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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.284126 (54 seq.)
>W131181450
AROI01000014
Gammaproteobacteria
Halopseudomonas pelagia CL-AP6 [AROI]
121895
121970
+
Ala
GGC
[ENA]
¡û
>W131181452
AROI01000014
Gammaproteobacteria
Halopseudomonas pelagia CL-AP6 [AROI]
122164
122239
+
Ala
GGC
[ENA]
¡û
>W1711335151
MBQR01000205
Gammaproteobacteria
Vibrio cholerae O1 [MBQR]
89
164
+
Ala
GGC
[ENA]
¡û
>W1711335217
MBQS01000225
Gammaproteobacteria
Vibrio cholerae O1 [MBQS]
91
166
+
Ala
GGC
[ENA]
¡û
>W1711786396
MWGF01000015
Gammaproteobacteria
Vibrio cholerae [MWGF]
98
173
+
Ala
GGC
[ENA]
¡û
>W1711860305
MYJG01000064
Gammaproteobacteria
Salmonella enterica [MYJG]
215
140
-
Ala
TGC
[ENA]
¡û
>C171018714
CP012745
Gammaproteobacteria
Klebsiella pneumoniae subsp. pneumoniae TGH13 [CP012745]
5159434
5159359
-
Ala
GGC
-
¡û
>C171022843
CP013311
Gammaproteobacteria
Vibrio cholerae E1320 [CP013311]
100709
100634
-
Ala
GGC
-
¡û
>W131034954
AJRX01000035
Gammaproteobacteria
Vibrio cholerae HE-40 [AJRX]
74
149
+
Ala
GGC
[ENA]
¡û
>W131106949
APFK01000085
Gammaproteobacteria
Vibrio cholerae O1 str. 116063 [APFK]
80
155
+
Ala
GGC
[ENA]
¡û
>W131107274
APFO01000005
Gammaproteobacteria
Vibrio cholerae O1 str. AG-8040 [APFO]
95
170
+
Ala
GGC
[ENA]
¡û
>W131107832
APFV01000068
Gammaproteobacteria
Vibrio cholerae O1 str. EM-1536 [APFV]
97
172
+
Ala
GGC
[ENA]
¡û
>w019088
AATY01000032
Gammaproteobacteria
Vibrio cholerae AM-19226 [AATY]
1654
1731
+
Ala
GGC
[ENA]
¡û
>W141153531
AXDK01000228
Gammaproteobacteria
Franconibacter helveticus 513 [AXDK]
6813
6738
-
Ala
TGC
[ENA]
¡û
>WENV182561178
OJDV01011516
[OJDV] seawater metagenome; Sea water
1256
1181
-
Ala
TGC
[ENA]
¢þ
>WENV182577564
OJGG01005914
[OJGG] seawater metagenome; Sea water
870
795
-
Ala
TGC
[ENA]
¢þ
>WENV182591352
OJIM01000654
[OJIM] seawater metagenome; Sea water
1171
1096
-
Ala
TGC
[ENA]
¢þ
>WENV170014881
AZIC01002150
[AZIC] marine sediment metagenome; sample MGS-MES from oil contaminated site at the harbour of Messina (Sicily, Italy)
253
178
-
Ala
TGC
[ENA]
¢þ
>WENV170672190
LAZR01000024
[LAZR] marine sediment metagenome; Loki non-amplified sample from Loki's castle hydrothermal vent sediment
150149
150224
+
Ala
GGC
[ENA]
¢þ
>WENV170672670
LAZR01000781
[LAZR] marine sediment metagenome; Loki non-amplified sample from Loki's castle hydrothermal vent sediment
21090
21165
+
Ala
GGC
[ENA]
¢þ
>WENV170672672
LAZR01000781
[LAZR] marine sediment metagenome; Loki non-amplified sample from Loki's castle hydrothermal vent sediment
21367
21442
+
Ala
GGC
[ENA]
¢þ
>WENV170690307
LFRM01335005
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
159
234
+
Ala
GGC
[ENA]
¢þ
>WENV170718434
LSQX01075355
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
5874
5949
+
Ala
GGC
[ENA]
¢þ
>WENV170763519
LWDU01011524
[LWDU] hydrothermal vent metagenome; deep sea hydrothermal plume seawater
983
1058
+
Ala
GGC
[ENA]
¢þ
>W141462358
JFHS01000002
Gammaproteobacteria
Halopseudomonas bauzanensis [JFHS]
9537
9462
-
Ala
GGC
[ENA]
¡û
>W141462360
JFHS01000002
Gammaproteobacteria
Halopseudomonas bauzanensis [JFHS]
9243
9168
-
Ala
GGC
[ENA]
¡û
>C181058143
CP022103
Gammaproteobacteria
Vibrio anguillarum CNEVA NB11008 [CP022103, CP022104]
804802
804877
+
Ala
GGC
-
¡û
>C181075651
CP023054
Gammaproteobacteria
Vibrio anguillarum VIB43 [CP023054, CP023055]
779043
779118
+
Ala
GGC
-
¡û
>C181220834
LT897797
Gammaproteobacteria
Vibrio cholerae [LT897797, LT897798]
48008
48083
+
Ala
GGC
-
¡û
>W09103727
AAKG01000001
Gammaproteobacteria
Vibrio cholerae O395 [AAKG]
2613909
2613834
-
Ala
GGC
[ENA]
¡û
>W09124496
ACHV01000001
Gammaproteobacteria
Vibrio cholerae bv. albensis VL426 [ACHV]
1724958
1725033
+
Ala
GGC
[ENA]
¡û
>C09110795
CP001233
Gammaproteobacteria
Vibrio cholerae M66-2 [CP001233, CP001234]
55385
55460
+
Ala
GGC
[Ensembl]
¡û
>W1910371864
FUFT01000025
Gammaproteobacteria
Vibrio palustris CECT 9027 [FUFT]
268
343
+
Ala
GGC
[ENA]
¡û
>W1910378611
FULF01000196
Gammaproteobacteria
Vibrio gazogenes type strain: CECT 5068 [FULF]
282
357
+
Ala
GGC
[ENA]
¡û
>W1910923667
NIHB01000010
Gammaproteobacteria
Marinicella litoralis KMM 3900 [NIHB]
3788
3713
-
Ala
TGC
[ENA]
¡û
>W1911190131
NQWO01000023
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Blockley NCTR361 [NQWO]
59216
59291
+
Ala
TGC
[ENA]
¡û
>W1911568267
PCQD01000004
Gammaproteobacteria
Pseudomonas sp. MYb185 [PCQD]
141075
141150
+
Ala
GGC
[ENA]
¡û
>W1911568269
PCQD01000004
Gammaproteobacteria
Pseudomonas sp. MYb185 [PCQD]
141371
141446
+
Ala
GGC
[ENA]
¡û
>W1810142603
PIIR01000031
Gammaproteobacteria
Escherichia coli F_30_1_R8 [PIIR]
3131
3206
+
Ala
TGC
[ENA]
¡û
>W1810491805
QBCZ01000026
Gammaproteobacteria
Escherichia coli 36991 [QBCZ]
2517
2442
-
Ala
GGC
[ENA]
¡û
>W1510147188
CGHE01000042
Gammaproteobacteria
Vibrio cholerae [CGHE]
56
131
+
Ala
GGC
[ENA]
¡û
>W1511385099
JSSZ01000112
Gammaproteobacteria
Vibrio cholerae 2010AA-148 [JSSZ]
79
154
+
Ala
GGC
[ENA]
¡û
>W1511387218
JSUD01000102
Gammaproteobacteria
Vibrio cholerae 2012HC-35 [JSUD]
132
57
-
Ala
GGC
[ENA]
¡û
>W1511644072
LDXB01000023
Gammaproteobacteria
Escherichia coli 36493 [LDXB]
210520
210595
+
Ala
GGC
[ENA]
¡û
>W1511702480
LGNM01000002
Gammaproteobacteria
Vibrio cholerae O1 EM-1690 [LGNM]
104
179
+
Ala
GGC
[ENA]
¡û
>W1511705196
LGOT01000051
Gammaproteobacteria
Vibrio cholerae O1 NHCM-053 [LGOT]
106
181
+
Ala
GGC
[ENA]
¡û
>C161065631
CP014043
Gammaproteobacteria
Vibrio mimicus FDAARGOS_112 [CP014042, CP014043]
701992
701917
-
Ala
TGC
-
¡û
>C161093387
CP016027
Gammaproteobacteria
Halothiobacillus sp. LS2 [CP016027]
565417
565492
+
Ala
GGC
[Ensembl]
¡û
>W121020299
AGUP01000015
Gammaproteobacteria
Vibrio cholerae HC-33A2 [AGUP]
85
160
+
Ala
GGC
[ENA]
¡û
>W1610927994
LUCN01000002
Gammaproteobacteria
Vibrio cholerae O1 biovar El Tor [LUCN]
483
558
+
Ala
GGC
[ENA]
¡û
>W1710551998
FOGN01000005
Gammaproteobacteria
Halopseudomonas bauzanensis [FOGN]
298444
298519
+
Ala
GGC
[ENA]
¡û
>W1710552000
FOGN01000005
Gammaproteobacteria
Halopseudomonas bauzanensis [FOGN]
298738
298813
+
Ala
GGC
[ENA]
¡û
>W1710569015
FOUA01000005
Gammaproteobacteria
Halopseudomonas bauzanensis [FOUA]
4503
4428
-
Ala
GGC
[ENA]
¡û
>W1710569017
FOUA01000005
Gammaproteobacteria
Halopseudomonas bauzanensis [FOUA]
4209
4134
-
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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