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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.284154 (46 seq.)
>A171001436
CP001994
Euryarchaeota
Methanohalophilus mahii DSM 5219 [CP001994]
562598
562670
+
Ala
TGC
-
¡û
>A171001440
CP001994
Euryarchaeota
Methanohalophilus mahii DSM 5219 [CP001994]
697161
697233
+
Ala
TGC
-
¡û
>A171001458
CP001994
Euryarchaeota
Methanohalophilus mahii DSM 5219 [CP001994]
1905608
1905536
-
Ala
TGC
-
¡û
>A171001605
CP002069
Euryarchaeota
Methanohalobium evestigatum Z-7303 [CP002069]
50229
50302
+
Ala
TGC
-
¡û
>A171001626
CP002069
Euryarchaeota
Methanohalobium evestigatum Z-7303 [CP002069]
1743838
1743765
-
Ala
TGC
-
¡û
>A171002992
CP003362
Euryarchaeota
Methanomethylovorans hollandica DSM 15978 [CP003362]
229086
229158
+
Ala
TGC
-
¡û
>A171003010
CP003362
Euryarchaeota
Methanomethylovorans hollandica DSM 15978 [CP003362]
2364356
2364284
-
Ala
TGC
-
¡û
>A171004379
CP008746
Euryarchaeota
Methanosarcina barkeri CM1 [CP008746]
1821180
1821108
-
Ala
TGC
-
¡û
>A171004534
CP009501
Euryarchaeota
Methanosarcina thermophila TM-1 [CP009501]
2186892
2186818
-
Ala
TGC
-
¡û
>A171004584
CP009502
Euryarchaeota
Methanosarcina thermophila CHTI-55 [CP009502]
1855303
1855377
+
Ala
TGC
-
¡û
>A171004621
CP009503
Euryarchaeota
Methanosarcina sp. WWM596 [CP009503]
1302423
1302495
+
Ala
TGC
-
¡û
>A171004673
CP009504
Euryarchaeota
Methanosarcina sp. WH1 [CP009504]
1202685
1202757
+
Ala
TGC
-
¡û
>A171005202
CP009515
Euryarchaeota
Methanosarcina lacustris Z-7289 [CP009515]
1746550
1746622
+
Ala
TGC
-
¡û
>A171005293
CP009517
Euryarchaeota
Methanosarcina barkeri 3 [CP009517]
54477
54549
+
Ala
TGC
-
¡û
>A171005399
CP009520
Euryarchaeota
Methanosarcina vacuolata Z-761 [CP009520]
1730180
1730252
+
Ala
TGC
-
¡û
>A171005454
CP009524
Euryarchaeota
Methanosarcina sp. Kolksee [CP009524]
1686286
1686358
+
Ala
TGC
-
¡û
>A171005517
CP009526
Euryarchaeota
Methanosarcina barkeri str. Wiesmoor [CP009526]
1350022
1350094
+
Ala
TGC
-
¡û
>A171005593
CP009528
Euryarchaeota
Methanosarcina barkeri MS [CP009528]
3093184
3093112
-
Ala
TGC
-
¡û
>A171005608
CP009530
Euryarchaeota
Methanosarcina barkeri 227 [CP009530]
52862
52934
+
Ala
TGC
-
¡û
>A171005642
CP009530
Euryarchaeota
Methanosarcina barkeri 227 [CP009530]
3034517
3034445
-
Ala
TGC
-
¡û
>A171006792
CP017921
Euryarchaeota
Methanohalophilus halophilus Z-7982 [CP017921]
811821
811893
+
Ala
TGC
-
¡û
>WENV170007318
AMWB02106094
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
6505
6433
-
Ala
TGC
[ENA]
¢þ
>At1494
CP000099
Euryarchaeota
Methanosarcina barkeri [CP000099]
4677224
4677152
-
Ala
TGC
[Ensembl]
¡û
>WENV170692924
LGOV01046269
[LGOV] marine sediment metagenome; sample #5579, elevator 3A push core 41 containing 12 cm of sediment, collected at Hydrate Ridge
275
203
-
Ala
TGC
[ENA]
¢þ
>WENV170695363
LGVE01083277
[LGVE] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
1003
931
-
Ala
TGC
[ENA]
¢þ
>WENV170699160
LGVF01491692
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
887
815
-
Ala
TGC
[ENA]
¢þ
>WENV170724606
LSQX01312133
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1386
1314
-
Ala
TGC
[ENA]
¢þ
>W1910228314
FNMU01000002
Euryarchaeota
Methanohalophilus halophilus Z-7982 [FNMU]
409308
409236
-
Ala
TGC
[ENA]
¡û
>W1910228332
FNMU01000004
Euryarchaeota
Methanohalophilus halophilus Z-7982 [FNMU]
260314
260242
-
Ala
TGC
[ENA]
¡û
>W1910228338
FNMU01000005
Euryarchaeota
Methanohalophilus halophilus Z-7982 [FNMU]
185983
186055
+
Ala
TGC
[ENA]
¡û
>W1910228346
FNMU01000008
Euryarchaeota
Methanohalophilus halophilus Z-7982 [FNMU]
63826
63898
+
Ala
TGC
[ENA]
¡û
>W1910471804
FXBN01000001
Euryarchaeota
Methanohalophilus portucalensis FDF-1 [FXBN]
329797
329725
-
Ala
TGC
[ENA]
¡û
>W1910471806
FXBN01000001
Euryarchaeota
Methanohalophilus portucalensis FDF-1 [FXBN]
271662
271590
-
Ala
TGC
[ENA]
¡û
>W1910569520
JJOW01000254
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.15 [JJOW]
18290
18362
+
Ala
TGC
[ENA]
¡û
>W1910569585
JJOY01000005
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.6 [JJOY]
195377
195449
+
Ala
TGC
[ENA]
¡û
>W1910569639
JJOZ01000016
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.8 [JJOZ]
398507
398579
+
Ala
TGC
[ENA]
¡û
>W1910571271
JJQF01000044
Euryarchaeota
Methanosarcina mazei 1.H.A.0.1 [JJQF]
130696
130768
+
Ala
TGC
[ENA]
¡û
>W1910582996
JWTK01000010
Euryarchaeota
Methanohalophilus portucalensis FDF-1 [JWTK]
3452
3380
-
Ala
TGC
[ENA]
¡û
>W1910635260
LMVP01000500
Euryarchaeota
Methanosarcina spelaei MC-15 [LMVP]
133
61
-
Ala
TGC
[ENA]
¡û
>W1911492151
OBDR01000020
Euryarchaeota
Methanohalophilus euhalobius WG-1MB [OBDR]
3453
3381
-
Ala
TGC
[ENA]
¡û
>W1911633785
PVBU01000022
Euryarchaeota
Methanohalophilus euhalobius DSM 10369 [PVBU]
3605
3533
-
Ala
TGC
[ENA]
¡û
>W1911653225
QBKB01000002
Euryarchaeota
Methanohalophilus profundi SLHTYRO [QBKB]
466901
466829
-
Ala
TGC
[ENA]
¡û
>W1610000053
AAAR03000069
Euryarchaeota
Methanosarcina barkeri str. fusaro [AAAR]
703
775
+
Ala
TGC
[ENA]
¡û
>W1610670235
LKAZ01000003
Euryarchaeota
Methanosarcina flavescens E03.2 [LKAZ]
160
234
+
Ala
TGC
[ENA]
¡û
>W1611052488
MAFX01000005
Euryarchaeota
Methanohalophilus sp. DAL1 [MAFX]
38140
38212
+
Ala
TGC
[ENA]
¡û
>ENV003044
CR937011
Environmental sample from ENV division of INSDC
18739
18662
-
Ala
TGC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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