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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.283971 (23 seq.)
>C171091650
CP019236
Betaproteobacteria
Rhodoferax koreense DCY-110 [CP019236]
4053580
4053505
-
Val
TAC
-
¡û
>C017353
CP000316
Betaproteobacteria
Polaromonas sp. JS666 [CP000316]
3231281
3231206
-
Val
TAC
[Ensembl]
¡û
>WENV180016496
FSVG01000863
[FSVG] metagenome; soil
346
421
+
Val
TAC
[ENA]
¢þ
>WENV180016863
FSVX01001152
[FSVX] metagenome; soil
304
379
+
Val
TAC
[ENA]
¢þ
>WENV180023894
FTIF01003516
[FTIF] metagenome; soil
6022
5947
-
Val
TAC
[ENA]
¢þ
>WENV180023929
FTIF01004390
[FTIF] metagenome; soil
31847
31772
-
Val
TAC
[ENA]
¢þ
>WENV180023950
FTIF01004961
[FTIF] metagenome; soil
8007
7932
-
Val
TAC
[ENA]
¢þ
>WENV180024177
FTIF01140805
[FTIF] metagenome; soil
257
332
+
Val
TAC
[ENA]
¢þ
>WENV181046956
ODXX01035573
[ODXX] human metagenome; G_DNA_Buccal mucosa
138
213
+
Val
TAC
[ENA]
¢þ
>WENV181370042
OFQR01008426
[OFQR] freshwater metagenome; Freshwater Lake
362
437
+
Val
TAC
[ENA]
¢þ
>C08007667
CP000316
Betaproteobacteria
Polaromonas sp. JS666 [CP000316]
3231281
3231209
-
Val
TAC
[Ensembl]
¡û
>WENV001930
AACY020054368
Marine microbial communities from Global Ocean Sampling (GOS)
1154
1079
-
Val
TAC
[ENA]
>W09101632
AAFQ02000010
Betaproteobacteria
Polaromonas sp. JS666 [AAFQ]
179338
179413
+
Val
TAC
[ENA]
¡û
>C191073172
CP031013
Betaproteobacteria
Polaromonas sp. SP1 [CP031013]
3105563
3105638
+
Val
TAC
-
¡û
>SRA1003600
SRR002327.60749
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
86
161
+
Val
TAC
[SRA]
>W1810222854
POSP01000003
Betaproteobacteria
Paucibacter aquatile CR182 [POSP]
637607
637532
-
Val
TAC
[ENA]
¡û
>SRA1003968
SRR002328.63250
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
186
111
-
Val
TAC
[SRA]
>W1810577599
QEOJ01000002
Betaproteobacteria
Rhodoferax sp. YR267 [QEOJ]
587145
587070
-
Val
TAC
[ENA]
¡û
>C161059535
CP013692
Betaproteobacteria
Paucibacter sp. KCTC 42545 [CP013692]
1489397
1489472
+
Val
TAC
[Ensembl]
¡û
>W121084935
AKIV01000141
Betaproteobacteria
Polaromonas sp. CF318 [AKIV]
1902
1977
+
Val
TAC
[ENA]
¡û
>W1710524829
FNJA01000008
Betaproteobacteria
Rhodoferax sp. OV413 OV413 [FNJA]
169466
169391
-
Val
TAC
[ENA]
¡û
>W1710557416
FOKZ01000021
Betaproteobacteria
Polaromonas sp. OV174 [FOKZ]
69106
69181
+
Val
TAC
[ENA]
¡û
>W1710578292
FPBM01000001
Betaproteobacteria
Polaromonas sp. YR568 [FPBM]
475983
475908
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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