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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.284151 (61 seq.)
>A171000210
CP000855
Euryarchaeota
Thermococcus onnurineus NA1 [CP000855]
1803791
1803716
-
Gln
CTG
-
¡û
>A171000475
CP001398
Euryarchaeota
Thermococcus gammatolerans EJ3 EJ3; DSM 15229 [CP001398]
476385
476460
+
Gln
CTG
-
¡û
>A171000677
CP001463
Euryarchaeota
Thermococcus sibiricus MM 739 [CP001463]
67863
67938
+
Gln
CTG
-
¡û
>A171000706
CP001463
Euryarchaeota
Thermococcus sibiricus MM 739 [CP001463]
1426840
1426765
-
Gln
TTG
-
¡û
>A171001883
CP002372
Euryarchaeota
Thermococcus barophilus MP [CP002372]
1785710
1785635
-
Gln
CTG
-
¡û
>A171001886
CP002372
Euryarchaeota
Thermococcus barophilus MP [CP002372]
1662332
1662257
-
Gln
TTG
-
¡û
>A171002168
CP002670
Euryarchaeota
Pyrococcus sp. NA2 [CP002670]
1093239
1093314
+
Gln
CTG
-
¡û
>A171002300
CP002779
Euryarchaeota
Pyrococcus yayanosii CH1 [CP002779]
1079866
1079941
+
Gln
CTG
-
¡û
>A171002669
CP002952
Euryarchaeota
Thermococcus sp. AM4 [CP002952]
1921936
1922011
+
Gln
CTG
-
¡û
>A171003262
CP003534
Euryarchaeota
Pyrococcus sp. ST04 [CP003534]
617754
617829
+
Gln
CTG
-
¡û
>A171003311
CP003651
Euryarchaeota
Thermococcus cleftensis CL1 [CP003651]
683858
683933
+
Gln
CTG
-
¡û
>A171003382
CP003685
Euryarchaeota
Pyrococcus furiosus COM1 [CP003685]
138763
138688
-
Gln
CTG
-
¡û
>A171003785
CP006019
Euryarchaeota
Palaeococcus pacificus DY20341 [CP006019]
1684191
1684116
-
Gln
TTG
-
¡û
>A171003889
CP006670
Euryarchaeota
Thermococcus litoralis DSM 5473 [CP006670]
1587765
1587690
-
Gln
TTG
-
¡û
>A171003894
CP006670
Euryarchaeota
Thermococcus litoralis DSM 5473 [CP006670]
825279
825204
-
Undet
NTG
-
¡û
>A171004053
CP006965
Euryarchaeota
Thermococcus paralvinellae ES1 [CP006965]
1864998
1864923
-
Gln
CTG
-
¡û
>A171004056
CP006965
Euryarchaeota
Thermococcus paralvinellae ES1 [CP006965]
1744272
1744197
-
Gln
TTG
-
¡û
>A171004218
CP007140
Euryarchaeota
Thermococcus guaymasensis DSM 11113 [CP007140]
1136032
1136107
+
Gln
CTG
-
¡û
>A171004278
CP007264
Euryarchaeota
Thermococcus nautili 30-1 [CP007264]
1319924
1319999
+
Gln
CTG
-
¡û
>A171004435
CP008887
Euryarchaeota
Thermococcus eurythermalis A501 [CP008887]
744554
744629
+
Gln
CTG
-
¡û
>A171005865
CP010835
Euryarchaeota
Pyrococcus kukulkanii NCB100 [CP010835]
363848
363923
+
Gln
CTG
-
¡û
>A171006354
CP012200
Euryarchaeota
Thermococcus sp. 2319x1 [CP012200]
1316710
1316785
+
Gln
TTG
-
¡û
>A171006358
CP012200
Euryarchaeota
Thermococcus sp. 2319x1 [CP012200]
1951946
1952021
+
Gln
CTG
-
¡û
>A171006480
CP013050
Euryarchaeota
Thermococcus barophilus CH5 [CP013050]
2068236
2068161
-
Gln
CTG
-
¡û
>A171006483
CP013050
Euryarchaeota
Thermococcus barophilus CH5 [CP013050]
1883137
1883062
-
Gln
TTG
-
¡û
>A171006582
CP014750
Euryarchaeota
Thermococcus peptonophilus OG-1 [CP014750]
1266991
1267066
+
Gln
CTG
-
¡û
>A171006671
CP015520
Euryarchaeota
Thermococcus piezophilus CDGS [CP015520]
1044772
1044697
-
Gln
CTG
-
¡û
>A171007125
CP021848
Euryarchaeota
Thermococcus sp. 5-4 [CP021848]
61547
61472
-
Gln
CTG
-
¡û
>A171007522
LN999010
Euryarchaeota
Thermococcus chitonophagus [LN999010]
1263126
1263051
-
Gln
CTG
-
¡û
>At1820
AL096836
Euryarchaeota
Pyrococcus abyssi [AL096836]
1428279
1428204
-
Gln
CTG
[Ensembl]
¡û
>At1849
AE009950
Euryarchaeota
Pyrococcus furiosus DSM 3638 [AE009950]
338038
337963
-
Gln
CTG
[Ensembl]
¡û
>At1875
BA000001
Euryarchaeota
Pyrococcus horikoshii OT3 [BA000001]
505688
505763
+
Gln
CTG
[Ensembl]
¡û
>At1958
AP006878
Euryarchaeota
Thermococcus kodakarensis KOD1 [AP006878]
1499020
1498945
-
Gln
CTG
[Ensembl]
¡û
>WENV170675681
LDZQ01000004
[LDZQ] terrestrial metagenome; oil reservoir sample I2
127
202
+
Gln
CTG
[ENA]
¢þ
>WENV170675982
LDZQ01001619
[LDZQ] terrestrial metagenome; oil reservoir sample I2
5914
5839
-
Gln
TTG
[ENA]
¢þ
>WENV170676015
LDZR01000027
[LDZR] terrestrial metagenome; oil reservoir sample K2
14066
13991
-
Gln
CTG
[ENA]
¢þ
>WENV170676192
LDZR01001547
[LDZR] terrestrial metagenome; oil reservoir sample K2
340
415
+
Gln
TTG
[ENA]
¢þ
>WENV170676303
LDZR01002229
[LDZR] terrestrial metagenome; oil reservoir sample K2
1816
1741
-
Gln
CTG
[ENA]
¢þ
>WENV170676320
LDZR01002245
[LDZR] terrestrial metagenome; oil reservoir sample K2
10470
10545
+
Gln
TTG
[ENA]
¢þ
>WENV170676715
LDZS01002031
[LDZS] terrestrial metagenome; oil reservoir sample K3
19705
19630
-
Gln
TTG
[ENA]
¢þ
>WENV170676731
LDZS01002057
[LDZS] terrestrial metagenome; oil reservoir sample K3
11822
11897
+
Gln
CTG
[ENA]
¢þ
>W1910200306
FJMQ01000029
Euryarchaeota
Thermococcus litoralis [FJMQ]
12086
12011
-
Gln
CTG
[ENA]
¡û
>W1910200332
FJMQ01000128
Euryarchaeota
Thermococcus litoralis [FJMQ]
222
147
-
Gln
TTG
[ENA]
¡û
>W1910229984
FOIW01000002
Euryarchaeota
Thermococcus thioreducens OGL-20 [FOIW]
700030
700105
+
Gln
CTG
[ENA]
¡û
>W1610000711
ABSF01000006
Euryarchaeota
Thermococcus barophilus MP [ABSF]
2139
2064
-
Gln
CTG
[ENA]
¡û
>W1610000728
ABSF01000012
Euryarchaeota
Thermococcus barophilus MP [ABSF]
115680
115755
+
Gln
TTG
[ENA]
¡û
>W1610000879
ABXN01000011
Euryarchaeota
Thermococcus sp. AM4 [ABXN]
54551
54626
+
Gln
CTG
[ENA]
¡û
>W1610004918
AHVB01000035
Euryarchaeota
Thermococcus litoralis DSM 5473 [AHVB]
31946
32021
+
Gln
TTG
[ENA]
¡û
>W1610004938
AHVB01000063
Euryarchaeota
Thermococcus litoralis DSM 5473 [AHVB]
100313
100388
+
Gln
TTG
[ENA]
¡û
>W1610005309
AJLF01000003
Euryarchaeota
Thermococcus zilligii AN1 [AJLF]
84426
84501
+
Gln
CTG
[ENA]
¡û
>W1610005599
AKID01000122
Euryarchaeota
Thermococcus sp. PK [AKID]
198
273
+
Gln
CTG
[ENA]
¡û
>W1610005600
AKID01000127
Euryarchaeota
Thermococcus sp. PK [AKID]
5077
5002
-
Gln
TTG
[ENA]
¡û
>W1610548857
JXCG01000001
Euryarchaeota
Thermococcus sp. EP1 [JXCG]
197498
197423
-
Gln
CTG
[ENA]
¡û
>W1610548891
JXCG01000013
Euryarchaeota
Thermococcus sp. EP1 [JXCG]
11756
11831
+
Gln
TTG
[ENA]
¡û
>W1610612444
LGET01000078
Euryarchaeota
Thermococcales archaeon 44_46 [LGET]
5914
5839
-
Gln
TTG
[ENA]
¡û
>W1610612808
LGFD01000008
Euryarchaeota
Thermococcus sibiricus [LGFD]
1816
1741
-
Gln
CTG
[ENA]
¡û
>W1610612825
LGFD01000024
Euryarchaeota
Thermococcus sibiricus [LGFD]
10470
10545
+
Gln
TTG
[ENA]
¡û
>W1610613027
LGFJ01000002
Euryarchaeota
Thermococcus sp. 40_45 [LGFJ]
19705
19630
-
Gln
TTG
[ENA]
¡û
>W1610613043
LGFJ01000028
Euryarchaeota
Thermococcus sp. 40_45 [LGFJ]
11822
11897
+
Gln
CTG
[ENA]
¡û
>W1610638234
LIXN01000007
Euryarchaeota
Thermococcus thioreducens DSM 14981 [LIXN]
51133
51208
+
Gln
CTG
[ENA]
¡û
>W1610717931
LLYW01000025
Euryarchaeota
Thermococcus celericrescens DSM 17994 [LLYW]
81076
81151
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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