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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.28406 (85 seq.)
>W1710862914
LMER01000020
Actinomycetota
Angustibacter sp. Root456 [LMER]
210080
209991
-
Ser
CGA
[ENA]
¡û
>W1710866827
LMHU01000005
Actinomycetota
Terrabacter sp. Root181 [LMHU]
624477
624566
+
Ser
CGA
[ENA]
¡û
>W1710868171
LMIW01000009
Actinomycetota
Terrabacter sp. Root85 [LMIW]
448240
448329
+
Ser
CGA
[ENA]
¡û
>W1711018566
LQXA01000030
Actinomycetota
Clavibacter michiganensis subsp. tessellarius [LQXA]
73724
73813
+
Ser
CGA
[ENA]
¡û
>W1711312289
MAST01000001
Actinomycetota
Humibacillus sp. DSM 29435 [MAST]
5142
5231
+
Ser
CGA
[ENA]
¡û
>W1711357172
MDHB01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHB]
883122
883033
-
Ser
CGA
[ENA]
¡û
>W1711357229
MDHC01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHC]
3056124
3056035
-
Ser
CGA
[ENA]
¡û
>W1711357279
MDHD01000363
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHD]
12042
11953
-
Ser
CGA
[ENA]
¡û
>W1711357300
MDHE01000102
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHE]
30523
30612
+
Ser
CGA
[ENA]
¡û
>W1711357368
MDHF01000234
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHF]
7420
7331
-
Ser
CGA
[ENA]
¡û
>W1711357413
MDHG01000002
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHG]
1418487
1418398
-
Ser
CGA
[ENA]
¡û
>W1711357437
MDHH01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHH]
728664
728575
-
Ser
CGA
[ENA]
¡û
>W1711357503
MDHI01000012
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHI]
9
98
+
Ser
CGA
[ENA]
¡û
>W1711357514
MDHI01000024
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHI]
294247
294158
-
Ser
CGA
[ENA]
¡û
>W1711357544
MDHJ01000001
Actinomycetota
Clavibacter michiganensis [MDHJ]
3046775
3046686
-
Ser
CGA
[ENA]
¡û
>W1711357583
MDHK01000036
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHK]
13470
13559
+
Ser
CGA
[ENA]
¡û
>W1711357634
MDHL01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHL]
3103095
3103006
-
Ser
CGA
[ENA]
¡û
>W1711357678
MDHM01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHM]
3052810
3052721
-
Ser
CGA
[ENA]
¡û
>W1711360711
MDJW01000009
Actinomycetota
Clavibacter michiganensis [MDJW]
312056
312145
+
Ser
CGA
[ENA]
¡û
>W1711360751
MDJX01000166
Actinomycetota
Clavibacter michiganensis [MDJX]
449
360
-
Ser
CGA
[ENA]
¡û
>W1711360860
MDJZ01000017
Actinomycetota
Clavibacter michiganensis [MDJZ]
172441
172352
-
Ser
CGA
[ENA]
¡û
>W1711517405
MLJO01000002
Actinomycetota
Intrasporangium flavum flava [MLJO]
31280
31369
+
Ser
CGA
[ENA]
¡û
>W1711664256
MQVT01000017
Actinomycetota
Dermacoccus nishinomiyaensis [MQVT]
54788
54877
+
Ser
CGA
[ENA]
¡û
>W1711664323
MQVU01000033
Actinomycetota
Dermacoccus nishinomiyaensis [MQVU]
3277
3188
-
Ser
CGA
[ENA]
¡û
>W131185540
ARTT01000012
Actinomycetota
Terracoccus sp. 273MFTsu3.1 [ARTT]
523420
523509
+
Ser
CGA
[ENA]
¡û
>C006160
AM711867
Actinomycetota
Clavibacter michiganensis subsp. michiganensis NCPPB 382 [AM711867]
3072632
3072543
-
Ser
CGA
[Ensembl]
¡û
>WENV180377513
OBON01033002
[OBON] marine metagenome; sea water
359
448
+
Ser
CGA
[ENA]
¢þ
>WENV181311733
OFJB01010195
[OFJB] sludge metagenome; sludge
362
273
-
Ser
CGA
[ENA]
¢þ
>WENV181387070
OFRL01038444
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
267
178
-
Ser
CGA
[ENA]
¢þ
>W141143084
AWSA01000037
Actinomycetota
Intrasporangium oryzae NRRL B-24470 [AWSA]
43832
43743
-
Ser
CGA
[ENA]
¡û
>W141212776
AZQZ01000003
Actinomycetota
Clavibacter michiganensis michiganensis LMG 26808 [AZQZ]
307695
307784
+
Ser
CGA
[ENA]
¡û
>W141242930
CAIZ01000161
Actinomycetota
Phycicoccus elongatus Lp2 [CAIZ]
7661
7750
+
Ser
CGA
[ENA]
¡û
>C08003538
AM849034
Actinomycetota
Clavibacter michiganensis subsp. sepedonicus ATCC 33113 [AM849034]
507405
507494
+
Ser
CGA
[Ensembl]
¡û
>WENV183662365
ORJL010184722
[ORJL] groundwater metagenome; groundwater
5575
5486
-
Ser
CGA
[ENA]
¢þ
>WENV183662889
ORJL010235419
[ORJL] groundwater metagenome; groundwater
755
666
-
Ser
CGA
[ENA]
¢þ
>WENV183669255
ORJL010822481
[ORJL] groundwater metagenome; groundwater
4662
4751
+
Ser
CGA
[ENA]
¢þ
>WENV183673407
ORJL011273757
[ORJL] groundwater metagenome; groundwater
112
23
-
Ser
CGA
[ENA]
¢þ
>WENV183675950
ORJL011572589
[ORJL] groundwater metagenome; groundwater
755
666
-
Ser
CGA
[ENA]
¢þ
>WENV183684408
ORMF010706950
[ORMF] groundwater metagenome; groundwater
394
305
-
Ser
CGA
[ENA]
¢þ
>WENV183690008
ORMF011532788
[ORMF] groundwater metagenome; groundwater
322
233
-
Ser
CGA
[ENA]
¢þ
>WENV183711526
PDWI01072065
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
3067
2978
-
Ser
CGA
[ENA]
¢þ
>WENV183721287
PDWJ01062560
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
2846
2757
-
Ser
CGA
[ENA]
¢þ
>WENV183746549
POYE01005812
[POYE] biofilm metagenome; steel pipe from biofilm reactor
3
92
+
Ser
CGA
[ENA]
¢þ
>WENV170571902
FLOH01000366
[FLOH] marine metagenome; water
484
395
-
Ser
CGA
[ENA]
¢þ
>C181048874
CP021034
Actinomycetota
Clavibacter michiganensis subsp. insidiosus R1-3 [CP021034]
356040
356129
+
Ser
CGA
-
¡û
>C181048941
CP021038
Actinomycetota
Clavibacter michiganensis subsp. insidiosus ATCC 10253 [CP021038]
2966970
2966881
-
Ser
CGA
-
¡û
>C181196279
CP031145
Actinomycetota
Intrasporangium calvum C5 [CP031145]
239008
239097
+
Ser
CGA
-
¡û
>C181200528
CP031447
Actinomycetota
Austwickia chelonae LK16-18 [CP031447]
3055057
3054967
-
Ser
CGA
-
¡û
>W141773549
JOIN01000007
Actinomycetota
Corynebacterium variabile [JOIN]
227265
227354
+
Ser
CGA
[ENA]
¡û
>W1910839673
MZMM01000001
Actinomycetota
Clavibacter sepedonicus subsp. sepedonicus CFIA-Cs3N [MZMM]
2705453
2705542
+
Ser
CGA
[ENA]
¡û
>W1910839729
MZMN01000003
Actinomycetota
Clavibacter sepedonicus subsp. sepedonicus CFIA-CsR14 [MZMN]
1247380
1247291
-
Ser
CGA
[ENA]
¡û
>W1910839740
MZMO01000001
Actinomycetota
Clavibacter michiganensis subsp. insidiosus LMG 3663 [MZMO]
467948
468037
+
Ser
CGA
[ENA]
¡û
>W1910839788
MZMP01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis LMG 7333 [MZMP]
1295355
1295444
+
Ser
CGA
[ENA]
¡û
>W1911748211
QWEA01001557
Actinomycetota
Clavibacter michiganensis CFBP 6488 [QWEA]
214
303
+
Ser
CGA
[ENA]
¡û
>W1911748245
QWEB01000138
Actinomycetota
Clavibacter michiganensis CFBP 7491 [QWEB]
6320
6231
-
Ser
CGA
[ENA]
¡û
>W1911748298
QWEC01000632
Actinomycetota
Clavibacter michiganensis CFBP 7493 [QWEC]
458
369
-
Ser
CGA
[ENA]
¡û
>W1911748384
QWEE01000394
Actinomycetota
Clavibacter californiensis subsp. californiensis CFBP 8216 [QWEE]
1834
1745
-
Ser
CGA
[ENA]
¡û
>W1911749603
QWGS01000816
Actinomycetota
Clavibacter phaseoli subsp. chilensis CFBP 8217 [QWGS]
407
318
-
Ser
CGA
[ENA]
¡û
>W1911749688
QWGU01000640
Actinomycetota
Clavibacter lycopersici CFBP 8616 [QWGU]
130
219
+
Ser
CGA
[ENA]
¡û
>W1911749731
QWGV01000483
Actinomycetota
Clavibacter phaseoli subsp. phaseoli CFBP 8627 [QWGV]
1861
1772
-
Ser
CGA
[ENA]
¡û
>W1911752315
QWLM01000015
Actinomycetota
Dermacoccus abyssi MT1.1 [QWLM]
49791
49702
-
Ser
CGA
[ENA]
¡û
>W1810277237
PSTR01000003
Actinomycetota
Clavibacter michiganensis AY1B2 [PSTR]
168936
169025
+
Ser
CGA
[ENA]
¡û
>W1810277290
PSTS01000010
Actinomycetota
Clavibacter michiganensis AY1A6 [PSTS]
20264
20175
-
Ser
CGA
[ENA]
¡û
>W1810277401
PSTV01000001
Actinomycetota
Clavibacter michiganensis Z002 [PSTV]
80440
80351
-
Ser
CGA
[ENA]
¡û
>W1810277491
PSTW01000030
Actinomycetota
Clavibacter michiganensis Z001 [PSTW]
104923
104834
-
Ser
CGA
[ENA]
¡û
>W1810282082
PSXY01000010
Actinomycetota
Clavibacter michiganensis AY1B3 [PSXY]
46718
46807
+
Ser
CGA
[ENA]
¡û
>W1810860771
QTTK01000001
Actinomycetota
Clavibacter sp. 199 [QTTK]
1353921
1354010
+
Ser
CGA
[ENA]
¡û
>C151075656
CP011043
Actinomycetota
Clavibacter michiganensis subsp. insidiosus R1-1 [CP011043]
2988754
2988665
-
Ser
CGA
[Ensembl]
¡û
>C151077128
CP011112
Actinomycetota
Luteipulveratus mongoliensis MN07-A0370 [CP011112]
4992264
4992353
+
Ser
CGA
-
¡û
>C151095716
CP012573
Actinomycetota
Clavibacter capsici PF008 [CP012573]
2832481
2832392
-
Ser
CGA
-
¡û
>W1510071695
CDGT01000021
Actinomycetota
Mobilicoccus massiliensis SIT2 [CDGT]
165240
165327
+
Ser
CGA
[ENA]
¡û
>C11111415
CP002343
Actinomycetota
Intrasporangium calvum DSM 43043 [CP002343]
433069
433158
+
Ser
CGA
[Ensembl]
¡û
>W11138450
AEIQ01000066
Actinomycetota
Dermacoccus sp. Ellin185 [AEIQ]
8690
8779
+
Ser
CGA
[ENA]
¡û
>W1511534735
JYOE01000013
Actinomycetota
Terrabacter sp. 28 [JYOE]
179380
179291
-
Ser
CGA
[ENA]
¡û
>W1511568139
LAIR01000002
Actinomycetota
Luteipulveratus halotolerans C296001 [LAIR]
131943
131854
-
Ser
CGA
[ENA]
¡û
>W1511570106
LAKL01000026
Actinomycetota
Clavibacter nebraskensis subsp. nebraskensis DOAB 397 [LAKL]
264088
263999
-
Ser
CGA
[ENA]
¡û
>W121126451
BAGZ01000009
Actinomycetota
Austwickia chelonae NBRC 105200 [BAGZ]
154807
154716
-
Ser
CGA
[ENA]
¡û
>W1610062587
BCNQ01000096
Actinomycetota
Piscicoccus intestinalis NBRC 104926 [BCNQ]
18348
18437
+
Ser
CGA
[ENA]
¡û
>C131019547
HE614873
Actinomycetota
Clavibacter nebraskensis NCPPB 2581 type strain: NCPPB 2581 [HE614873]
2841563
2841474
-
Ser
CGA
[Ensembl]
¡û
>W1610725260
LMER01000020
Actinomycetota
Angustibacter sp. Root456 [LMER]
210080
209991
-
Ser
CGA
[ENA]
¡û
>W1610729173
LMHU01000005
Actinomycetota
Terrabacter sp. Root181 [LMHU]
624477
624566
+
Ser
CGA
[ENA]
¡û
>W1610730517
LMIW01000009
Actinomycetota
Terrabacter sp. Root85 [LMIW]
448240
448329
+
Ser
CGA
[ENA]
¡û
>W1610867042
LQXA01000030
Actinomycetota
Clavibacter michiganensis subsp. tessellarius [LQXA]
73724
73813
+
Ser
CGA
[ENA]
¡û
>W1710060063
BCNQ01000096
Actinomycetota
Piscicoccus intestinalis NBRC 104926 [BCNQ]
18348
18437
+
Ser
CGA
[ENA]
¡û
>W1710555177
FOJD01000004
Actinomycetota
Austwickia chelonae [FOJD]
154905
154814
-
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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