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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.284115 (87 seq.)
>W1711126342
LUOL01000095
Gammaproteobacteria
Marinobacter sp. REDSEA-S21_B2N3 [LUOL]
3583
3508
-
Val
TAC
[ENA]
¡û
>W1711126344
LUOL01000095
Gammaproteobacteria
Marinobacter sp. REDSEA-S21_B2N3 [LUOL]
3342
3267
-
Val
TAC
[ENA]
¡û
>W1711227967
LXWE01000001
Gammaproteobacteria
Alteromonadaceae bacterium XY-R5 [LXWE]
212815
212890
+
Val
TAC
[ENA]
¡û
>W1711227968
LXWE01000001
Gammaproteobacteria
Alteromonadaceae bacterium XY-R5 [LXWE]
212925
213000
+
Val
TAC
[ENA]
¡û
>W1711227970
LXWE01000001
Gammaproteobacteria
Alteromonadaceae bacterium XY-R5 [LXWE]
213125
213200
+
Val
TAC
[ENA]
¡û
>W1711229537
LXYN01000023
Gammaproteobacteria
Marinobacter sp. EhN04 [LXYN]
260773
260848
+
Val
TAC
[ENA]
¡û
>W1711229539
LXYN01000023
Gammaproteobacteria
Marinobacter sp. EhN04 [LXYN]
261016
261091
+
Val
TAC
[ENA]
¡û
>C171016797
CP012418
Gammaproteobacteria
Kangiella sediminilitoris KCTC 23892 [CP012418]
661827
661902
+
Val
TAC
-
¡û
>C171016830
CP012418
Gammaproteobacteria
Kangiella sediminilitoris KCTC 23892 [CP012418]
1095395
1095320
-
Val
TAC
-
¡û
>W131169958
ARFE01000002
Gammaproteobacteria
Kangiella aquimarina DSM 16071 [ARFE]
836912
836987
+
Val
TAC
[ENA]
¡û
>W131169976
ARFE01000002
Gammaproteobacteria
Kangiella aquimarina DSM 16071 [ARFE]
1307724
1307649
-
Val
TAC
[ENA]
¡û
>W131171024
ARFX01000032
Gammaproteobacteria
Algicola sagamiensis DSM 14643 [ARFX]
100905
100830
-
Val
TAC
[ENA]
¡û
>W131171026
ARFX01000032
Gammaproteobacteria
Algicola sagamiensis DSM 14643 [ARFX]
100721
100646
-
Val
TAC
[ENA]
¡û
>w027868
ABCP01000050
Gammaproteobacteria
Marinobacter algicola DG893 [ABCP]
19850
19778
-
Val
TAC
[ENA]
¡û
>w023527
AAXY01000002
Gammaproteobacteria
Marinobacter sp. ELB17 [AAXY]
145795
145718
-
Val
TAC
[ENA]
¡û
>WENV180346543
OBLN01149624
[OBLN] sediment metagenome; sediment
277
352
+
Val
TAC
[ENA]
¢þ
>WENV181234414
OFEU01000106
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
47357
47282
-
Val
TAC
[ENA]
¢þ
>WENV181321392
OFKM01000028
[OFKM] marine metagenome; sea ice
3379
3304
-
Val
TAC
[ENA]
¢þ
>WENV182578730
OJGP01000821
[OJGP] seawater metagenome; Sea water
4727
4802
+
Val
TAC
[ENA]
¢þ
>WENV182585132
OJHH01001825
[OJHH] seawater metagenome; Sea water
3143
3068
-
Val
TAC
[ENA]
¢þ
>WENV182587395
OJHM01003035
[OJHM] seawater metagenome; Sea water
2156
2081
-
Val
TAC
[ENA]
¢þ
>WENV182588527
OJHU01001362
[OJHU] seawater metagenome; Sea water
1445
1520
+
Val
TAC
[ENA]
¢þ
>WENV182592985
OJIS01004118
[OJIS] seawater metagenome; Sea water
78
153
+
Val
TAC
[ENA]
¢þ
>WENV170016362
AZIK01001216
[AZIK] marine sediment metagenome; enrichment culture of sample MGS-ANC(AMM) from oil contaminated site at the Ancona Port
2981
3056
+
Val
TAC
[ENA]
¢þ
>WENV170378619
CETV01034796
[CETV] marine metagenome genome assembly TARA_133_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
186
111
-
Val
TAC
[ENA]
¢þ
>WENV170673051
LAZR01004983
[LAZR] marine sediment metagenome; Loki non-amplified sample from Loki's castle hydrothermal vent sediment
1070
995
-
Val
TAC
[ENA]
¢þ
>WENV170735508
LULL01002860
[LULL] marine metagenome; Red Sea water column Station 149 - depth 500m
1088
1163
+
Val
TAC
[ENA]
¢þ
>WENV170735510
LULL01002860
[LULL] marine metagenome; Red Sea water column Station 149 - depth 500m
1329
1404
+
Val
TAC
[ENA]
¢þ
>WENV170761071
LUMU01007106
[LUMU] marine metagenome; Red Sea water column Station 192 - depth 100m
1203
1128
-
Val
TAC
[ENA]
¢þ
>W09109222
ABUB01000003
Gammaproteobacteria
Kangiella koreensis DSM 16069 [ABUB]
515102
515027
-
Val
TAC
[ENA]
¡û
>W09109232
ABUB01000007
Gammaproteobacteria
Kangiella koreensis DSM 16069 [ABUB]
141320
141395
+
Val
TAC
[ENA]
¡û
>WENV170878809
MDTC01083794
[MDTC] marine metagenome; seawater
85942
85867
-
Val
TAC
[ENA]
¢þ
>WENV170932359
MDTG01201302
[MDTG] marine metagenome; seawater
222
147
-
Val
TAC
[ENA]
¢þ
>WENV170938907
MDTG01316904
[MDTG] marine metagenome; seawater
72
147
+
Val
TAC
[ENA]
¢þ
>WENV170962335
MRWF01012478
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
1810
1885
+
Val
TAC
[ENA]
¢þ
>WENV170962337
MRWF01012478
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
2048
2123
+
Val
TAC
[ENA]
¢þ
>WENV170962727
MRWF01025256
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
8383
8458
+
Val
TAC
[ENA]
¢þ
>WENV170962729
MRWF01025256
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
8625
8700
+
Val
TAC
[ENA]
¢þ
>WENV170962758
MRWF01025735
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
1917
1992
+
Val
TAC
[ENA]
¢þ
>WENV170962760
MRWF01025735
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
2155
2230
+
Val
TAC
[ENA]
¢þ
>WENV170964065
MRWG01002641
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
1429
1502
+
Val
TAC
[ENA]
¢þ
>WENV170964514
MRWG01015596
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
1648
1573
-
Val
TAC
[ENA]
¢þ
>WENV170964516
MRWG01015596
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
1410
1335
-
Val
TAC
[ENA]
¢þ
>WENV170964843
MRWG01057080
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
74
1
-
Val
TAC
[ENA]
¢þ
>C181113445
CP025120
Gammaproteobacteria
Kangiella profundi FT102 [CP025120]
1482883
1482958
+
Val
TAC
-
¡û
>C181113452
CP025120
Gammaproteobacteria
Kangiella profundi FT102 [CP025120]
1944116
1944041
-
Val
TAC
-
¡û
>C181136190
CP026604
Gammaproteobacteria
Saccharobesus litoralis CCB-QB4 [CP026604]
4228091
4228166
+
Val
TAC
-
¡û
>C181136191
CP026604
Gammaproteobacteria
Saccharobesus litoralis CCB-QB4 [CP026604]
4228197
4228272
+
Val
TAC
-
¡û
>C181136192
CP026604
Gammaproteobacteria
Saccharobesus litoralis CCB-QB4 [CP026604]
4228304
4228379
+
Val
TAC
-
¡û
>C191081727
CP031848
Gammaproteobacteria
Marinobacter sp. Arc7-DN-1 [CP031848]
1085882
1085807
-
Val
TAC
-
¡û
>C191081729
CP031848
Gammaproteobacteria
Marinobacter sp. Arc7-DN-1 [CP031848]
1085655
1085580
-
Val
TAC
-
¡û
>W1911584769
PIPK01000001
Gammaproteobacteria
Aliidiomarina maris CF12-14 [PIPK]
416874
416799
-
Val
TAC
[ENA]
¡û
>W1911584840
PIPL01000001
Gammaproteobacteria
Aliidiomarina minuta MLST1 [PIPL]
1116643
1116568
-
Val
TAC
[ENA]
¡û
>W1911584841
PIPL01000001
Gammaproteobacteria
Aliidiomarina minuta MLST1 [PIPL]
1116502
1116427
-
Val
TAC
[ENA]
¡û
>W1911584842
PIPL01000001
Gammaproteobacteria
Aliidiomarina minuta MLST1 [PIPL]
1116365
1116290
-
Val
TAC
[ENA]
¡û
>W1911717902
QQTG01000001
Gammaproteobacteria
Kangiella sp. HD9-110m-PIT-SAG07 [QQTG]
18775
18700
-
Val
TAC
[ENA]
¡û
>W1810058529
PDJM01000001
Gammaproteobacteria
Marinobacter sp. LV10R520-4 [PDJM]
2725066
2725141
+
Val
TAC
[ENA]
¡û
>W1810425747
PYVH01000020
Gammaproteobacteria
Marinobacter sp. B9-2 [PYVH]
38116
38191
+
Val
TAC
[ENA]
¡û
>W1810425749
PYVH01000020
Gammaproteobacteria
Marinobacter sp. B9-2 [PYVH]
38358
38433
+
Val
TAC
[ENA]
¡û
>W1810628284
QICH01000001
Gammaproteobacteria
Kangiella spongicola ATCC BAA-2076 [QICH]
205719
205644
-
Val
TAC
[ENA]
¡û
>W1810628312
QICH01000003
Gammaproteobacteria
Kangiella spongicola ATCC BAA-2076 [QICH]
248243
248168
-
Val
TAC
[ENA]
¡û
>W1810694579
QLMD01000001
Gammaproteobacteria
Aliidiomarina maris CGMCC 1.15366 [QLMD]
417270
417195
-
Val
TAC
[ENA]
¡û
>W1810701320
QMED01000001
Gammaproteobacteria
Algibacillus agarilyticus RQJ05 [QMED]
92725
92800
+
Val
TAC
[ENA]
¡û
>W1810701321
QMED01000001
Gammaproteobacteria
Algibacillus agarilyticus RQJ05 [QMED]
92833
92908
+
Val
TAC
[ENA]
¡û
>W1810701322
QMED01000001
Gammaproteobacteria
Algibacillus agarilyticus RQJ05 [QMED]
92949
93024
+
Val
TAC
[ENA]
¡û
>W1810725119
QOCH01000015
Gammaproteobacteria
Marinobacter sp. F3R11 [QOCH]
2638
2563
-
Val
TAC
[ENA]
¡û
>W1810725121
QOCH01000015
Gammaproteobacteria
Marinobacter sp. F3R11 [QOCH]
2409
2334
-
Val
TAC
[ENA]
¡û
>C151074700
CP010975
Gammaproteobacteria
Kangiella geojedonensis YCS-5 [CP010975]
634063
634138
+
Val
TAC
[Ensembl]
¡û
>C151074734
CP010975
Gammaproteobacteria
Kangiella geojedonensis YCS-5 [CP010975]
1103506
1103431
-
Val
TAC
[Ensembl]
¡û
>ENV09001716
ACQI01003520
Hydrothermal vent metagenome LCHCB.C1
41
116
+
Val
TAC
[ENA]
¡û
>ENV09001718
ACQI01003520
Hydrothermal vent metagenome LCHCB.C1
419
494
+
Val
TAC
[ENA]
¡û
>C10108009
CP001707
Gammaproteobacteria
Kangiella koreensis DSM 16069 [CP001707]
1582393
1582468
+
Val
TAC
[Ensembl]
¡û
>C10108017
CP001707
Gammaproteobacteria
Kangiella koreensis DSM 16069 [CP001707]
2102842
2102767
-
Val
TAC
[Ensembl]
¡û
>W1511677323
LFBU01000001
Gammaproteobacteria
Marinobacter subterrani JG233 [LFBU]
1254819
1254744
-
Val
TAC
[ENA]
¡û
>W1511677325
LFBU01000001
Gammaproteobacteria
Marinobacter subterrani JG233 [LFBU]
1254591
1254516
-
Val
TAC
[ENA]
¡û
>C131005673
CP003735
Gammaproteobacteria
Marinobacter sp. BSs20148 [CP003735]
1022861
1022936
+
Val
TAC
[Ensembl]
¡û
>W1610937275
LUOL01000095
Gammaproteobacteria
Marinobacter sp. REDSEA-S21_B2N3 [LUOL]
3583
3508
-
Val
TAC
[ENA]
¡û
>W1610937277
LUOL01000095
Gammaproteobacteria
Marinobacter sp. REDSEA-S21_B2N3 [LUOL]
3342
3267
-
Val
TAC
[ENA]
¡û
>W1611011931
LXWE01000001
Gammaproteobacteria
Alteromonadaceae bacterium XY-R5 [LXWE]
212815
212890
+
Val
TAC
[ENA]
¡û
>W1611011932
LXWE01000001
Gammaproteobacteria
Alteromonadaceae bacterium XY-R5 [LXWE]
212925
213000
+
Val
TAC
[ENA]
¡û
>W1611011934
LXWE01000001
Gammaproteobacteria
Alteromonadaceae bacterium XY-R5 [LXWE]
213125
213200
+
Val
TAC
[ENA]
¡û
>W1611013407
LXYN01000023
Gammaproteobacteria
Marinobacter sp. EhN04 [LXYN]
260773
260848
+
Val
TAC
[ENA]
¡û
>W1611013409
LXYN01000023
Gammaproteobacteria
Marinobacter sp. EhN04 [LXYN]
261016
261091
+
Val
TAC
[ENA]
¡û
>W1710528413
FNNE01000012
Gammaproteobacteria
Marinobacter mobilis [FNNE]
64364
64439
+
Val
TAC
[ENA]
¡û
>W1710560210
FONF01000005
Gammaproteobacteria
Marinobacter sp. DSM 26671 [FONF]
24158
24083
-
Val
TAC
[ENA]
¡û
>W1710560212
FONF01000005
Gammaproteobacteria
Marinobacter sp. DSM 26671 [FONF]
23916
23841
-
Val
TAC
[ENA]
¡û
>W1710569180
FOUE01000003
Gammaproteobacteria
Marinobacter zhejiangensis [FOUE]
573831
573906
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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