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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.283949 (58 seq.)
>W1711224216
LXTW01000012
Gammaproteobacteria
Moraxella nonliquefaciens [LXTW]
11070
10995
-
Gln
TTG
[ENA]
¡û
>W1711224217
LXTW01000012
Gammaproteobacteria
Moraxella nonliquefaciens [LXTW]
10684
10609
-
Gln
TTG
[ENA]
¡û
>W1711269002
LZDM01000044
Gammaproteobacteria
Moraxella nonliquefaciens [LZDM]
22731
22806
+
Gln
TTG
[ENA]
¡û
>W1711269003
LZDM01000044
Gammaproteobacteria
Moraxella nonliquefaciens [LZDM]
23117
23192
+
Gln
TTG
[ENA]
¡û
>W1711269020
LZDN01000004
Gammaproteobacteria
Moraxella nonliquefaciens [LZDN]
104
179
+
Gln
TTG
[ENA]
¡û
>W1711269196
LZDR01000049
Gammaproteobacteria
Moraxella lacunata [LZDR]
38891
38966
+
Gln
TTG
[ENA]
¡û
>W1711269197
LZDR01000049
Gammaproteobacteria
Moraxella lacunata [LZDR]
39003
39078
+
Gln
TTG
[ENA]
¡û
>W1711282058
LZMS01000041
Gammaproteobacteria
Moraxella lacunata [LZMS]
17209
17134
-
Gln
TTG
[ENA]
¡û
>W1711282059
LZMS01000041
Gammaproteobacteria
Moraxella lacunata [LZMS]
17097
17022
-
Gln
TTG
[ENA]
¡û
>W131228773
AUGF01000027
Gammaproteobacteria
Moraxella caprae DSM 19149 [AUGF]
24916
24841
-
Gln
TTG
[ENA]
¡û
>W131228774
AUGF01000027
Gammaproteobacteria
Moraxella caprae DSM 19149 [AUGF]
24803
24728
-
Gln
TTG
[ENA]
¡û
>W1711765783
MUXV01000024
Gammaproteobacteria
Moraxella bovis [MUXV]
52397
52322
-
Gln
TTG
[ENA]
¡û
>W1711765784
MUXV01000024
Gammaproteobacteria
Moraxella bovis [MUXV]
52284
52209
-
Gln
TTG
[ENA]
¡û
>W1711799855
MXAN01000080
Gammaproteobacteria
Moraxella lacunata [MXAN]
13371
13296
-
Sup
TTA
[ENA]
¡û
>W1711799856
MXAN01000080
Gammaproteobacteria
Moraxella lacunata [MXAN]
13258
13183
-
Gln
TTG
[ENA]
¡û
>W1711799930
MXAP01000035
Gammaproteobacteria
Moraxella equi [MXAP]
10467
10392
-
Gln
TTG
[ENA]
¡û
>W1711799931
MXAP01000035
Gammaproteobacteria
Moraxella equi [MXAP]
10354
10279
-
Gln
TTG
[ENA]
¡û
>W141055152
AOMT01000031
Gammaproteobacteria
Moraxella bovoculi 237 [AOMT]
41796
41721
-
Gln
TTG
[ENA]
¡û
>WENV180711618
ODFQ01000005
[ODFQ] human metagenome; G_DNA_Anterior nares
7075
7150
+
Gln
TTG
[ENA]
¢þ
>WENV180793929
ODIX01000044
[ODIX] human metagenome; G_DNA_Anterior nares
1579
1654
+
Gln
TTG
[ENA]
¢þ
>WENV180838856
ODKH01000003
[ODKH] human metagenome; G_DNA_Anterior nares
180753
180828
+
Gln
TTG
[ENA]
¢þ
>WENV180838857
ODKH01000003
[ODKH] human metagenome; G_DNA_Anterior nares
181152
181227
+
Gln
TTG
[ENA]
¢þ
>WENV180844791
ODKO01006323
[ODKO] human metagenome; G_DNA_Anterior nares
105
180
+
Gln
TTG
[ENA]
¢þ
>WENV180937534
ODTW01006465
[ODTW] human metagenome; G_DNA_Anterior nares
52
127
+
Gln
TTG
[ENA]
¢þ
>WENV180966804
ODUR01014390
[ODUR] human metagenome; G_DNA_Anterior nares
279
204
-
Gln
TTG
[ENA]
¢þ
>WENV180972516
ODUV01005029
[ODUV] human metagenome; G_DNA_Anterior nares
481
406
-
Gln
TTG
[ENA]
¢þ
>WENV180984593
ODVH01003989
[ODVH] human metagenome; G_DNA_Anterior nares
266
191
-
Gln
TTG
[ENA]
¢þ
>WENV180984651
ODVI01000010
[ODVI] human metagenome; G_DNA_Anterior nares
92
167
+
Gln
TTG
[ENA]
¢þ
>WENV180984652
ODVI01000010
[ODVI] human metagenome; G_DNA_Anterior nares
497
572
+
Gln
TTG
[ENA]
¢þ
>WENV181082440
OEAU01000761
[OEAU] human metagenome; G_DNA_Anterior nares
44
119
+
Gln
TTG
[ENA]
¢þ
>WENV181131552
OEGC01004132
[OEGC] human metagenome; G_DNA_Anterior nares
91
166
+
Gln
TTG
[ENA]
¢þ
>C181190885
CP030241
Gammaproteobacteria
Moraxella bovis [CP030241]
2326311
2326386
+
Gln
TTG
-
¡û
>C181190886
CP030241
Gammaproteobacteria
Moraxella bovis [CP030241]
2326425
2326500
+
Gln
TTG
-
¡û
>C191008806
CP011380
Gammaproteobacteria
Moraxella bovoculi 57922 [CP011380]
229119
229044
-
Gln
TTG
-
¡û
>C161032150
CP011158
Gammaproteobacteria
Moraxella ovis 199/55 [CP011158]
241184
241109
-
Gln
TTG
[Ensembl]
¡û
>C161034477
CP011374
Gammaproteobacteria
Moraxella bovoculi 58069 [CP011374]
226656
226581
-
Gln
TTG
[Ensembl]
¡û
>C161034528
CP011376
Gammaproteobacteria
Moraxella bovoculi 22581 [CP011376]
249496
249421
-
Gln
TTG
-
¡û
>C161034577
CP011377
Gammaproteobacteria
Moraxella bovoculi 23343 [CP011377]
246001
245926
-
Gln
TTG
-
¡û
>C161034628
CP011378
Gammaproteobacteria
Moraxella bovoculi 28389 [CP011378]
249367
249292
-
Gln
TTG
[Ensembl]
¡û
>C161034679
CP011379
Gammaproteobacteria
Moraxella bovoculi 33362 [CP011379]
245873
245798
-
Gln
TTG
-
¡û
>C161034728
CP011381
Gammaproteobacteria
Moraxella bovoculi 58086 [CP011381]
224613
224538
-
Gln
TTG
-
¡û
>W1610071899
BCUK01000201
Gammaproteobacteria
Moraxella lacunata NBRC 102154 [BCUK]
3842
3917
+
Sup
TTA
[ENA]
¡û
>W1610071900
BCUK01000201
Gammaproteobacteria
Moraxella lacunata NBRC 102154 [BCUK]
3955
4030
+
Gln
TTG
[ENA]
¡û
>W1610076291
BCYQ01000010
Gammaproteobacteria
Moraxella oblonga NBRC 102422 [BCYQ]
1129
1054
-
Gln
TTG
[ENA]
¡û
>W1610076312
BCYQ01000058
Gammaproteobacteria
Moraxella oblonga NBRC 102422 [BCYQ]
8300
8375
+
Gln
TTG
[ENA]
¡û
>W1611008587
LXTW01000012
Gammaproteobacteria
Moraxella nonliquefaciens [LXTW]
11070
10995
-
Gln
TTG
[ENA]
¡û
>W1611008588
LXTW01000012
Gammaproteobacteria
Moraxella nonliquefaciens [LXTW]
10684
10609
-
Gln
TTG
[ENA]
¡û
>W1611029814
LZDM01000044
Gammaproteobacteria
Moraxella nonliquefaciens [LZDM]
22731
22806
+
Gln
TTG
[ENA]
¡û
>W1611029815
LZDM01000044
Gammaproteobacteria
Moraxella nonliquefaciens [LZDM]
23117
23192
+
Gln
TTG
[ENA]
¡û
>W1611029832
LZDN01000004
Gammaproteobacteria
Moraxella nonliquefaciens [LZDN]
104
179
+
Gln
TTG
[ENA]
¡û
>W1611030008
LZDR01000049
Gammaproteobacteria
Moraxella lacunata [LZDR]
38891
38966
+
Gln
TTG
[ENA]
¡û
>W1611030009
LZDR01000049
Gammaproteobacteria
Moraxella lacunata [LZDR]
39003
39078
+
Gln
TTG
[ENA]
¡û
>W1611041269
LZMS01000041
Gammaproteobacteria
Moraxella lacunata [LZMS]
17209
17134
-
Gln
TTG
[ENA]
¡û
>W1611041270
LZMS01000041
Gammaproteobacteria
Moraxella lacunata [LZMS]
17097
17022
-
Gln
TTG
[ENA]
¡û
>W1710069101
BCUK01000201
Gammaproteobacteria
Moraxella lacunata NBRC 102154 [BCUK]
3842
3917
+
Sup
TTA
[ENA]
¡û
>W1710069102
BCUK01000201
Gammaproteobacteria
Moraxella lacunata NBRC 102154 [BCUK]
3955
4030
+
Gln
TTG
[ENA]
¡û
>W1710074106
BCYQ01000010
Gammaproteobacteria
Moraxella oblonga NBRC 102422 [BCYQ]
1129
1054
-
Gln
TTG
[ENA]
¡û
>W1710074127
BCYQ01000058
Gammaproteobacteria
Moraxella oblonga NBRC 102422 [BCYQ]
8300
8375
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK