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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.284040 (49 seq.)
>W1710914948
LNTY01000009
Gammaproteobacteria
Enterovibrio coralii [LNTY]
123
198
+
Ala
TGC
[ENA]
¡û
>W1711174414
LWEE01000298
Gammaproteobacteria
Halioglobus sp. HI00S01 [LWEE]
4079
4004
-
Ala
TGC
[ENA]
¡û
>W1711174426
LWEE01000390
Gammaproteobacteria
Halioglobus sp. HI00S01 [LWEE]
121
196
+
Ala
TGC
[ENA]
¡û
>W1711767942
MVBD01000022
Gammaproteobacteria
Marinicella sediminis F2 [MVBD]
3490
3415
-
Ala
TGC
[ENA]
¡û
>W1712070496
NGNS01000048
Gammaproteobacteria
Neiella marina [NGNS]
278
203
-
Ala
TGC
[ENA]
¡û
>C171094613
CP019450
Gammaproteobacteria
Halioglobus japonicus NBRC 107739 [CP019450]
3875989
3875914
-
Ala
TGC
-
¡û
>C171094625
CP019450
Gammaproteobacteria
Halioglobus japonicus NBRC 107739 [CP019450]
185412
185337
-
Ala
TGC
-
¡û
>WENV182573748
OJFP01023544
[OJFP] seawater metagenome; Sea water
692
617
-
Ala
TGC
[ENA]
¢þ
>WENV182580924
OJGW01029366
[OJGW] seawater metagenome; Sea water
692
617
-
Ala
TGC
[ENA]
¢þ
>WENV182581654
OJGX01030849
[OJGX] seawater metagenome; Sea water
45
120
+
Ala
TGC
[ENA]
¢þ
>WENV182586946
OJHK01017669
[OJHK] seawater metagenome; Sea water
611
536
-
Ala
TGC
[ENA]
¢þ
>WENV170345423
CETF01006231
[CETF] marine metagenome genome assembly TARA_109_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
656
581
-
Ala
TGC
[ENA]
¢þ
>W1810196407
PKUR01000012
Gammaproteobacteria
Halioglobus japonicus S1-36 [PKUR]
1817
1892
+
Ala
TGC
[ENA]
¡û
>W1810270691
PREV01000026
Gammaproteobacteria
Microbulbifer pacificus LD25 [PREV]
1866991
1867066
+
Ala
TGC
[ENA]
¡û
>W1810270693
PREV01000026
Gammaproteobacteria
Microbulbifer pacificus LD25 [PREV]
2272645
2272720
+
Ala
TGC
[ENA]
¡û
>W1810270705
PREV01000026
Gammaproteobacteria
Microbulbifer pacificus LD25 [PREV]
780583
780508
-
Ala
TGC
[ENA]
¡û
>W1810270710
PREV01000026
Gammaproteobacteria
Microbulbifer pacificus LD25 [PREV]
3183
3108
-
Ala
TGC
[ENA]
¡û
>W1810582661
QEWO01000003
Gammaproteobacteria
Parahaliea mediterranea DSM 21924 [QEWO]
665389
665314
-
Ala
TGC
[ENA]
¡û
>W1810596824
QGGU01000023
Gammaproteobacteria
Pleionea mediterranea DSM 25350 [QGGU]
3494
3419
-
Ala
TGC
[ENA]
¡û
>W1810784244
QRAN01000047
Gammaproteobacteria
Seongchinamella sediminis U0301 [QRAN]
2234
2159
-
Ala
TGC
[ENA]
¡û
>W1810784245
QRAN01000047
Gammaproteobacteria
Seongchinamella sediminis U0301 [QRAN]
2076
2001
-
Ala
TGC
[ENA]
¡û
>W10108848
ADAQ01000002
Gammaproteobacteria
Grimontia hollisae CIP 101886 [ADAQ]
1493
1568
+
Ala
TGC
[ENA]
¡û
>W10108857
ADAQ01000006
Gammaproteobacteria
Grimontia hollisae CIP 101886 [ADAQ]
103271
103196
-
Ala
TGC
[ENA]
¡û
>W10108906
ADAQ01000011
Gammaproteobacteria
Grimontia hollisae CIP 101886 [ADAQ]
864025
863950
-
Ala
TGC
[ENA]
¡û
>W10108938
ADAQ01000013
Gammaproteobacteria
Grimontia hollisae CIP 101886 [ADAQ]
1071136
1071061
-
Ala
TGC
[ENA]
¡û
>W11111235
ADAQ01000002
Gammaproteobacteria
Grimontia hollisae CIP 101886 [ADAQ]
1493
1568
+
Ala
TGC
[ENA]
¡û
>W11111244
ADAQ01000006
Gammaproteobacteria
Grimontia hollisae CIP 101886 [ADAQ]
103271
103196
-
Ala
TGC
[ENA]
¡û
>W11111293
ADAQ01000011
Gammaproteobacteria
Grimontia hollisae CIP 101886 [ADAQ]
864025
863950
-
Ala
TGC
[ENA]
¡û
>W11111325
ADAQ01000013
Gammaproteobacteria
Grimontia hollisae CIP 101886 [ADAQ]
1071136
1071061
-
Ala
TGC
[ENA]
¡û
>W1511573593
LANB01000001
Gammaproteobacteria
Cellvibrionaceae bacterium 1162T.S.0a.05 1162T.S.0a.05 [LANB]
2916365
2916440
+
Ala
TGC
[ENA]
¡û
>W1511582532
LASY01000139
Gammaproteobacteria
Grimontia sp. AD028 [LASY]
240
315
+
Ala
TGC
[ENA]
¡û
>W11150211
AEVK01000421
Gammaproteobacteria
gamma proteobacterium IMCC1989 [AEVK]
191
266
+
Ala
TGC
[ENA]
¡û
>C161065998
CP014056
Gammaproteobacteria
Grimontia hollisae FDAARGOS_111 [CP014055, CP014056]
1328280
1328355
+
Ala
TGC
-
¡û
>C161066003
CP014056
Gammaproteobacteria
Grimontia hollisae FDAARGOS_111 [CP014055, CP014056]
1433739
1433814
+
Ala
TGC
-
¡û
>C161066020
CP014056
Gammaproteobacteria
Grimontia hollisae FDAARGOS_111 [CP014055, CP014056]
1784260
1784335
+
Ala
TGC
-
¡û
>C161066074
CP014056
Gammaproteobacteria
Grimontia hollisae FDAARGOS_111 [CP014055, CP014056]
652143
652068
-
Ala
TGC
-
¡û
>C161066082
CP014056
Gammaproteobacteria
Grimontia hollisae FDAARGOS_111 [CP014055, CP014056]
510293
510218
-
Ala
TGC
-
¡û
>W1610419955
FIZX01000022
Gammaproteobacteria
Grimontia celer 96-237 [FIZX]
271
346
+
Ala
TGC
[ENA]
¡û
>W1610419958
FIZX01000026
Gammaproteobacteria
Grimontia celer 96-237 [FIZX]
664
589
-
Ala
TGC
[ENA]
¡û
>W1610420063
FIZY01000251
Gammaproteobacteria
Grimontia marina [FIZY]
332
407
+
Ala
TGC
[ENA]
¡û
>C131006075
CP003746
Gammaproteobacteria
Simiduia agarivorans SA1 = DSM 21679 [CP003746]
2075042
2074967
-
Ala
TGC
[Ensembl]
¡û
>C131006084
CP003746
Gammaproteobacteria
Simiduia agarivorans SA1 = DSM 21679 [CP003746]
1909559
1909484
-
Ala
TGC
[Ensembl]
¡û
>C131006090
CP003746
Gammaproteobacteria
Simiduia agarivorans SA1 = DSM 21679 [CP003746]
1037552
1037477
-
Ala
TGC
[Ensembl]
¡û
>W1610773252
LNTY01000009
Gammaproteobacteria
Enterovibrio coralii [LNTY]
123
198
+
Ala
TGC
[ENA]
¡û
>W1610982727
LWEE01000298
Gammaproteobacteria
Halioglobus sp. HI00S01 [LWEE]
4079
4004
-
Ala
TGC
[ENA]
¡û
>W1610982739
LWEE01000390
Gammaproteobacteria
Halioglobus sp. HI00S01 [LWEE]
121
196
+
Ala
TGC
[ENA]
¡û
>W1710419691
FIZX01000022
Gammaproteobacteria
Grimontia celer 96-237 [FIZX]
271
346
+
Ala
TGC
[ENA]
¡û
>W1710419694
FIZX01000026
Gammaproteobacteria
Grimontia celer 96-237 [FIZX]
664
589
-
Ala
TGC
[ENA]
¡û
>W1710419799
FIZY01000251
Gammaproteobacteria
Grimontia marina [FIZY]
332
407
+
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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