This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.283967 (131 seq.)
>W1710866760
LMHS01000003
Actinomycetota
Microbacterium sp. Root180 [LMHS]
678454
678381
-
Arg
ACG
[ENA]
¡û
>W1711003913
LQIH01000056
Actinomycetota
Mycolicibacterium novocastrense GA-2613 [LQIH]
166568
166495
-
Arg
ACG
[ENA]
¡û
>W1711003956
LQII01000045
Actinomycetota
Mycolicibacterium novocastrense GA-2617 [LQII]
166573
166500
-
Arg
ACG
[ENA]
¡û
>W1711003980
LQIJ01000012
Actinomycetota
Mycolicibacterium novocastrense GA-2945b [LQIJ]
75921
75994
+
Arg
ACG
[ENA]
¡û
>W1711004210
LQIO01000017
Actinomycetota
Mycolicibacterium acapulense GA-1331 [LQIO]
9634
9711
+
Arg
ACG
[ENA]
¡û
>W1711004339
LQIR01000007
Actinomycetota
Mycobacterium lehmannii IS-1744 [LQIR]
36312
36235
-
Arg
ACG
[ENA]
¡û
>W1711004383
LQIS01000002
Actinomycetota
Mycobacterium sp. GA-1285 [LQIS]
117625
117550
-
Arg
ACG
[ENA]
¡û
>W1711004587
LQIW01000023
Actinomycetota
Mycobacterium sp. IS-1590 [LQIW]
71218
71291
+
Arg
ACG
[ENA]
¡û
>W1711004624
LQIX01000010
Actinomycetota
Mycobacterium sp. GA-1199 [LQIX]
49074
49001
-
Arg
ACG
[ENA]
¡û
>W1711178443
LWGR01000021
Actinomycetota
Nocardia terpenica [LWGR]
469484
469557
+
Arg
ACG
[ENA]
¡û
>W1711276578
LZIG01000088
Actinomycetota
Mycobacterium sp. 852002-51759_SCH5129042 [LZIG]
1448
1375
-
Arg
ACG
[ENA]
¡û
>W1711277081
LZIQ01000059
Actinomycetota
Mycolicibacterium celeriflavum 852002-51296_SCH5728562-a [LZIQ]
33834
33907
+
Arg
ACG
[ENA]
¡û
>W1711281736
LZMK01000334
Actinomycetota
Nocardia sp. 852002-20019_SCH5090214 [LZMK]
23391
23464
+
Arg
ACG
[ENA]
¡û
>W1711281748
LZML01000011
Actinomycetota
Nocardia sp. 852002-51101_SCH5132738 [LZML]
1435
1362
-
Arg
ACG
[ENA]
¡û
>W1711285859
LZSP01000172
Actinomycetota
Nocardia sp. 852002-51244_SCH5132740 [LZSP]
22986
23059
+
Arg
ACG
[ENA]
¡û
>W1711428225
MIHA01000025
Actinomycetota
Mycolicibacterium flavescens [MIHA]
4703
4630
-
Arg
ACG
[ENA]
¡û
>W1711613640
MOYO01000001
Actinomycetota
Nocardia seriolae [MOYO]
7931061
7931136
+
Arg
ACG
[ENA]
¡û
>W1711767569
MVAC01000037
Actinomycetota
Nocardia seriolae [MVAC]
20265
20190
-
Arg
ACG
[ENA]
¡û
>W1711773776
MVIM01000007
Actinomycetota
Mycolicibacterium tusciae [MVIM]
208672
208599
-
Arg
ACG
[ENA]
¡û
>W1711792590
MWKV01000001
Actinomycetota
Mycobacterium persicum kansasii [MWKV]
2899080
2899007
-
Arg
ACG
[ENA]
¡û
>C171001911
CP009246
Actinomycetota
Corynebacterium flavescens OJ8 [CP009246]
206106
206179
+
Arg
ACG
-
¡û
>C171068215
CP017839
Actinomycetota
Nocardia seriolae EM150506 [CP017839]
872702
872777
+
Arg
ACG
-
¡û
>WENV180031865
FTJU01000135
[FTJU] metagenome; soil
1447
1374
-
Arg
ACG
[ENA]
¢þ
>WENV180115001
OAPS01093249
[OAPS] marine metagenome; sea water
418
345
-
Arg
ACG
[ENA]
¢þ
>WENV180692040
OCZS010321119
[OCZS] soil metagenome; soil
447
374
-
Arg
ACG
[ENA]
¢þ
>WENV181298047
OFHL01019496
[OFHL] soil metagenome; Clay
96
171
+
Arg
TCG
[ENA]
¢þ
>WENV181311262
OFJB01000499
[OFJB] sludge metagenome; sludge
2398
2323
-
Arg
ACG
[ENA]
¢þ
>WENV181402599
OFTY01007217
[OFTY] sludge metagenome; sludge
1460
1533
+
Arg
ACG
[ENA]
¢þ
>W141233833
BAWD01000132
Actinomycetota
Nocardia seriolae N-2927 [BAWD]
930
1005
+
Arg
ACG
[ENA]
¡û
>WENV170579622
FUFK010040072
[FUFK] metagenome; unknown
36087
36012
-
Arg
ACG
[ENA]
¢þ
>WENV170584739
FUFK010233318
[FUFK] metagenome; unknown
508
583
+
Arg
ACG
[ENA]
¢þ
>WENV170587216
FUFK010475285
[FUFK] metagenome; unknown
896
971
+
Arg
ACG
[ENA]
¢þ
>WENV170648864
JRHI01003050
[JRHI] sediment metagenome; sediment from deep within a dark volcanic ice cave with no known source of introduced
2547
2622
+
Arg
ACG
[ENA]
¢þ
>WENV170688427
LFRM01244832
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
177
104
-
Arg
ACG
[ENA]
¢þ
>WENV170973442
MTKY01040967
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
268
193
-
Arg
ACG
[ENA]
¢þ
>WENV170973961
MTKY01052154
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
12703
12778
+
Arg
ACG
[ENA]
¢þ
>C181003420
AP017900
Actinomycetota
Nocardia seriolae UTF1 [AP017900]
238261
238334
+
Arg
ACG
-
¡û
>C181090259
CP023778
Actinomycetota
Nocardia terpenica NC_YFY_NT001 [CP023778]
232842
232915
+
Arg
ACG
-
¡û
>C181226845
LT906483
Actinomycetota
Mycolicibacterium thermoresistibile NCTC10409 [LT906483]
4559071
4558998
-
Arg
ACG
-
¡û
>C191120882
CP034170
Actinomycetota
Nakamurella antarctica S14-144 [CP034170]
381311
381236
-
Arg
ACG
-
¡û
>C191208016
LR134345
Actinomycetota
Mycobacteroides chelonae NCTC946 [LR134345]
247296
247369
+
Arg
ACG
-
¡û
>W141733424
JNKV01000002
Actinomycetota
Corynebacterium vitaeruminis Ga6A13 [JNKV]
103268
103341
+
Arg
ACG
[ENA]
¡û
>W141733425
JNKV01000002
Actinomycetota
Corynebacterium vitaeruminis Ga6A13 [JNKV]
103530
103603
+
Arg
ACG
[ENA]
¡û
>W141774695
JOJF01000017
Actinomycetota
Nocardia sp. NRRL WC-3656 [JOJF]
203114
203187
+
Arg
ACG
[ENA]
¡û
>W1910182654
BJNB01000056
Actinomycetota
Corynebacterium flavescens NBRC 14136 [BJNB]
10793
10866
+
Arg
ACG
[ENA]
¡û
>W1910897049
NGAF01000002
Actinomycetota
Nocardia cerradoensis CNM20130759 [NGAF]
691035
691108
+
Arg
ACG
[ENA]
¡û
>W1910971943
NKCN01000020
Actinomycetota
Mycobacterium lehmannii CECT 8763 [NKCN]
65897
65974
+
Arg
ACG
[ENA]
¡û
>W1911385734
NVQE01000029
Actinomycetota
Mycobacterium neglectum CECT 8778 [NVQE]
62426
62353
-
Arg
ACG
[ENA]
¡û
>W1911493035
OBEG01000004
Actinomycetota
Nocardia amikacinitolerans DSM 45537 [OBEG]
109371
109298
-
Arg
ACG
[ENA]
¡û
>W1810154985
PIZU01000035
Actinomycetota
Mycobacterium sp. QGD 101 [PIZU]
18480
18553
+
Arg
ACG
[ENA]
¡û
>W1810282364
PSYZ01000011
Actinomycetota
Nocardia nova ATCC 10905 [PSYZ]
80005
80078
+
Arg
ACG
[ENA]
¡û
>W1810282433
PSZA01000027
Actinomycetota
Nocardia nova MDA5529 [PSZA]
85675
85748
+
Arg
ACG
[ENA]
¡û
>W1810282478
PSZB01000028
Actinomycetota
Nocardia nova MDA3397 [PSZB]
1440
1367
-
Arg
ACG
[ENA]
¡û
>W1810282490
PSZC01000001
Actinomycetota
Nocardia nova MDA3139 [PSZC]
25540
25613
+
Arg
ACG
[ENA]
¡û
>W1810282544
PSZD01000001
Actinomycetota
Nocardia nova BAA2227 [PSZD]
519214
519287
+
Arg
ACG
[ENA]
¡û
>W1810282606
PSZE01000009
Actinomycetota
Nocardia nova MDA0897 [PSZE]
25540
25613
+
Arg
ACG
[ENA]
¡û
>W1810390986
PXZE01000043
Actinomycetota
Nocardia seriolae HSY-NS01 [PXZE]
20309
20236
-
Arg
ACG
[ENA]
¡û
>W1810402896
PYHS01000001
Actinomycetota
Nocardia nova ATCC 33727 [PYHS]
102871
102944
+
Arg
ACG
[ENA]
¡û
>W1810402983
PYHT01000023
Actinomycetota
Nocardia sp. MDA0666 [PYHT]
369
296
-
Arg
ACG
[ENA]
¡û
>W1810720321
QNRE01000034
Actinomycetota
Nocardia puris DSM 44599 [QNRE]
134
61
-
Arg
ACG
[ENA]
¡û
>W1810763318
QQAZ01000008
Actinomycetota
Nocardia mexicana DSM 44952 [QQAZ]
401361
401434
+
Arg
ACG
[ENA]
¡û
>W1810763462
QQBC01000005
Actinomycetota
Nocardia pseudobrasiliensis DSM 44290 [QQBC]
9029
9102
+
Arg
ACG
[ENA]
¡û
>C151013367
CP006850
Actinomycetota
Nocardia nova SH22a [CP006850]
219475
219402
-
Arg
ACG
[Ensembl]
¡û
>W1510021320
BBYQ01000143
Actinomycetota
Nocardia seriolae U-1 [BBYQ]
953
1028
+
Arg
ACG
[ENA]
¡û
>W1511220637
JNCT01000036
Actinomycetota
Nocardia seriolae ZJ0503 [JNCT]
35690
35765
+
Arg
ACG
[ENA]
¡û
>C161072387
CP014475
Actinomycetota
Mycolicibacterium phlei CCUG 21000 [CP014475]
247294
247367
+
Arg
ACG
-
¡û
>W121020659
AGVE01000042
Actinomycetota
Mycolicibacterium thermoresistibile ATCC 19527 [AGVE]
327533
327460
-
Arg
ACG
[ENA]
¡û
>W121060246
AJFJ01000066
Actinomycetota
Mycolicibacterium phlei RIVM601174 [AJFJ]
31052
30979
-
Arg
ACG
[ENA]
¡û
>W121124917
BAFQ01000007
Actinomycetota
Nocardia aobensis NBRC 100429 [BAFQ]
3143
3216
+
Arg
ACG
[ENA]
¡û
>W121125205
BAFW01000002
Actinomycetota
Nocardia cerradoensis NBRC 101014 [BAFW]
111427
111500
+
Arg
ACG
[ENA]
¡û
>W121125257
BAFX01000004
Actinomycetota
Nocardia concava NBRC 100430 [BAFX]
1165
1240
+
Arg
ACG
[ENA]
¡û
>W121125513
BAGC01000002
Actinomycetota
Nocardia niigatensis NBRC 100131 [BAGC]
63935
64010
+
Arg
ACG
[ENA]
¡û
>W121125575
BAGD01000021
Actinomycetota
Nocardia otitidiscaviarum NBRC 14405 [BAGD]
21270
21197
-
Arg
ACG
[ENA]
¡û
>W121125837
BAGI01000107
Actinomycetota
Nocardia terpenica NBRC 100888 [BAGI]
405
332
-
Arg
ACG
[ENA]
¡û
>W121125999
BAGL01000003
Actinomycetota
Nocardia transvalensis NBRC 15921 [BAGL]
27780
27853
+
Arg
ACG
[ENA]
¡û
>W121126049
BAGM01000005
Actinomycetota
Nocardia veterana NBRC 100344 [BAGM]
1865
1792
-
Arg
ACG
[ENA]
¡û
>W121010628
AGJJ01000004
Actinomycetota
Mycolicibacterium tusciae JS617 [AGJJ]
320343
320416
+
Arg
ACG
[ENA]
¡û
>W1610011472
ANBO01000012
Actinomycetota
Mycolicibacterium phlei DSM 43239 = CCUG 21000 [ANBO]
50948
50875
-
Arg
ACG
[ENA]
¡û
>W1610021345
ATDR01000001
Actinomycetota
Mycolicibacterium phlei DSM 43072 [ATDR]
50880
50807
-
Arg
ACG
[ENA]
¡û
>W1610021389
ATHW01000002
Actinomycetota
Mycolicibacterium phlei DSM 43070 [ATHW]
51062
50989
-
Arg
ACG
[ENA]
¡û
>W1610051759
BBHF01000133
Actinomycetota
Mycolicibacterium rutilum JCM 16371 [BBHF]
2200
2127
-
Arg
ACG
[ENA]
¡û
>W1610057420
BBXO01000003
Actinomycetota
Nocardia pseudobrasiliensis [BBXO]
271787
271860
+
Arg
ACG
[ENA]
¡û
>W1610070147
BCTA01000026
Actinomycetota
Mycolicibacterium novocastrense [BCTA]
284712
284785
+
Arg
ACG
[ENA]
¡û
>W1610070178
BCTB01000001
Actinomycetota
Mycolicibacterium thermoresistibile [BCTB]
12515
12588
+
Arg
ACG
[ENA]
¡û
>W1610078366
BDAV01000012
Actinomycetota
Nocardia africana NBRC 100379 [BDAV]
196920
196847
-
Arg
ACG
[ENA]
¡û
>W1610078715
BDBC01000015
Actinomycetota
Nocardia beijingensis NBRC 16342 [BDBC]
45591
45518
-
Arg
ACG
[ENA]
¡û
>W1610078853
BDBF01000004
Actinomycetota
Nocardia elegans NBRC 108235 [BDBF]
62925
62998
+
Arg
ACG
[ENA]
¡û
>W1610079174
BDBL01000002
Actinomycetota
Nocardia kruczakiae NBRC 101016 [BDBL]
342744
342671
-
Arg
ACG
[ENA]
¡û
>W1610079273
BDBN01000008
Actinomycetota
Nocardia nova NBRC 15556 [BDBN]
23919
23992
+
Arg
ACG
[ENA]
¡û
>W1610079411
BDBP01000093
Actinomycetota
Nocardia lijiangensis NBRC 108240 [BDBP]
26037
26110
+
Arg
ACG
[ENA]
¡û
>W1610079541
BDBS01000024
Actinomycetota
Nocardia pseudobrasiliensis NBRC 108224 [BDBS]
8933
9006
+
Arg
ACG
[ENA]
¡û
>W1610079700
BDBV01000054
Actinomycetota
Nocardia mexicana NBRC 108244 [BDBV]
17631
17704
+
Arg
ACG
[ENA]
¡û
>W1610079755
BDBW01000033
Actinomycetota
Nocardia puris NBRC 108233 [BDBW]
202297
202224
-
Arg
ACG
[ENA]
¡û
>W1610080335
BDCH01000006
Actinomycetota
Nocardia crassostreae [BDCH]
6732
6659
-
Arg
ACG
[ENA]
¡û
>W1610080589
BDCM01000003
Actinomycetota
Nocardia mikamii NBRC 108933 [BDCM]
706897
706824
-
Arg
ACG
[ENA]
¡û
>W1610080639
BDCN01000005
Actinomycetota
Nocardia violaceofusca NBRC 14427 [BDCN]
92621
92548
-
Arg
ACG
[ENA]
¡û
>W1610526832
JPUH01000006
Actinomycetota
Mycolicibacterium phlei DSM 43071 [JPUH]
51074
51001
-
Arg
ACG
[ENA]
¡û
>W1610729106
LMHS01000003
Actinomycetota
Microbacterium sp. Root180 [LMHS]
678454
678381
-
Arg
ACG
[ENA]
¡û
>W1610854507
LQIH01000056
Actinomycetota
Mycolicibacterium novocastrense GA-2613 [LQIH]
166568
166495
-
Arg
ACG
[ENA]
¡û
>W1610854550
LQII01000045
Actinomycetota
Mycolicibacterium novocastrense GA-2617 [LQII]
166573
166500
-
Arg
ACG
[ENA]
¡û
>W1610854574
LQIJ01000012
Actinomycetota
Mycolicibacterium novocastrense GA-2945b [LQIJ]
75921
75994
+
Arg
ACG
[ENA]
¡û
>W1610854933
LQIR01000007
Actinomycetota
Mycobacterium lehmannii IS-1744 [LQIR]
36312
36235
-
Arg
ACG
[ENA]
¡û
>W1610854977
LQIS01000002
Actinomycetota
Mycobacterium sp. GA-1285 [LQIS]
117625
117550
-
Arg
ACG
[ENA]
¡û
>W1610855181
LQIW01000023
Actinomycetota
Mycobacterium sp. IS-1590 [LQIW]
71218
71291
+
Arg
ACG
[ENA]
¡û
>W1610855218
LQIX01000010
Actinomycetota
Mycobacterium sp. GA-1199 [LQIX]
49074
49001
-
Arg
ACG
[ENA]
¡û
>W1610986490
LWGR01000021
Actinomycetota
Nocardia terpenica [LWGR]
469484
469557
+
Arg
ACG
[ENA]
¡û
>W1611035863
LZIG01000088
Actinomycetota
Mycobacterium sp. 852002-51759_SCH5129042 [LZIG]
1448
1375
-
Arg
ACG
[ENA]
¡û
>W1611036366
LZIQ01000059
Actinomycetota
Mycolicibacterium celeriflavum 852002-51296_SCH5728562-a [LZIQ]
33834
33907
+
Arg
ACG
[ENA]
¡û
>W1611041021
LZMK01000334
Actinomycetota
Nocardia sp. 852002-20019_SCH5090214 [LZMK]
23391
23464
+
Arg
ACG
[ENA]
¡û
>W1611041033
LZML01000011
Actinomycetota
Nocardia sp. 852002-51101_SCH5132738 [LZML]
1435
1362
-
Arg
ACG
[ENA]
¡û
>W1611043420
LZSP01000172
Actinomycetota
Nocardia sp. 852002-51244_SCH5132740 [LZSP]
22986
23059
+
Arg
ACG
[ENA]
¡û
>W1710018040
ATDR01000001
Actinomycetota
Mycolicibacterium phlei DSM 43072 [ATDR]
50880
50807
-
Arg
ACG
[ENA]
¡û
>W1710018084
ATHW01000002
Actinomycetota
Mycolicibacterium phlei DSM 43070 [ATHW]
51062
50989
-
Arg
ACG
[ENA]
¡û
>W1710048137
BBHF01000133
Actinomycetota
Mycolicibacterium rutilum JCM 16371 [BBHF]
2200
2127
-
Arg
ACG
[ENA]
¡û
>W1710054119
BBXO01000003
Actinomycetota
Nocardia pseudobrasiliensis [BBXO]
271787
271860
+
Arg
ACG
[ENA]
¡û
>W1710067520
BCTA01000026
Actinomycetota
Mycolicibacterium novocastrense [BCTA]
284712
284785
+
Arg
ACG
[ENA]
¡û
>W1710067551
BCTB01000001
Actinomycetota
Mycolicibacterium thermoresistibile [BCTB]
12515
12588
+
Arg
ACG
[ENA]
¡û
>W1710076925
BDAV01000012
Actinomycetota
Nocardia africana NBRC 100379 [BDAV]
196920
196847
-
Arg
ACG
[ENA]
¡û
>W1710077274
BDBC01000015
Actinomycetota
Nocardia beijingensis NBRC 16342 [BDBC]
45591
45518
-
Arg
ACG
[ENA]
¡û
>W1710077412
BDBF01000004
Actinomycetota
Nocardia elegans NBRC 108235 [BDBF]
62925
62998
+
Arg
ACG
[ENA]
¡û
>W1710077733
BDBL01000002
Actinomycetota
Nocardia kruczakiae NBRC 101016 [BDBL]
342744
342671
-
Arg
ACG
[ENA]
¡û
>W1710077832
BDBN01000008
Actinomycetota
Nocardia nova NBRC 15556 [BDBN]
23919
23992
+
Arg
ACG
[ENA]
¡û
>W1710077970
BDBP01000093
Actinomycetota
Nocardia lijiangensis NBRC 108240 [BDBP]
26037
26110
+
Arg
ACG
[ENA]
¡û
>W1710078100
BDBS01000024
Actinomycetota
Nocardia pseudobrasiliensis NBRC 108224 [BDBS]
8933
9006
+
Arg
ACG
[ENA]
¡û
>W1710078259
BDBV01000054
Actinomycetota
Nocardia mexicana NBRC 108244 [BDBV]
17631
17704
+
Arg
ACG
[ENA]
¡û
>W1710078314
BDBW01000033
Actinomycetota
Nocardia puris NBRC 108233 [BDBW]
202297
202224
-
Arg
ACG
[ENA]
¡û
>W1710078894
BDCH01000006
Actinomycetota
Nocardia crassostreae [BDCH]
6732
6659
-
Arg
ACG
[ENA]
¡û
>W1710079148
BDCM01000003
Actinomycetota
Nocardia mikamii NBRC 108933 [BDCM]
706897
706824
-
Arg
ACG
[ENA]
¡û
>W1710079198
BDCN01000005
Actinomycetota
Nocardia violaceofusca NBRC 14427 [BDCN]
92621
92548
-
Arg
ACG
[ENA]
¡û
>W1710575722
FOZJ01000003
Actinomycetota
Microbacterium sp. cf046 [FOZJ]
472316
472389
+
Arg
ACG
[ENA]
¡û
>W1710628386
JPUH01000006
Actinomycetota
Mycolicibacterium phlei DSM 43071 [JPUH]
51074
51001
-
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK