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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.284214 (73 seq.)
>W1710860522
LMCY01000005
Betaproteobacteria
Massilia sp. Root335 [LMCY]
97131
97056
-
Val
TAC
[ENA]
¡û
>W1710861041
LMDJ01000003
Betaproteobacteria
Massilia sp. Root351 [LMDJ]
105477
105552
+
Val
TAC
[ENA]
¡û
>W1710861043
LMDJ01000003
Betaproteobacteria
Massilia sp. Root351 [LMDJ]
105720
105795
+
Val
TAC
[ENA]
¡û
>W1710861072
LMDJ01000023
Betaproteobacteria
Massilia sp. Root351 [LMDJ]
553180
553105
-
Val
TAC
[ENA]
¡û
>W1710862021
LMEC01000001
Betaproteobacteria
Massilia sp. Root418 [LMEC]
324772
324847
+
Val
TAC
[ENA]
¡û
>W1710862065
LMEC01000022
Betaproteobacteria
Massilia sp. Root418 [LMEC]
38784
38859
+
Val
TAC
[ENA]
¡û
>W1710862067
LMEC01000022
Betaproteobacteria
Massilia sp. Root418 [LMEC]
39024
39099
+
Val
TAC
[ENA]
¡û
>W131045989
AMSA01000002
Betaproteobacteria
Herbaspirillum rubrisubalbicans Os45 [AMSA]
303247
303322
+
Val
TAC
[ENA]
¡û
>W131046069
AMSB01000003
Betaproteobacteria
Herbaspirillum rubrisubalbicans Os34 [AMSB]
229407
229332
-
Val
TAC
[ENA]
¡û
>W131062288
ANJR01000020
Betaproteobacteria
Herbaspirillum huttiense subsp. putei IAM 15032 [ANJR]
486566
486491
-
Val
TAC
[ENA]
¡û
>W1711430744
MIJG01000008
Betaproteobacteria
Herbaspirillum camelliae WT00C [MIJG]
890714
890639
-
Val
TAC
[ENA]
¡û
>W1711765101
MUXB01000075
Betaproteobacteria
Herbaspirillum sp. VT-16-41 [MUXB]
10808
10883
+
Val
TAC
[ENA]
¡û
>W1712110262
NJGU01000004
Betaproteobacteria
Herbaspirillum robiniae HZ10 [NJGU]
532360
532435
+
Val
TAC
[ENA]
¡û
>W1712110316
NJGV01000005
Betaproteobacteria
Herbaspirillum aquaticum [NJGV]
8497
8572
+
Val
TAC
[ENA]
¡û
>C171021238
CP013136
Betaproteobacteria
Herbaspirillum seropedicae AU14040 [CP013136]
2918465
2918390
-
Val
TAC
-
¡û
>C171085352
CP018845
Betaproteobacteria
Herbaspirillum robiniae AA6 [CP018845]
729841
729916
+
Val
TAC
-
¡û
>W141003826
AEEC02000017
Betaproteobacteria
Herbaspirillum frisingense GSF30 [AEEC]
104750
104675
-
Val
TAC
[ENA]
¡û
>WENV181374810
OFQY01022948
[OFQY] wastewater metagenome; Exp Tend VB 10WW
609
534
-
Val
TAC
[ENA]
¢þ
>WENV181388433
OFRM01015978
[OFRM] wastewater metagenome; Exp Tend VB 0WW
1277
1352
+
Val
TAC
[ENA]
¢þ
>WENV181398665
OFSE01000742
[OFSE] wastewater metagenome; Exp Tend VB 50WW
8949
9024
+
Val
TAC
[ENA]
¢þ
>W141223494
BADI01000394
Betaproteobacteria
Herbaspirillum sp. B65 [BADI]
118
43
-
Val
TAC
[ENA]
¡û
>WENV183728120
PJTP01038834
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
227
302
+
Val
TAC
[ENA]
¢þ
>WENV183730192
PJTR01002918
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
1239
1314
+
Val
TAC
[ENA]
¢þ
>WENV183735219
PJUA01003858
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
122
47
-
Val
TAC
[ENA]
¢þ
>WENV183737895
PJUD01045584
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
981
1056
+
Val
TAC
[ENA]
¢þ
>WENV183741133
PJUF01044941
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
508
583
+
Val
TAC
[ENA]
¢þ
>WENV170558288
CXWL01061577
[CXWL] groundwater metagenome; biofilm material
17259
17334
+
Val
TAC
[ENA]
¢þ
>WENV170559148
CXWL01112017
[CXWL] groundwater metagenome; biofilm material
3374
3299
-
Val
TAC
[ENA]
¢þ
>WENV170559493
CXWL01125777
[CXWL] groundwater metagenome; biofilm material
79
4
-
Val
TAC
[ENA]
¢þ
>WENV170559566
CXWL01129463
[CXWL] groundwater metagenome; biofilm material
8781
8706
-
Val
TAC
[ENA]
¢þ
>WENV170559747
CXWL01145621
[CXWL] groundwater metagenome; biofilm material
202
127
-
Val
TAC
[ENA]
¢þ
>WENV170680787
LFEF01022794
[LFEF] freshwater metagenome; waterbloom
160529
160604
+
Val
TAC
[ENA]
¢þ
>C181187758
CP030092
Betaproteobacteria
Massilia sp. YMA4 [CP030092]
4928951
4928876
-
Val
TAC
-
¡û
>C191029369
CP024996
Betaproteobacteria
Herbaspirillum rubrisubalbicans DSM 11543 [CP024996]
3189183
3189108
-
Val
TAC
-
¡û
>C191124266
CP034395
Betaproteobacteria
Herbaspirillum seropedicae AU13965 [CP034395]
2842282
2842207
-
Val
TAC
-
¡û
>C191125949
CP034464
Betaproteobacteria
Undibacterium parvum DSM 23061 [CP034464]
3741168
3741243
+
Val
TAC
-
¡û
>C191156656
CP037993
Betaproteobacteria
Herbaspirillum huttiense NFYY 53159 [CP037993]
3043943
3043868
-
Val
TAC
-
¡û
>W141739249
JNNN01000042
Betaproteobacteria
Massilia sp. LC238 [JNNN]
6074
6149
+
Val
TAC
[ENA]
¡û
>W141811332
JPXI01000042
Betaproteobacteria
Massilia sp. BSC265 consociata [JPXI]
428854
428779
-
Val
TAC
[ENA]
¡û
>W1910577833
JUGD01000001
Betaproteobacteria
Herbaspirillum rubrisubalbicans Os38 [JUGD]
8795
8870
+
Val
TAC
[ENA]
¡û
>W1910578306
JWJC01000016
Betaproteobacteria
Herbaspirillum rubrisubalbicans Os44 [JWJC]
8694
8769
+
Val
TAC
[ENA]
¡û
>W1911802846
QYUP01000072
Betaproteobacteria
Massilia cavernae K1S02-61 [QYUP]
28180
28105
-
Val
TAC
[ENA]
¡û
>W1810062359
PDOB01000007
Betaproteobacteria
Massilia psychrophila JCM 30813 [PDOB]
95793
95718
-
Val
TAC
[ENA]
¡û
>W1810062402
PDOC01000001
Betaproteobacteria
Massilia eurypsychrophila JCM 30074 [PDOC]
96815
96890
+
Val
TAC
[ENA]
¡û
>W1810194045
PKOI01000014
Betaproteobacteria
Herbaspirillum sp. BH-1 [PKOI]
86604
86679
+
Val
TAC
[ENA]
¡û
>W1810486576
QAXZ01000001
Betaproteobacteria
Massilia sp. GV045 [QAXZ]
1134646
1134571
-
Val
TAC
[ENA]
¡û
>W1810486580
QAXZ01000002
Betaproteobacteria
Massilia sp. GV045 [QAXZ]
130471
130546
+
Val
TAC
[ENA]
¡û
>W1810486582
QAXZ01000002
Betaproteobacteria
Massilia sp. GV045 [QAXZ]
130714
130789
+
Val
TAC
[ENA]
¡û
>W1810487081
QAYI01000001
Betaproteobacteria
Massilia sp. GV016 [QAYI]
1029372
1029297
-
Val
TAC
[ENA]
¡û
>W1810487084
QAYI01000002
Betaproteobacteria
Massilia sp. GV016 [QAYI]
137195
137270
+
Val
TAC
[ENA]
¡û
>W1810487086
QAYI01000002
Betaproteobacteria
Massilia sp. GV016 [QAYI]
137438
137513
+
Val
TAC
[ENA]
¡û
>W1810659412
QJKB01000001
Betaproteobacteria
Undibacterium pigrum DSM 19792 [QJKB]
169755
169830
+
Val
TAC
[ENA]
¡û
>W1810672568
QJTN01000001
Betaproteobacteria
Massilia sp. GV024 [QJTN]
1029372
1029297
-
Val
TAC
[ENA]
¡û
>W1810672571
QJTN01000002
Betaproteobacteria
Massilia sp. GV024 [QJTN]
137195
137270
+
Val
TAC
[ENA]
¡û
>W1810672573
QJTN01000002
Betaproteobacteria
Massilia sp. GV024 [QJTN]
137438
137513
+
Val
TAC
[ENA]
¡û
>C151087601
CP011930
Betaproteobacteria
Herbaspirillum seropedicae Z67 [CP011930]
2939903
2939828
-
Val
TAC
[Ensembl]
¡û
>C151092624
CP012201
Betaproteobacteria
Massilia sp. NR 4-1 [CP012201]
4798293
4798218
-
Val
TAC
-
¡û
>C151092654
CP012201
Betaproteobacteria
Massilia sp. NR 4-1 [CP012201]
1675245
1675170
-
Val
TAC
-
¡û
>C10107834
CP002039
Betaproteobacteria
Herbaspirillum seropedicae SmR1 [CP002039]
2940284
2940209
-
Val
TAC
[Ensembl]
¡û
>C161060474
CP013737
Betaproteobacteria
Herbaspirillum rubrisubalbicans M1 [CP013737]
3088491
3088416
-
Val
TAC
[Ensembl]
¡û
>W1610071858
BCUJ01000024
Betaproteobacteria
Herbaspirillum rubrisubalbicans NBRC 102523 [BCUJ]
11511
11586
+
Val
TAC
[ENA]
¡û
>W121068711
AJVC01000003
Betaproteobacteria
Herbaspirillum sp. GW103 [AJVC]
1425066
1424991
-
Val
TAC
[ENA]
¡û
>W1610722868
LMCY01000005
Betaproteobacteria
Massilia sp. Root335 [LMCY]
97131
97056
-
Val
TAC
[ENA]
¡û
>W1610723387
LMDJ01000003
Betaproteobacteria
Massilia sp. Root351 [LMDJ]
105477
105552
+
Val
TAC
[ENA]
¡û
>W1610723389
LMDJ01000003
Betaproteobacteria
Massilia sp. Root351 [LMDJ]
105720
105795
+
Val
TAC
[ENA]
¡û
>W1610723418
LMDJ01000023
Betaproteobacteria
Massilia sp. Root351 [LMDJ]
553180
553105
-
Val
TAC
[ENA]
¡û
>W1610724367
LMEC01000001
Betaproteobacteria
Massilia sp. Root418 [LMEC]
324772
324847
+
Val
TAC
[ENA]
¡û
>W1610724411
LMEC01000022
Betaproteobacteria
Massilia sp. Root418 [LMEC]
38784
38859
+
Val
TAC
[ENA]
¡û
>W1610724413
LMEC01000022
Betaproteobacteria
Massilia sp. Root418 [LMEC]
39024
39099
+
Val
TAC
[ENA]
¡û
>W1710067802
BCTG01000013
Betaproteobacteria
Herbaspirillum chlorophenolicum NBRC 102525 [BCTG]
83104
83179
+
Val
TAC
[ENA]
¡û
>W1710069060
BCUJ01000024
Betaproteobacteria
Herbaspirillum rubrisubalbicans NBRC 102523 [BCUJ]
11511
11586
+
Val
TAC
[ENA]
¡û
>W1710585987
FQWU01000001
Betaproteobacteria
Massilia sp. CF038 [FQWU]
2222675
2222600
-
Val
TAC
[ENA]
¡û
>W1710586022
FQWU01000006
Betaproteobacteria
Massilia sp. CF038 [FQWU]
80049
79974
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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