡û
>W1911203307
NRGR01000044
Actinomycetota
Brachybacterium alimentarium 341_9 [NRGR]
21997
21922
-
His
GTG
[ENA]
¡û
>W1911203331
NRGS01000012
Actinomycetota
Brachybacterium alimentarium 908_11 [NRGS]
12392
12467
+
His
GTG
[ENA]
¡û
>W1911532902
OIWY01000006
Actinomycetota
Brachybacterium timonense Marseille-P4339 [OIWY]
764906
764981
+
His
GTG
[ENA]
¡û
>W1911596805
PNHL01000002
Actinomycetota
Brachybacterium sp. UMB0905 [PNHL]
163345
163270
-
His
GTG
[ENA]
¡û
>W1911702243
QOCI01000013
Actinomycetota
Brachybacterium paraconglomeratum KCTC 9916 [QOCI]
30813
30738
-
His
GTG
[ENA]
¡û
>W1911726678
QSWH01000010
Actinomycetota
Brachybacterium saurashtrense DSM 23186 [QSWH]
204341
204267
-
His
GTG
[ENA]
¡û
>W1911765362
QXCP01000006
Actinomycetota
Brachybacterium sp. EE-P12 [QXCP]
24273
24198
-
His
GTG
[ENA]
¡û
>W1810187290
PKHM01000001
Actinomycetota
Dermabacter hominis UMB0490 [PKHM]
132413
132487
+
His
GTG
[ENA]
¡û
>W1810196895
PNFB01000019
Actinomycetota
Brachybacterium sp. YJGR34 [PNFB]
81248
81173
-
His
GTG
[ENA]
¡û
>W1810587413
QFKX01000006
Actinomycetota
Brachybacterium endophyticum M1HQ-2 [QFKX]
177830
177756
-
His
GTG
[ENA]
¡û
>W1810756686
QPGF01000017
Actinomycetota
Brachybacterium alimentarium 738_10 [QPGF]
20397
20322
-
His
GTG
[ENA]
¡û
>W1810756759
QPGG01000048
Actinomycetota
Brachybacterium alimentarium 862_8 [QPGG]
12579
12654
+
His
GTG
[ENA]
¡û
>W1810756808
QPGH01000049
Actinomycetota
Brachybacterium alimentarium 876_9 [QPGH]
12375
12450
+
His
GTG
[ENA]
¡û
>W1810756847
QPGI01000024
Actinomycetota
Brachybacterium alimentarium 900_8 [QPGI]
13015
13090
+
His
GTG
[ENA]
¡û
>W1810756898
QPGJ01000030
Actinomycetota
Brachybacterium alimentarium 947_11 [QPGJ]
211508
211583
+
His
GTG
[ENA]
¡û
>W1810756953
QPGK01000040
Actinomycetota
Brachybacterium alimentarium 962_10 [QPGK]
21908
21833
-
His
GTG
[ENA]
¡û
>W1810757122
QPGN01000006
Actinomycetota
Brachybacterium sp. JB7 [QPGN]
105758
105833
+
His
GTG
[ENA]
¡û
>C10101553
CP001643
Actinomycetota
Brachybacterium faecium DSM 4810 [CP001643]
2211947
2212022
+
His
GTG
[Ensembl]
¡û
>W11177857
AGBX01000007
Actinomycetota
Brachybacterium squillarum M-6-3 [AGBX]
658470
658547
+
His
GTG
[ENA]
¡û
>C161039628
CP012117
Actinomycetota
Dermabacter vaginalis AD1-86 [CP012117]
1562058
1561983
-
His
GTG
[Ensembl]
¡û
>W1610051594
BBHA01000100
Actinomycetota
Brachybacterium zhongshanense JCM 15471 [BBHA]
1939
2015
+
His
GTG
[ENA]
¡û
>W1610069255
BCSI01000003
Actinomycetota
Dermabacter hominis NBRC 106157 [BCSI]
36286
36361
+
His
GTG
[ENA]
¡û
>W1610095045
CYUG01000011
Actinomycetota
Dermabacter indicis massiliensis [CYUG]
569105
569030
-
His
GTG
[ENA]
¡û
>W121018093
AGSO01000002
Actinomycetota
Brachybacterium paraconglomeratum LC44 [AGSO]
133408
133483
+
His
GTG
[ENA]
¡û
>W1610885184
LRMP01000003
Actinomycetota
Brachybacterium sp. sponge [LRMP]
186779
186704
-
His
GTG
[ENA]
¡û
>W1710047972
BBHA01000100
Actinomycetota
Brachybacterium zhongshanense JCM 15471 [BBHA]
1939
2015
+
His
GTG
[ENA]
¡û
>W1710066628
BCSI01000003
Actinomycetota
Dermabacter hominis NBRC 106157 [BCSI]
36286
36361
+
His
GTG
[ENA]
¡û
>W1710097840
CYUG01000011
Actinomycetota
Dermabacter indicis massiliensis [CYUG]
569105
569030
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK