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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.284279 (23 seq.)
>W1711136061
LUZT01000005
Chlorobiota
Chlorobiales bacterium Clorobi_01 [LUZT]
376878
376805
-
Lys
TTT
[ENA]
¡û
>C171049445
CP016432
Chlorobiota
Prosthecochloris sp. CIB 2401 [CP016432]
446976
447049
+
Lys
TTT
-
¡û
>C171060555
CP017305
Chlorobiota
Chlorobaculum limnaeum DSM 1677 [CP017305]
275252
275325
+
Lys
TTT
-
¡û
>C171113994
CP020873
Chlorobiota
Prosthecochloris sp. HL-130-GSB [CP020873]
387533
387608
+
Lys
TTT
-
¡û
>C007009
AE006470
Chlorobiota
Chlorobaculum tepidum TLS [AE006470]
275856
275928
+
Lys
TTT
[Ensembl]
¡û
>w007178
AAIJ01000034
Chlorobiota
Prosthecochloris aestuarii DSM 271 [AAIJ]
7836
7759
-
Lys
TTT
[ENA]
¡û
>w006962
AAIC01000030
Chlorobiota
Chlorobium phaeobacteroides BS1 [AAIC]
8075
7998
-
Lys
TTT
[ENA]
¡û
>WENV181232301
OFEN01000004
[OFEN] coral metagenome; NA
39635
39708
+
Lys
TTT
[ENA]
¢þ
>WENV181232315
OFEN01000024
[OFEN] coral metagenome; NA
10268
10195
-
Lys
TTT
[ENA]
¢þ
>WENV181233207
OFES01000003
[OFES] coral metagenome; NA
74767
74840
+
Lys
TTT
[ENA]
¢þ
>WENV181233226
OFES01000012
[OFES] coral metagenome; NA
85753
85826
+
Lys
TTT
[ENA]
¢þ
>WENV181303848
OFHR01000006
[OFHR] coral metagenome; NA
52800
52727
-
Lys
TTT
[ENA]
¢þ
>C08003634
CP001101
Chlorobiota
Chlorobium phaeobacteroides [CP001101]
450178
450253
+
Lys
TTT
[Ensembl]
¡û
>C08003610
CP001099
Chlorobiota
Chlorobaculum parvum NCIB 8327 [CP001099]
1941768
1941695
-
Lys
TTT
[Ensembl]
¡û
>C08007153
CP001108
Chlorobiota
Prosthecochloris aestuarii DSM 271 [CP001108]
426204
426279
+
Lys
TTT
[Ensembl]
¡û
>WENV183512881
OMKS01001668
[OMKS] sediment metagenome; hot spring sediment
2578
2505
-
Lys
TTT
[ENA]
¢þ
>WENV170620038
FUWD013024777
[FUWD] metagenome; unknown
3667
3740
+
Lys
TTT
[ENA]
¢þ
>WENV170628169
FUWD013242742
[FUWD] metagenome; unknown
3667
3740
+
Lys
TTT
[ENA]
¢þ
>C181068770
CP022571
Chlorobiota
Prosthecochloris sp. GSB1 TY Vent [CP022571]
459974
460047
+
Lys
TTT
-
¡û
>W1810062182
PDNX01000007
Chlorobiota
Prosthecochloris sp. ZM [PDNX]
2521958
2521885
-
Lys
TTT
[ENA]
¡û
>W1810062218
PDNY01000003
Chlorobiota
Prosthecochloris sp. ZM_2 [PDNY]
118111
118184
+
Lys
TTT
[ENA]
¡û
>W1810062265
PDNZ01000003
Chlorobiota
Prosthecochloris marina V1 [PDNZ]
86025
85952
-
Lys
TTT
[ENA]
¡û
>W1610947181
LUZT01000005
Chlorobiota
Chlorobiales bacterium Clorobi_01 [LUZT]
376878
376805
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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