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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.284334 (87 seq.)
>W1710877122
LMPV01000004
Bacillota
Exiguobacterium sp. Leaf196 [LMPV]
352
427
+
Thr
TGT
[ENA]
¡û
>W1710877131
LMPV01000005
Bacillota
Exiguobacterium sp. Leaf196 [LMPV]
445
520
+
Thr
TGT
[ENA]
¡û
>W1710877148
LMPV01000011
Bacillota
Exiguobacterium sp. Leaf196 [LMPV]
101298
101225
-
Thr
TGT
[ENA]
¡û
>W1710909393
LNQL01000003
Bacillota
Exiguobacterium enclense [LNQL]
517
590
+
Thr
TGT
[ENA]
¡û
>W1711116962
LUCU01000004
Bacillota
Exiguobacterium sp. KKBO11 [LUCU]
377
452
+
Thr
TGT
[ENA]
¡û
>W1711116971
LUCU01000005
Bacillota
Exiguobacterium sp. KKBO11 [LUCU]
751
676
-
Thr
TGT
[ENA]
¡û
>W1711117004
LUCU01000033
Bacillota
Exiguobacterium sp. KKBO11 [LUCU]
513
586
+
Thr
TGT
[ENA]
¡û
>W1711166825
LVVL01000017
Bacillota
Exiguobacterium undae [LVVL]
236
309
+
Thr
TGT
[ENA]
¡û
>W131241579
BARY01000016
Bacillota
Exiguobacterium sp. OS-77 [BARY]
40502
40429
-
Thr
TGT
[ENA]
¡û
>W1711603274
MOLV01000032
Bacillota
Exiguobacterium sp. KRL4 [MOLV]
376
449
+
Thr
TGT
[ENA]
¡û
>W1711603280
MOLV01000034
Bacillota
Exiguobacterium sp. KRL4 [MOLV]
536
461
-
Thr
TGT
[ENA]
¡û
>W1711603306
MOLV01000046
Bacillota
Exiguobacterium sp. KRL4 [MOLV]
970
895
-
Thr
TGT
[ENA]
¡û
>W1711632673
MPSZ01000014
Bacillota
Exiguobacterium indicum HHS 31 [MPSZ]
34883
34810
-
Thr
TGT
[ENA]
¡û
>W1711632683
MPSZ01000023
Bacillota
Exiguobacterium indicum HHS 31 [MPSZ]
729
654
-
Thr
TGT
[ENA]
¡û
>W1712017315
NESR01000023
Bacillota
Kurthia gibsonii [NESR]
201
274
+
Thr
TGT
[ENA]
¡û
>W1712017332
NESR01000042
Bacillota
Kurthia gibsonii [NESR]
794
719
-
Thr
TGT
[ENA]
¡û
>W1712017341
NESR01000043
Bacillota
Kurthia gibsonii [NESR]
650
575
-
Thr
TGT
[ENA]
¡û
>PL171001641
CP022237
Firmicutes
Exiguobacterium oxidotolerans N4-1P plasmid:unnamed1
128395
128470
+
Thr
TGT
[ENA]
¡û
>C171040519
CP015731
Bacillota
Exiguobacterium sp. U13-1 [CP015731]
461894
461969
+
Thr
TGT
-
¡û
>C171040532
CP015731
Bacillota
Exiguobacterium sp. U13-1 [CP015731]
514242
514317
+
Thr
TGT
-
¡û
>C171040541
CP015731
Bacillota
Exiguobacterium sp. U13-1 [CP015731]
579232
579305
+
Thr
TGT
-
¡û
>C171072094
CP018057
Bacillota
Exiguobacterium sp. ZWU0009 [CP018057]
34760
34835
+
Thr
TGT
-
¡û
>C171072107
CP018057
Bacillota
Exiguobacterium sp. ZWU0009 [CP018057]
87108
87183
+
Thr
TGT
-
¡û
>C171072113
CP018057
Bacillota
Exiguobacterium sp. ZWU0009 [CP018057]
92710
92785
+
Thr
TGT
-
¡û
>C171072122
CP018057
Bacillota
Exiguobacterium sp. ZWU0009 [CP018057]
157698
157771
+
Thr
TGT
-
¡û
>w003686
AADW02000030
Bacillota
Exiguobacterium sibiricum 255-15 [AADW]
19988
19911
-
Thr
TGT
[ENA]
¡û
>w003662
AADW02000015
Bacillota
Exiguobacterium sibiricum 255-15 [AADW]
1817
1894
+
Thr
TGT
[ENA]
¡û
>w003655
AADW02000013
Bacillota
Exiguobacterium sibiricum 255-15 [AADW]
57814
57737
-
Thr
TGT
[ENA]
¡û
>C08004773
CP001022
Bacillota
Exiguobacterium sibiricum 255-15 [CP001022]
34850
34925
+
Thr
TGT
[Ensembl]
¡û
>C08004786
CP001022
Bacillota
Exiguobacterium sibiricum 255-15 [CP001022]
87433
87508
+
Thr
TGT
[Ensembl]
¡û
>C08004795
CP001022
Bacillota
Exiguobacterium sibiricum 255-15 [CP001022]
152400
152473
+
Thr
TGT
[Ensembl]
¡û
>WENV170022531
BCQK01018547
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
293
366
+
Thr
TGT
[ENA]
¢þ
>WENV170022760
BCQK01046195
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
522
447
-
Thr
TGT
[ENA]
¢þ
>W141484769
JFYW01000005
Bacillota
Exiguobacterium sp. RIT341 [JFYW]
3
78
+
Thr
TGT
[ENA]
¡û
>W141484787
JFYW01000009
Bacillota
Exiguobacterium sp. RIT341 [JFYW]
283552
283479
-
Thr
TGT
[ENA]
¡û
>W141563082
JHZS01000003
Bacillota
Exiguobacterium sibiricum 7·î3Æü [JHZS]
327436
327363
-
Thr
TGT
[ENA]
¡û
>W141563156
JHZU01000002
Bacillota
Exiguobacterium undae 190-11 [JHZU]
823
748
-
Thr
TGT
[ENA]
¡û
>W141563189
JHZU01000006
Bacillota
Exiguobacterium undae 190-11 [JHZU]
1583379
1583306
-
Thr
TGT
[ENA]
¡û
>W141563217
JHZV01000002
Bacillota
Exiguobacterium undae DSM 14481 [JHZV]
834
759
-
Thr
TGT
[ENA]
¡û
>W141563261
JHZV01000006
Bacillota
Exiguobacterium undae DSM 14481 [JHZV]
584878
584805
-
Thr
TGT
[ENA]
¡û
>W141699908
JMIR01000004
Bacillota
Tumebacillus flagellatus [JMIR]
152597
152672
+
Thr
TGT
[ENA]
¡û
>W141701493
JMKS01000003
Bacillota
Exiguobacterium antarcticum DSM 14480 [JMKS]
1439558
1439633
+
Thr
TGT
[ENA]
¡û
>W141701506
JMKS01000003
Bacillota
Exiguobacterium antarcticum DSM 14480 [JMKS]
1492184
1492259
+
Thr
TGT
[ENA]
¡û
>W141701515
JMKS01000003
Bacillota
Exiguobacterium antarcticum DSM 14480 [JMKS]
1558267
1558340
+
Thr
TGT
[ENA]
¡û
>W141730932
JNIR01000001
Bacillota
Exiguobacterium acetylicum DSM 20416 [JNIR]
2754361
2754436
+
Thr
TGT
[ENA]
¡û
>W141730945
JNIR01000001
Bacillota
Exiguobacterium acetylicum DSM 20416 [JNIR]
2806768
2806843
+
Thr
TGT
[ENA]
¡û
>W141730954
JNIR01000001
Bacillota
Exiguobacterium acetylicum DSM 20416 [JNIR]
2871724
2871797
+
Thr
TGT
[ENA]
¡û
>W141730982
JNIS01000001
Bacillota
Exiguobacterium oxidotolerans JCM 12280 [JNIS]
1600485
1600560
+
Thr
TGT
[ENA]
¡û
>W141730995
JNIS01000001
Bacillota
Exiguobacterium oxidotolerans JCM 12280 [JNIS]
1652978
1653053
+
Thr
TGT
[ENA]
¡û
>W141731004
JNIS01000001
Bacillota
Exiguobacterium oxidotolerans JCM 12280 [JNIS]
1717977
1718050
+
Thr
TGT
[ENA]
¡û
>C141009918
CP006866
Bacillota
Exiguobacterium sp. MH3 [CP006866]
51581
51656
+
Thr
TGT
[Ensembl]
¡û
>C141009925
CP006866
Bacillota
Exiguobacterium sp. MH3 [CP006866]
118993
119066
+
Thr
TGT
[Ensembl]
¡û
>C141009955
CP006866
Bacillota
Exiguobacterium sp. MH3 [CP006866]
3164024
3164099
+
Thr
TGT
[Ensembl]
¡û
>W1911770686
QXJB01000006
Bacillota
Exiguobacterium sp. RIT452 [QXJB]
164287
164214
-
Thr
TGT
[ENA]
¡û
>W1911770701
QXJB01000021
Bacillota
Exiguobacterium sp. RIT452 [QXJB]
734
659
-
Thr
TGT
[ENA]
¡û
>W1911770710
QXJB01000022
Bacillota
Exiguobacterium sp. RIT452 [QXJB]
102
177
+
Thr
TGT
[ENA]
¡û
>W1810760549
QPKF01000005
Bacillota
Exiguobacterium sp. RIT594 [QPKF]
138699
138626
-
Thr
TGT
[ENA]
¡û
>W1810760564
QPKF01000017
Bacillota
Exiguobacterium sp. RIT594 [QPKF]
314
389
+
Thr
TGT
[ENA]
¡û
>W1810760571
QPKF01000021
Bacillota
Exiguobacterium sp. RIT594 [QPKF]
98
173
+
Thr
TGT
[ENA]
¡û
>W1511403818
JTLL01000036
Bacillota
Exiguobacterium sp. ZWU0009 [JTLL]
168
243
+
Thr
TGT
[ENA]
¡û
>W1511403833
JTLL01000043
Bacillota
Exiguobacterium sp. ZWU0009 [JTLL]
750
675
-
Thr
TGT
[ENA]
¡û
>W1511686062
LFQN01000002
Bacillota
Exiguobacterium acetylicum ZBG2 [LFQN]
196
269
+
Thr
TGT
[ENA]
¡û
>W1511686108
LFQN01000049
Bacillota
Exiguobacterium acetylicum ZBG2 [LFQN]
542
467
-
Thr
TGT
[ENA]
¡û
>W1511686117
LFQN01000053
Bacillota
Exiguobacterium acetylicum ZBG2 [LFQN]
269
344
+
Thr
TGT
[ENA]
¡û
>W1511699968
LGIW01000010
Bacillota
Exiguobacterium sp. BMC-KP [LGIW]
208
283
+
Thr
TGT
[ENA]
¡û
>C131001790
CP003063
Bacillota
Exiguobacterium antarcticum B7 Eab7 [CP003063]
34759
34834
+
Thr
TGT
[Ensembl]
¡û
>C131001802
CP003063
Bacillota
Exiguobacterium antarcticum B7 Eab7 [CP003063]
87367
87442
+
Thr
TGT
[Ensembl]
¡û
>C131001811
CP003063
Bacillota
Exiguobacterium antarcticum B7 Eab7 [CP003063]
152343
152416
+
Thr
TGT
[Ensembl]
¡û
>W1610589600
LDQV01000015
Bacillota
Exiguobacterium indicum [LDQV]
318
391
+
Thr
TGT
[ENA]
¡û
>W1610589642
LDQV01000053
Bacillota
Exiguobacterium indicum [LDQV]
748
673
-
Thr
TGT
[ENA]
¡û
>W1610589678
LDQW01000025
Bacillota
Exiguobacterium indicum [LDQW]
48250
48177
-
Thr
TGT
[ENA]
¡û
>W1610589701
LDQW01000085
Bacillota
Exiguobacterium indicum [LDQW]
269
344
+
Thr
TGT
[ENA]
¡û
>W1610589710
LDQW01000108
Bacillota
Exiguobacterium indicum [LDQW]
540
465
-
Thr
TGT
[ENA]
¡û
>W1610739468
LMPV01000004
Bacillota
Exiguobacterium sp. Leaf196 [LMPV]
352
427
+
Thr
TGT
[ENA]
¡û
>W1610739477
LMPV01000005
Bacillota
Exiguobacterium sp. Leaf196 [LMPV]
445
520
+
Thr
TGT
[ENA]
¡û
>W1610739494
LMPV01000011
Bacillota
Exiguobacterium sp. Leaf196 [LMPV]
101298
101225
-
Thr
TGT
[ENA]
¡û
>W1610767752
LNQL01000003
Bacillota
Exiguobacterium enclense [LNQL]
517
590
+
Thr
TGT
[ENA]
¡û
>W1610928321
LUCU01000004
Bacillota
Exiguobacterium sp. KKBO11 [LUCU]
377
452
+
Thr
TGT
[ENA]
¡û
>W1610928330
LUCU01000005
Bacillota
Exiguobacterium sp. KKBO11 [LUCU]
751
676
-
Thr
TGT
[ENA]
¡û
>W1610928363
LUCU01000033
Bacillota
Exiguobacterium sp. KKBO11 [LUCU]
513
586
+
Thr
TGT
[ENA]
¡û
>W1610977365
LVVL01000017
Bacillota
Exiguobacterium undae [LVVL]
236
309
+
Thr
TGT
[ENA]
¡û
>W1710511228
FMYN01000003
Bacillota
Exiguobacterium enclense [FMYN]
517
590
+
Thr
TGT
[ENA]
¡û
>W1710708880
LDQV01000015
Bacillota
Exiguobacterium indicum [LDQV]
318
391
+
Thr
TGT
[ENA]
¡û
>W1710708922
LDQV01000053
Bacillota
Exiguobacterium indicum [LDQV]
748
673
-
Thr
TGT
[ENA]
¡û
>W1710708958
LDQW01000025
Bacillota
Exiguobacterium indicum [LDQW]
48250
48177
-
Thr
TGT
[ENA]
¡û
>W1710708981
LDQW01000085
Bacillota
Exiguobacterium indicum [LDQW]
269
344
+
Thr
TGT
[ENA]
¡û
>W1710708990
LDQW01000108
Bacillota
Exiguobacterium indicum [LDQW]
540
465
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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