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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.284377 (76 seq.)
>W1711006517
LQOK01000047
Actinomycetota
Mycobacterium bohemicum [LQOK]
257657
257732
+
His
GTG
[ENA]
¡û
>W1711007774
LQPK01000042
Actinomycetota
Mycobacterium paraense [LQPK]
143026
142951
-
His
GTG
[ENA]
¡û
>W1711007836
LQPM01000006
Actinomycetota
Mycobacterium paraense [LQPM]
140373
140298
-
His
GTG
[ENA]
¡û
>W1711081651
LSSV01000093
Actinomycetota
Dietzia sp. 111N12-1 [LSSV]
109712
109787
+
His
GTG
[ENA]
¡û
>W1711082328
LSTT01000386
Actinomycetota
Dietzia cinnamea [LSTT]
95647
95572
-
His
GTG
[ENA]
¡û
>W131159258
AQUX01000001
Actinomycetota
Corynebacterium doosanense DSM 45436 [AQUX]
65969
65892
-
His
GTG
[ENA]
¡û
>W1711186777
LWOM01000055
Actinomycetota
Corynebacterium sp. HMSC05C01 [LWOM]
16298
16373
+
His
GTG
[ENA]
¡û
>W1711276057
LZHV01000041
Actinomycetota
Mycobacterium sp. ACS4054 [LZHV]
291851
291926
+
His
GTG
[ENA]
¡û
>W1711277400
LZIX01000012
Actinomycetota
Mycobacterium sp. E735 [LZIX]
2101
2176
+
His
GTG
[ENA]
¡û
>W1711277458
LZIY01000063
Actinomycetota
Mycobacterium sp. E188 [LZIY]
33593
33668
+
His
GTG
[ENA]
¡û
>W1711277522
LZIZ01000157
Actinomycetota
Mycobacterium sp. E3339 [LZIZ]
5506
5581
+
His
GTG
[ENA]
¡û
>W1711277580
LZJA01000288
Actinomycetota
Mycobacterium sp. E3305 [LZJA]
80993
80918
-
His
GTG
[ENA]
¡û
>W1711277926
LZJI01000073
Actinomycetota
Mycobacterium sp. E1747 [LZJI]
33533
33608
+
His
GTG
[ENA]
¡û
>W1711277973
LZJJ01000136
Actinomycetota
Mycobacterium sp. E1715 [LZJJ]
4855
4780
-
His
GTG
[ENA]
¡û
>W1711278631
LZJX01000063
Actinomycetota
Mycobacterium sp. E2989 [LZJX]
85431
85356
-
His
GTG
[ENA]
¡û
>W1711278667
LZJY01000124
Actinomycetota
Mycobacterium scrofulaceum [LZJY]
4647
4722
+
His
GTG
[ENA]
¡û
>W1711345561
MCNW01000008
Actinomycetota
Corynebacterium pseudotuberculosis [MCNW]
1039003
1039078
+
His
GTG
[ENA]
¡û
>W1711351211
MDCG01000022
Actinomycetota
Dietzia alimentaria [MDCG]
9956
9881
-
His
GTG
[ENA]
¡û
>W1711436134
MIOM01000030
Actinomycetota
Corynebacterium diphtheriae [MIOM]
39968
39893
-
His
GTG
[ENA]
¡û
>W1711436202
MION01000047
Actinomycetota
Corynebacterium diphtheriae [MION]
39875
39800
-
His
GTG
[ENA]
¡û
>W1711436229
MIOO01000011
Actinomycetota
Corynebacterium diphtheriae [MIOO]
25596
25521
-
His
GTG
[ENA]
¡û
>W1711436349
MIOQ01000093
Actinomycetota
Corynebacterium diphtheriae [MIOQ]
26053
25978
-
His
GTG
[ENA]
¡û
>W1711510239
MLAL01000007
Actinomycetota
Corynebacterium sp. NML130628 [MLAL]
48441
48366
-
His
GTG
[ENA]
¡û
>W1711687102
MSBT01000022
Actinomycetota
Corynebacterium diphtheriae [MSBT]
4321
4396
+
His
GTG
[ENA]
¡û
>C171002109
CP009249
Actinomycetota
Corynebacterium phocae M408/89/1 [CP009249]
689952
689877
-
His
GTG
-
¡û
>C171112655
CP020821
Actinomycetota
Mycobacterium colombiense CECT 3035 [CP020821]
2516797
2516872
+
His
GTG
-
¡û
>W131156426
AQPS01000045
Actinomycetota
Corynebacterium glutamicum MT [AQPS]
335011
335086
+
His
GTG
[ENA]
¡û
>W131221681
AUAQ01000020
Actinomycetota
Corynebacterium freiburgense DSM 45254 [AUAQ]
581
506
-
His
GTG
[ENA]
¡û
>C005806
AP009044
Actinomycetota
Corynebacterium glutamicum R [AP009044]
2598018
2598093
+
His
GTG
[Ensembl]
¡û
>WENV180726240
ODGS01076371
[ODGS] human metagenome; G_DNA_Attached/Keratinized gingiva
174
100
-
His
GTG
[ENA]
¢þ
>WENV180738433
ODHD01000026
[ODHD] human metagenome; G_DNA_Supragingival plaque
125721
125646
-
His
GTG
[ENA]
¢þ
>WENV180738718
ODHD01000374
[ODHD] human metagenome; G_DNA_Supragingival plaque
21572
21646
+
His
GTG
[ENA]
¢þ
>WENV180972994
ODUW01000746
[ODUW] human metagenome; G_DNA_Supragingival plaque
710
636
-
His
GTG
[ENA]
¢þ
>WENV180973547
ODUW01007949
[ODUW] human metagenome; G_DNA_Supragingival plaque
1183
1108
-
His
GTG
[ENA]
¢þ
>WENV181106565
OEEI01000001
[OEEI] human metagenome; G_DNA_Supragingival plaque
134579
134505
-
His
GTG
[ENA]
¢þ
>WENV181106945
OEEI01000886
[OEEI] human metagenome; G_DNA_Supragingival plaque
504
579
+
His
GTG
[ENA]
¢þ
>WENV181155916
OEIE01000696
[OEIE] human metagenome; G_DNA_Supragingival plaque
259
185
-
His
GTG
[ENA]
¢þ
>WENV181381988
OFRF01045115
[OFRF] wastewater metagenome; Exp Tend CN 50WW
228
302
+
His
GTG
[ENA]
¢þ
>WENV170552643
CXWK01000897
[CXWK] wastewater metagenome; activated sludge
222771
222846
+
His
GTG
[ENA]
¢þ
>WENV170975812
MTKZ01002503
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
84791
84866
+
His
GTG
[ENA]
¢þ
>C181148336
CP027238
Actinomycetota
Dietzia sp. oral taxon 368 W5195 [CP027238]
2399749
2399675
-
His
GTG
-
¡û
>W141564560
JIAW01000007
Actinomycetota
Mycobacterium sp. URHB0044 [JIAW]
166570
166645
+
His
GTG
[ENA]
¡û
>W141690496
JLXW01000010
Actinomycetota
Mycobacterium colombiense TKK-01-0051 [JLXW]
1064544
1064619
+
His
GTG
[ENA]
¡û
>W141733467
JNKV01000040
Actinomycetota
Corynebacterium vitaeruminis Ga6A13 [JNKV]
1375
1300
-
His
GTG
[ENA]
¡û
>W141800907
JPDH01000107
Actinomycetota
Corynebacterium glutamicum crenatum [JPDH]
3385
3310
-
His
GTG
[ENA]
¡û
>W1910182634
BJNB01000015
Actinomycetota
Corynebacterium flavescens NBRC 14136 [BJNB]
9170
9095
-
His
GTG
[ENA]
¡û
>W1910369806
FUEH01000071
Actinomycetota
Mycobacterium colombiense CSURP297 [FUEH]
2066
2141
+
His
GTG
[ENA]
¡û
>C141002611
CP003924
Actinomycetota
Corynebacterium maris DSM 45190 [CP003924]
2285007
2285082
+
His
GTG
[Ensembl]
¡û
>C09102743
CP001601
Actinomycetota
Corynebacterium aurimucosum ATCC 700975 DSM 44827; ATCC 700975 [CP001601]
2241173
2241248
+
His
GTG
[Ensembl]
¡û
>W1911422528
NXEI01000001
Actinomycetota
Dietzia sp. WMMA184 [NXEI]
1193624
1193698
+
His
GTG
[ENA]
¡û
>W1810580850
QETM01000002
Actinomycetota
Dietzia maris AMT [QETM]
78151
78225
+
His
GTG
[ENA]
¡û
>W1810722005
QNTT01000015
Actinomycetota
Dietzia maris SST1 [QNTT]
36621
36547
-
His
GTG
[ENA]
¡û
>W10116367
ADNS01000009
Actinomycetota
Corynebacterium ammoniagenes DSM 20306 [ADNS]
58712
58637
-
His
GTG
[ENA]
¡û
>W1510544501
CSTD01000001
Actinomycetota
Mycobacterium bohemicum DSM 44277 [CSTD]
1989154
1989079
-
His
GTG
[ENA]
¡û
>W11121036
ADNS01000009
Actinomycetota
Corynebacterium ammoniagenes DSM 20306 [ADNS]
58712
58637
-
His
GTG
[ENA]
¡û
>W1511439788
JUOH01000058
Actinomycetota
Corynebacterium aurimucosum 911_CAUR [JUOH]
80744
80819
+
His
GTG
[ENA]
¡û
>W1511448413
JUZU01000014
Actinomycetota
Corynebacterium aurimucosum 620_CAUR [JUZU]
80744
80819
+
His
GTG
[ENA]
¡û
>W11139507
AEKG01000048
Actinomycetota
Dietzia cinnamea P4 [AEKG]
34128
34203
+
His
GTG
[ENA]
¡û
>W11174934
AFVW01000001
Actinomycetota
Mycobacterium colombiense CECT 3035 [AFVW]
765608
765683
+
His
GTG
[ENA]
¡û
>W11178763
AGFF01000008
Actinomycetota
Dietzia alimentaria 72 [AGFF]
10073
9998
-
His
GTG
[ENA]
¡û
>C121005347
CP003082
Actinomycetota
Corynebacterium pseudotuberculosis 1/06-A [CP003082]
1742347
1742422
+
His
GTG
[Ensembl]
¡û
>C121008747
CP003216
Actinomycetota
Corynebacterium diphtheriae PW8 [CP003216]
1904918
1904993
+
His
GTG
[Ensembl]
¡û
>W121010610
AGJJ01000001
Actinomycetota
Mycolicibacterium tusciae JS617 [AGJJ]
541538
541612
+
His
GTG
[ENA]
¡û
>W1610576786
LATC01000092
Actinomycetota
Mycobacterium sp. UM_11 [LATC]
14258
14183
-
His
GTG
[ENA]
¡û
>W1610920486
LSSV01000093
Actinomycetota
Dietzia sp. 111N12-1 [LSSV]
109712
109787
+
His
GTG
[ENA]
¡û
>W1610921113
LSTT01000386
Actinomycetota
Dietzia cinnamea [LSTT]
95647
95572
-
His
GTG
[ENA]
¡û
>W1611035342
LZHV01000041
Actinomycetota
Mycobacterium sp. ACS4054 [LZHV]
291851
291926
+
His
GTG
[ENA]
¡û
>W1611036685
LZIX01000012
Actinomycetota
Mycobacterium sp. E735 [LZIX]
2101
2176
+
His
GTG
[ENA]
¡û
>W1611036743
LZIY01000063
Actinomycetota
Mycobacterium sp. E188 [LZIY]
33593
33668
+
His
GTG
[ENA]
¡û
>W1611036807
LZIZ01000157
Actinomycetota
Mycobacterium sp. E3339 [LZIZ]
5506
5581
+
His
GTG
[ENA]
¡û
>W1611036865
LZJA01000288
Actinomycetota
Mycobacterium sp. E3305 [LZJA]
80993
80918
-
His
GTG
[ENA]
¡û
>W1611037211
LZJI01000073
Actinomycetota
Mycobacterium sp. E1747 [LZJI]
33533
33608
+
His
GTG
[ENA]
¡û
>W1611037258
LZJJ01000136
Actinomycetota
Mycobacterium sp. E1715 [LZJJ]
4855
4780
-
His
GTG
[ENA]
¡û
>W1611037916
LZJX01000063
Actinomycetota
Mycobacterium sp. E2989 [LZJX]
85431
85356
-
His
GTG
[ENA]
¡û
>W1611037952
LZJY01000124
Actinomycetota
Mycobacterium scrofulaceum [LZJY]
4647
4722
+
His
GTG
[ENA]
¡û
>W1710695275
LATC01000092
Actinomycetota
Mycobacterium sp. UM_11 [LATC]
14258
14183
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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