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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.284217 (19 seq.)
>C171057585
CP017125
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae M1601 [CP017125]
519494
519569
+
Lys
TTT
-
¡û
>C171088925
CP019061
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae zly1309F [CP019061]
519347
519422
+
Lys
TTT
-
¡û
>W141450940
JFAE01000010
Mycoplasmatota
Mycoplasma mycoides subsp. capri PG3 [JFAE]
24970
25045
+
Lys
TTT
[ENA]
¡û
>W141450948
JFAE01000022
Mycoplasmatota
Mycoplasma mycoides subsp. capri PG3 [JFAE]
103117
103042
-
Lys
TTT
[ENA]
¡û
>C191224174
LS483503
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483503]
608194
608119
-
Lys
TTT
-
¡û
>C191224177
LS483503
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483503]
92881
92806
-
Lys
TTT
-
¡û
>C191224203
LS483504
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483504]
617333
617258
-
Lys
TTT
-
¡û
>C191224206
LS483504
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483504]
97425
97350
-
Lys
TTT
-
¡û
>C191224293
LS483507
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483507]
612190
612115
-
Lys
TTT
-
¡û
>C191224296
LS483507
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483507]
97425
97350
-
Lys
TTT
-
¡û
>W141700873
JMJI01000025
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae 99108 [JMJI]
1640
1565
-
Lys
TTT
[ENA]
¡û
>W1910598087
LAUU01000002
Mycoplasmatota
Mycoplasma leachii 6049 [LAUU]
323
248
-
Lys
TTT
[ENA]
¡û
>SRA1014776
SRR023845.309857
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
12
87
+
Lys
TTT
[SRA]
>C151015550
CP006959
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae 87001 [CP006959]
519535
519610
+
Lys
TTT
[Ensembl]
¡û
>C151064932
CP010267
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides izsam_mm5713 [CP010267]
651968
651893
-
Lys
TTT
[Ensembl]
¡û
>C151102617
LM995445
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae 9231-Aboms [LM995445]
519381
519456
+
Lys
TTT
[Ensembl]
¡û
>C151102888
LN515398
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae type strain: F38 [LN515398]
519323
519398
+
Lys
TTT
[Ensembl]
¡û
>C151102917
LN515399
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae ILRI181 [LN515399]
519484
519559
+
Lys
TTT
[Ensembl]
¡û
>W11141012
AENG01000001
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae M1601 [AENG]
519494
519569
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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