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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.284330 (53 seq.)
>W1711334217
MBQD01000026
Actinomycetota
Tessaracoccus lapidicaptus [MBQD]
76240
76165
-
Lys
TTT
[ENA]
¡û
>C171091490
CP019229
Actinomycetota
Tessaracoccus sp. T2.5-30 [CP019229]
2523194
2523269
+
Lys
TTT
-
¡û
>C171096188
CP019605
Actinomycetota
Tessaracoccus flavus RP1 [CP019605]
564504
564577
+
Lys
TTT
-
¡û
>C171096231
CP019606
Actinomycetota
Tessaracoccus aquimaris NSG39 [CP019606]
240508
240581
+
Lys
TTT
-
¡û
>C171096317
CP019607
Actinomycetota
Tessaracoccus flavescens SST-39T [CP019607]
792227
792154
-
Lys
TTT
-
¡û
>WENV180732012
ODGW01069433
[ODGW] human metagenome; G_DNA_Supragingival plaque
179
252
+
Lys
TTT
[ENA]
¢þ
>WENV180751790
ODHS01165839
[ODHS] human metagenome; G_DNA_Supragingival plaque
121
48
-
Lys
TTT
[ENA]
¢þ
>WENV180778522
ODIM01013102
[ODIM] human metagenome; G_DNA_Supragingival plaque
920
847
-
Lys
TTT
[ENA]
¢þ
>WENV180788499
ODIS01069155
[ODIS] human metagenome; G_DNA_Supragingival plaque
74
1
-
Lys
TTT
[ENA]
¢þ
>WENV180814747
ODJO01044838
[ODJO] human metagenome; G_DNA_Supragingival plaque
691
764
+
Lys
TTT
[ENA]
¢þ
>WENV180823148
ODJW01006209
[ODJW] human metagenome; G_DNA_Supragingival plaque
2131
2058
-
Lys
TTT
[ENA]
¢þ
>WENV180824610
ODJX01019271
[ODJX] human metagenome; G_DNA_Supragingival plaque
664
591
-
Lys
TTT
[ENA]
¢þ
>WENV180834263
ODKD01008462
[ODKD] human metagenome; G_DNA_Supragingival plaque
1146
1219
+
Lys
TTT
[ENA]
¢þ
>WENV180835859
ODKE01016815
[ODKE] human metagenome; G_DNA_Supragingival plaque
532
605
+
Lys
TTT
[ENA]
¢þ
>WENV180843916
ODKN01017855
[ODKN] human metagenome; G_DNA_Supragingival plaque
1148
1075
-
Lys
TTT
[ENA]
¢þ
>WENV180859319
ODLD01000329
[ODLD] human metagenome; G_DNA_Supragingival plaque
16865
16792
-
Lys
TTT
[ENA]
¢þ
>WENV180881690
ODMA01041048
[ODMA] human metagenome; G_DNA_Supragingival plaque
92
19
-
Lys
TTT
[ENA]
¢þ
>WENV180922385
ODTJ01003356
[ODTJ] human metagenome; G_DNA_Supragingival plaque
3079
3006
-
Lys
TTT
[ENA]
¢þ
>WENV180924544
ODTK01007037
[ODTK] human metagenome; G_DNA_Supragingival plaque
941
1014
+
Lys
TTT
[ENA]
¢þ
>WENV180938571
ODTX01003514
[ODTX] human metagenome; G_DNA_Supragingival plaque
1312
1239
-
Lys
TTT
[ENA]
¢þ
>WENV180944295
ODUC01012656
[ODUC] human metagenome; G_DNA_Supragingival plaque
2706
2633
-
Lys
TTT
[ENA]
¢þ
>WENV180973373
ODUW01004198
[ODUW] human metagenome; G_DNA_Supragingival plaque
2718
2645
-
Lys
TTT
[ENA]
¢þ
>WENV180973384
ODUW01004526
[ODUW] human metagenome; G_DNA_Supragingival plaque
4656
4583
-
Lys
TTT
[ENA]
¢þ
>WENV180980412
ODVE01000123
[ODVE] human metagenome; G_DNA_Supragingival plaque
10422
10349
-
Lys
TTT
[ENA]
¢þ
>WENV180982526
ODVF01000056
[ODVF] human metagenome; G_DNA_Supragingival plaque
27272
27345
+
Lys
TTT
[ENA]
¢þ
>WENV180999913
ODVT01104491
[ODVT] human metagenome; G_DNA_Buccal mucosa
287
360
+
Lys
TTT
[ENA]
¢þ
>WENV181002376
ODVX01000248
[ODVX] human metagenome; G_DNA_Supragingival plaque
18131
18058
-
Lys
TTT
[ENA]
¢þ
>WENV181009449
ODWE01072780
[ODWE] human metagenome; G_DNA_Supragingival plaque
297
224
-
Lys
TTT
[ENA]
¢þ
>WENV181012830
ODWK01037799
[ODWK] human metagenome; G_DNA_Supragingival plaque
196
123
-
Lys
TTT
[ENA]
¢þ
>WENV181029978
ODXF01015034
[ODXF] human metagenome; G_DNA_Supragingival plaque
905
832
-
Lys
TTT
[ENA]
¢þ
>WENV181049483
ODYD01000325
[ODYD] human metagenome; G_DNA_Supragingival plaque
23102
23029
-
Lys
TTT
[ENA]
¢þ
>WENV181063391
ODYP01000639
[ODYP] human metagenome; G_DNA_Supragingival plaque
13230
13303
+
Lys
TTT
[ENA]
¢þ
>WENV181070371
OEAE01001084
[OEAE] human metagenome; G_DNA_Supragingival plaque
8013
7940
-
Lys
TTT
[ENA]
¢þ
>WENV181077546
OEAP01069785
[OEAP] human metagenome; G_DNA_Supragingival plaque
529
456
-
Lys
TTT
[ENA]
¢þ
>WENV181122139
OEFL01093740
[OEFL] human metagenome; G_DNA_Supragingival plaque
161
234
+
Lys
TTT
[ENA]
¢þ
>WENV181146439
OEHQ01005634
[OEHQ] human metagenome; G_DNA_Supragingival plaque
3062
2989
-
Lys
TTT
[ENA]
¢þ
>WENV181153010
OEIA01014367
[OEIA] human metagenome; G_DNA_Supragingival plaque
798
871
+
Lys
TTT
[ENA]
¢þ
>WENV181156674
OEIE01051375
[OEIE] human metagenome; G_DNA_Supragingival plaque
455
528
+
Lys
TTT
[ENA]
¢þ
>WENV181181661
OEJV01000045
[OEJV] human metagenome; G_DNA_Supragingival plaque
51291
51364
+
Lys
TTT
[ENA]
¢þ
>WENV183508665
OMHE01010735
[OMHE] human oral metagenome; human oral
285
358
+
Lys
TTT
[ENA]
¢þ
>WENV170684850
LFRM01061241
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
3532
3607
+
Lys
TTT
[ENA]
¢þ
>C191173861
CP040007
Actinomycetota
Arachnia propionica F0700 [CP040007]
901692
901619
-
Lys
TTT
-
¡û
>C191210876
LR134406
Actinomycetota
Arachnia propionica NCTC12967 [LR134406]
887057
886984
-
Lys
TTT
-
¡û
>C191214591
LR134535
Actinomycetota
Arachnia propionica NCTC11666 [LR134535]
893225
893152
-
Lys
TTT
-
¡û
>W141557440
JHVD01000011
Actinomycetota
Propionibacteriaceae bacterium P6A17 [JHVD]
71610
71685
+
Lys
TTT
[ENA]
¡û
>W1510061392
CCYJ01000013
Actinomycetota
Tessaracoccus massiliensis SIT6 [CCYJ]
42404
42329
-
Lys
TTT
[ENA]
¡û
>C121002968
CP002734
Actinomycetota
Arachnia propionica F0230a [CP002734]
902781
902706
-
Lys
TTT
[Ensembl]
¡û
>W1610074491
BCWS01000004
Actinomycetota
Arachnia propionica NBRC 14587 [BCWS]
225270
225345
+
Lys
TTT
[ENA]
¡û
>W1611066184
MBQD01000026
Actinomycetota
Tessaracoccus lapidicaptus [MBQD]
76240
76165
-
Lys
TTT
[ENA]
¡û
>W1710071609
BCWS01000004
Actinomycetota
Arachnia propionica NBRC 14587 [BCWS]
225270
225345
+
Lys
TTT
[ENA]
¡û
>W1710521715
FNGP01000003
Actinomycetota
Tessaracoccus oleiagri [FNGP]
112085
112010
-
Lys
TTT
[ENA]
¡û
>W1710531756
FNPU01000001
Actinomycetota
Tessaracoccus flavus [FNPU]
102097
102170
+
Lys
TTT
[ENA]
¡û
>W1710588343
FQZG01000055
Actinomycetota
Tessaracoccus bendigoensis DSM 12906 [FQZG]
6504
6579
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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