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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.284291 (72 seq.)
>W1710896259
LNHI01000048
Gammaproteobacteria
Klebsiella pneumoniae [LNHI]
135
210
+
Thr
GGT
[ENA]
¡û
>W1710914983
LNTY01000058
Gammaproteobacteria
Enterovibrio coralii [LNTY]
181
256
+
Thr
GGT
[ENA]
¡û
>W1711318806
MAYS01000571
Gammaproteobacteria
Candidatus Erwinia dacicola [MAYS]
4692
4767
+
Thr
GGT
[ENA]
¡û
>W1711361077
MDKE01000027
Gammaproteobacteria
Oceanisphaera psychrotolerans [MDKE]
31762
31837
+
Thr
GGT
[ENA]
¡û
>C171118282
CP021376
Gammaproteobacteria
Oceanisphaera avium AMac2203 [CP021376]
2210401
2210326
-
Thr
GGT
-
¡û
>C171118292
CP021376
Gammaproteobacteria
Oceanisphaera avium AMac2203 [CP021376]
1956834
1956759
-
Thr
GGT
-
¡û
>C171118340
CP021377
Gammaproteobacteria
Oceanisphaera profunda SM1222 [CP021377]
1757009
1757084
+
Thr
GGT
-
¡û
>C171118395
CP021377
Gammaproteobacteria
Oceanisphaera profunda SM1222 [CP021377]
1387189
1387114
-
Thr
GGT
-
¡û
>W131058517
ANFM02000040
Gammaproteobacteria
Grimontia indica AK16 [ANFM]
38554
38479
-
Thr
GGT
[ENA]
¡û
>W131058537
ANFM02000074
Gammaproteobacteria
Grimontia indica AK16 [ANFM]
6333
6408
+
Thr
GGT
[ENA]
¡û
>W131229036
AUGL01000038
Gammaproteobacteria
Ferrimonas futtsuensis DSM 18154 [AUGL]
4476
4551
+
Thr
GGT
[ENA]
¡û
>W131180087
ARMW01000022
Gammaproteobacteria
Oceanimonas smirnovii ATCC BAA-899 [ARMW]
361
436
+
Thr
GGT
[ENA]
¡û
>WENV181960245
OGZN01030775
[OGZN] human gut metagenome; faeces
171
96
-
Thr
GGT
[ENA]
¢þ
>WENV182864240
OKQB01000803
[OKQB] human gut metagenome; human gut
1231
1306
+
Thr
GGT
[ENA]
¢þ
>WENV170112166
CEGD01005565
[CEGD] microbial mat metagenome; grass silage
205
130
-
Thr
GGT
[ENA]
¢þ
>C181169215
CP028897
Gammaproteobacteria
Dongshaea marina DM2 [CP028897]
50330
50405
+
Thr
GGT
-
¡û
>C181169217
CP028897
Gammaproteobacteria
Dongshaea marina DM2 [CP028897]
59968
60043
+
Thr
GGT
-
¡û
>C181169227
CP028897
Gammaproteobacteria
Dongshaea marina DM2 [CP028897]
280568
280643
+
Thr
GGT
-
¡û
>W141562280
JHZA01000030
Gammaproteobacteria
Enterovibrio calviensis DSM 14347 [JHZA]
280
205
-
Thr
GGT
[ENA]
¡û
>W1910679079
MCVB01000028
Gammaproteobacteria
Enterovibrio norvegicus 10N.286.48.F3 [MCVB]
6159
6234
+
Thr
GGT
[ENA]
¡û
>W1910679123
MCVB01000168
Gammaproteobacteria
Enterovibrio norvegicus 10N.286.48.F3 [MCVB]
191
266
+
Thr
GGT
[ENA]
¡û
>W1910680199
MCVQ01000002
Gammaproteobacteria
Enterovibrio norvegicus 10N.286.46.C4 [MCVQ]
641
566
-
Thr
GGT
[ENA]
¡û
>W1910680236
MCVQ01000060
Gammaproteobacteria
Enterovibrio norvegicus 10N.286.46.C4 [MCVQ]
221
296
+
Thr
GGT
[ENA]
¡û
>W1910680273
MCVR01000008
Gammaproteobacteria
Enterovibrio norvegicus 10N.286.46.C3 [MCVR]
6350
6425
+
Thr
GGT
[ENA]
¡û
>W1910680292
MCVR01000076
Gammaproteobacteria
Enterovibrio norvegicus 10N.286.46.C3 [MCVR]
69191
69116
-
Thr
GGT
[ENA]
¡û
>W1910685813
MCYQ01000011
Gammaproteobacteria
Enterovibrio norvegicus 10N.261.49.F5 [MCYQ]
776
701
-
Thr
GGT
[ENA]
¡û
>W1910685830
MCYQ01000025
Gammaproteobacteria
Enterovibrio norvegicus 10N.261.49.F5 [MCYQ]
167
242
+
Thr
GGT
[ENA]
¡û
>W1910688649
MDAD01000061
Gammaproteobacteria
Enterovibrio norvegicus 10N.261.45.C6 [MDAD]
4023
4098
+
Thr
GGT
[ENA]
¡û
>W1910688684
MDAD01000097
Gammaproteobacteria
Enterovibrio norvegicus 10N.261.45.C6 [MDAD]
6220
6295
+
Thr
GGT
[ENA]
¡û
>W1910688891
MDAG01000027
Gammaproteobacteria
Enterovibrio norvegicus 10N.261.45.B2 [MDAG]
181431
181356
-
Thr
GGT
[ENA]
¡û
>W1910688899
MDAG01000032
Gammaproteobacteria
Enterovibrio norvegicus 10N.261.45.B2 [MDAG]
6213
6288
+
Thr
GGT
[ENA]
¡û
>W1910689262
MDAL01000016
Gammaproteobacteria
Enterovibrio norvegicus 10N.261.45.A10 [MDAL]
291282
291207
-
Thr
GGT
[ENA]
¡û
>W1910689275
MDAL01000023
Gammaproteobacteria
Enterovibrio norvegicus 10N.261.45.A10 [MDAL]
6188
6263
+
Thr
GGT
[ENA]
¡û
>W1910784560
MPZM01000017
Gammaproteobacteria
Oceanisphaera arctica V1-41 [MPZM]
35044
34969
-
Thr
GGT
[ENA]
¡û
>W1910784573
MPZM01000025
Gammaproteobacteria
Oceanisphaera arctica V1-41 [MPZM]
42301
42226
-
Thr
GGT
[ENA]
¡û
>W1911174161
NQJF01000007
Gammaproteobacteria
Oceanimonas baumannii ATCC 700832 [NQJF]
295
370
+
Thr
GGT
[ENA]
¡û
>W1810153871
PIYP01000030
Gammaproteobacteria
Enterovibrio nigricans CAIM 661 [PIYP]
300
375
+
Thr
GGT
[ENA]
¡û
>W1810390140
PXYG01000004
Gammaproteobacteria
Zobellella endophytica 59N8 [PXYG]
230
305
+
Thr
GGT
[ENA]
¡û
>W1810390166
PXYG01000010
Gammaproteobacteria
Zobellella endophytica 59N8 [PXYG]
43089
43164
+
Thr
GGT
[ENA]
¡û
>W1810533080
QCZE01000002
Gammaproteobacteria
Zobellella maritima 102-Py4 [QCZE]
136
211
+
Thr
GGT
[ENA]
¡û
>W1810533101
QCZE01000007
Gammaproteobacteria
Zobellella maritima 102-Py4 [QCZE]
68975
68900
-
Thr
GGT
[ENA]
¡û
>W1810634557
QIUE01000003
Gammaproteobacteria
Klebsiella pneumoniae SCPM-O-B-8394 [QIUE]
440
515
+
Thr
GGT
[ENA]
¡û
>W1810701360
QMED01000010
Gammaproteobacteria
Algibacillus agarilyticus RQJ05 [QMED]
1266
1191
-
Thr
GGT
[ENA]
¡û
>C11109034
CP002209
Gammaproteobacteria
Ferrimonas balearica DSM 9799 [CP002209]
273648
273723
+
Thr
GGT
[Ensembl]
¡û
>C11109037
CP002209
Gammaproteobacteria
Ferrimonas balearica DSM 9799 [CP002209]
337501
337576
+
Thr
GGT
[Ensembl]
¡û
>C11109080
CP002209
Gammaproteobacteria
Ferrimonas balearica DSM 9799 [CP002209]
4250684
4250609
-
Thr
GGT
[Ensembl]
¡û
>W1511582481
LASY01000013
Gammaproteobacteria
Grimontia sp. AD028 [LASY]
87
162
+
Thr
GGT
[ENA]
¡û
>W1511582506
LASY01000046
Gammaproteobacteria
Grimontia sp. AD028 [LASY]
207
132
-
Thr
GGT
[ENA]
¡û
>W1610041967
BAXG01000077
Gammaproteobacteria
Photobacterium sp. JCM 19050 [BAXG]
50
125
+
Thr
GGT
[ENA]
¡û
>W121070193
AJWM01000117
Gammaproteobacteria
Catenovulum agarivorans YM01 [AJWM]
201
126
-
Thr
GGT
[ENA]
¡û
>W1610070364
BCTE01000052
Gammaproteobacteria
Ferrimonas marina NBRC 102583 [BCTE]
4335
4410
+
Thr
GGT
[ENA]
¡û
>W121070243
AJWN01000075
Gammaproteobacteria
Enterovibrio norvegicus FF-454 [AJWN]
158
233
+
Thr
GGT
[ENA]
¡û
>W121070245
AJWN01000076
Gammaproteobacteria
Enterovibrio norvegicus FF-454 [AJWN]
176483
176408
-
Thr
GGT
[ENA]
¡û
>W121070260
AJWN01000103
Gammaproteobacteria
Enterovibrio norvegicus FF-454 [AJWN]
2
77
+
Thr
GGT
[ENA]
¡û
>W121071653
AJYD01000042
Gammaproteobacteria
Enterovibrio norvegicus FF-33 [AJYD]
206
281
+
Thr
GGT
[ENA]
¡û
>W121071702
AJYD01000095
Gammaproteobacteria
Enterovibrio norvegicus FF-33 [AJYD]
176404
176329
-
Thr
GGT
[ENA]
¡û
>W121071742
AJYE01000365
Gammaproteobacteria
Enterovibrio norvegicus FF-162 [AJYE]
144
219
+
Thr
GGT
[ENA]
¡û
>W1610419995
FIZY01000022
Gammaproteobacteria
Grimontia marina [FIZY]
75441
75366
-
Thr
GGT
[ENA]
¡û
>W1610571931
JYZJ01000027
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Infantis [JYZJ]
212
287
+
Thr
GGT
[ENA]
¡û
>W1610756663
LNHI01000048
Gammaproteobacteria
Klebsiella pneumoniae [LNHI]
135
210
+
Thr
GGT
[ENA]
¡û
>W1610773287
LNTY01000058
Gammaproteobacteria
Enterovibrio coralii [LNTY]
181
256
+
Thr
GGT
[ENA]
¡û
>W1710039061
BAXG01000077
Gammaproteobacteria
Photobacterium sp. JCM 19050 [BAXG]
50
125
+
Thr
GGT
[ENA]
¡û
>W1710067737
BCTE01000052
Gammaproteobacteria
Ferrimonas marina NBRC 102583 [BCTE]
4335
4410
+
Thr
GGT
[ENA]
¡û
>W1710419644
FIZX01000003
Gammaproteobacteria
Grimontia celer 96-237 [FIZX]
528
603
+
Thr
GGT
[ENA]
¡û
>W1710419686
FIZX01000014
Gammaproteobacteria
Grimontia celer 96-237 [FIZX]
440
365
-
Thr
GGT
[ENA]
¡û
>W1710419731
FIZY01000022
Gammaproteobacteria
Grimontia marina [FIZY]
75441
75366
-
Thr
GGT
[ENA]
¡û
>W1710519123
FNEM01000037
Gammaproteobacteria
Ferrimonas sediminum [FNEM]
4451
4526
+
Thr
GGT
[ENA]
¡û
>W1710572466
FOWR01000078
Gammaproteobacteria
Enterovibrio norvegicus DSM 15893 [FOWR]
6424
6499
+
Thr
GGT
[ENA]
¡û
>W1710572468
FOWR01000091
Gammaproteobacteria
Enterovibrio norvegicus DSM 15893 [FOWR]
1445
1370
-
Thr
GGT
[ENA]
¡û
>W1710586564
FQXG01000015
Gammaproteobacteria
Ferrimonas marina [FQXG]
4587
4662
+
Thr
GGT
[ENA]
¡û
>W1710601857
FUXU01000002
Gammaproteobacteria
Enterovibrio nigricans DSM 22720 [FUXU]
399
474
+
Thr
GGT
[ENA]
¡û
>W1710682596
JYZJ01000027
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Infantis [JYZJ]
212
287
+
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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