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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.284391 (107 seq.)
>W1710989178
LPVR01000005
Bacillota
Streptococcus equinus [LPVR]
736975
736901
-
His
GTG
[ENA]
¡û
>W1711006309
LQOF01000465
Bacillota
Streptococcus gallolyticus [LQOF]
1616
1542
-
His
GTG
[ENA]
¡û
>W1711006420
LQOI01000151
Bacillota
Streptococcus lutetiensis [LQOI]
344
270
-
His
GTG
[ENA]
¡û
>W1711019330
LQXV01000147
Bacillota
Streptococcus gallolyticus [LQXV]
159
233
+
His
GTG
[ENA]
¡û
>W1711207047
LXFC01000012
Bacillota
Streptococcus gallolyticus subsp. gallolyticus [LXFC]
298
372
+
His
GTG
[ENA]
¡û
>W131217621
ATWZ01000003
Bacillota
Streptococcus equinus SN033 [ATWZ]
984
910
-
His
GTG
[ENA]
¡û
>W1711305598
MAMV01000015
Bacillota
Streptococcus gallolyticus subsp. gallolyticus [MAMV]
889
963
+
His
GTG
[ENA]
¡û
>W131232319
AUJD01000012
Bacillota
Streptococcus equinus B315 [AUJD]
274
348
+
His
GTG
[ENA]
¡û
>C171084848
CP018822
Bacillota
Streptococcus gallolyticus subsp. gallolyticus DSM 16831 [CP018822]
79539
79613
+
His
GTG
-
¡û
>WENV180116750
OAQX01001687
[OAQX] human gut metagenome; ENVO:feces
583
657
+
His
GTG
[ENA]
¢þ
>WENV180117347
OARK01000326
[OARK] human gut metagenome; ENVO:feces
10471
10545
+
His
GTG
[ENA]
¢þ
>WENV180119249
OASD01026017
[OASD] human gut metagenome; ENVO:feces
98
172
+
His
GTG
[ENA]
¢þ
>WENV180198967
OBAD01055269
[OBAD] human gut metagenome; ENVO:feces
118
192
+
His
GTG
[ENA]
¢þ
>WENV180401632
OBRM01001494
[OBRM] human gut metagenome; ENVO:feces
422
348
-
His
GTG
[ENA]
¢þ
>WENV180404116
OBRU01001287
[OBRU] human gut metagenome; ENVO:feces
750
676
-
His
GTG
[ENA]
¢þ
>WENV180404227
OBRV01003079
[OBRV] human gut metagenome; ENVO:feces
350
424
+
His
GTG
[ENA]
¢þ
>WENV180408555
OBUS01005354
[OBUS] human gut metagenome; faeces
226
300
+
His
GTG
[ENA]
¢þ
>WENV180418965
OBVL01004121
[OBVL] human gut metagenome; faeces
226
300
+
His
GTG
[ENA]
¢þ
>WENV180482107
OBZG01000081
[OBZG] human gut metagenome; faeces
167
241
+
His
GTG
[ENA]
¢þ
>WENV180558449
OCJY01066231
[OCJY] human gut metagenome; human gut
102
28
-
His
GTG
[ENA]
¢þ
>WENV180597289
OCPK01033622
[OCPK] human gut metagenome; ENVO:feces
175
101
-
His
GTG
[ENA]
¢þ
>W141071838
ASKA01000042
Bacillota
Streptococcus sp. HSISB1 [ASKA]
9102
9028
-
His
GTG
[ENA]
¡û
>W141091727
AUZG01000003
Bacillota
Streptococcus equinus ATCC 33317 [AUZG]
820
746
-
His
GTG
[ENA]
¡û
>W141091786
AUZH01000042
Bacillota
Streptococcus equinus JB1 [AUZH]
9490
9416
-
His
GTG
[ENA]
¡û
>WENV181527451
OGHK01001857
[OGHK] metagenome; Human gut stool
16146
16220
+
His
GTG
[ENA]
¢þ
>WENV181564116
OGJH01001648
[OGJH] metagenome; Human gut stool
138
64
-
His
GTG
[ENA]
¢þ
>WENV181567966
OGJK01000188
[OGJK] metagenome; Human gut stool
43227
43153
-
His
GTG
[ENA]
¢þ
>WENV181579746
OGJZ01000888
[OGJZ] metagenome; Human gut stool
4218
4144
-
His
GTG
[ENA]
¢þ
>W141204914
AZJT01000084
Bacillota
Streptococcus thermophilus M17PTZA496 [AZJT]
299
373
+
His
GTG
[ENA]
¡û
>WENV182275198
OHUN01000017
[OHUN] human gut metagenome; feces
156884
156958
+
His
GTG
[ENA]
¢þ
>WENV182409978
OIFJ01013118
[OIFJ] human gut metagenome; stool
419
345
-
His
GTG
[ENA]
¢þ
>WENV182437510
OIJJ01005704
[OIJJ] human gut metagenome; human gut
1025
1099
+
His
GTG
[ENA]
¢þ
>WENV182442060
OIKE01024143
[OIKE] human gut metagenome; human gut
378
304
-
His
GTG
[ENA]
¢þ
>WENV182442620
OIKG01004855
[OIKG] human gut metagenome; human gut
742
668
-
His
GTG
[ENA]
¢þ
>WENV182473972
OIPU01005722
[OIPU] human gut metagenome; human gut
1109
1183
+
His
GTG
[ENA]
¢þ
>WENV182474805
OIPW01027823
[OIPW] human gut metagenome; human gut
241
167
-
His
GTG
[ENA]
¢þ
>WENV182475142
OIPY01007350
[OIPY] human gut metagenome; human gut
293
367
+
His
GTG
[ENA]
¢þ
>WENV182495711
OITB01009880
[OITB] human gut metagenome; human gut
446
372
-
His
GTG
[ENA]
¢þ
>WENV182496624
OITG01009887
[OITG] human gut metagenome; human gut
147
221
+
His
GTG
[ENA]
¢þ
>WENV182498990
OITR01002226
[OITR] human gut metagenome; human gut
434
360
-
His
GTG
[ENA]
¢þ
>W141261906
CCBC010000216
Bacillota
Streptococcus gallolyticus [CCBC]
2451
2525
+
His
GTG
[ENA]
¡û
>WENV182959120
OKWI01005131
[OKWI] human gut metagenome; stool
162
236
+
His
GTG
[ENA]
¢þ
>WENV182961922
OKWL01006348
[OKWL] human gut metagenome; stool
419
345
-
His
GTG
[ENA]
¢þ
>WENV182962597
OKWN01008466
[OKWN] human gut metagenome; stool
248
322
+
His
GTG
[ENA]
¢þ
>WENV182997292
OLBP01000714
[OLBP] human gut metagenome; human gut
4793
4867
+
His
GTG
[ENA]
¢þ
>WENV183003747
OLCT01007882
[OLCT] human gut metagenome; human gut
531
457
-
His
GTG
[ENA]
¢þ
>C181207745
LS483348
Bacillota
Streptococcus lutetiensis NCTC8738 [LS483348]
84258
84332
+
His
GTG
-
¡û
>C181211208
LS483403
Bacillota
Streptococcus lutetiensis NCTC13774 [LS483403]
83154
83228
+
His
GTG
-
¡û
>C181211595
LS483409
Bacillota
Streptococcus gallolyticus NCTC13773 [LS483409]
79628
79702
+
His
GTG
-
¡û
>C191199822
LR134203
Bacillota
Streptococcus lutetiensis NCTC11436 [LR134203]
681479
681553
+
His
GTG
-
¡û
>C191203854
LR134282
Bacillota
Streptococcus equinus NCTC8140 [LR134282]
80676
80750
+
His
GTG
-
¡û
>C191204454
LR134292
Bacillota
Streptococcus equinus NCTC10389 [LR134292]
2299
2373
+
His
GTG
-
¡û
>C191222960
LR594042
Bacillota
Streptococcus equinus NCTC8133 [LR594042]
74847
74921
+
His
GTG
-
¡û
>C191223092
LR594044
Bacillota
Streptococcus lutetiensis NCTC8796 [LR594044]
1694248
1694174
-
His
GTG
-
¡û
>W141733190
JNKQ01000009
Bacillota
Streptococcus equinus 2B [JNKQ]
1078
1004
-
His
GTG
[ENA]
¡û
>W141803103
JPGC01000001
Bacillota
Streptococcus equinus [JPGC]
1168
1242
+
His
GTG
[ENA]
¡û
>W1910181512
BJMB01000025
Bacillota
Streptococcus equinus NBRC 12057 [BJMB]
777
703
-
His
GTG
[ENA]
¡û
>C141001301
CP003025
Bacillota
Streptococcus lutetiensis 033 [CP003025]
277358
277432
+
His
GTG
[Ensembl]
¡û
>W1910550577
FZRA01000016
Bacillota
Streptococcus equinus AR3 [FZRA]
271
345
+
His
GTG
[ENA]
¡û
>W1910889514
NETH01000067
Bacillota
Streptococcus gallolyticus BI02 [NETH]
1365
1439
+
His
GTG
[ENA]
¡û
>W1810823964
QSHE01000051
Bacillota
Streptococcus lutetiensis AM38-16 [QSHE]
454
380
-
His
GTG
[ENA]
¡û
>W1810829809
QSLI01000001
Bacillota
Streptococcus lutetiensis AM25-7 [QSLI]
222378
222304
-
His
GTG
[ENA]
¡û
>W10127579
AEEM01000003
Bacillota
Streptococcus gallolyticus subsp. gallolyticus TX20005 [AEEM]
178
252
+
His
GTG
[ENA]
¡û
>C10111562
FN597254
Bacillota
Streptococcus gallolyticus UCN34 [FN597254]
85138
85212
+
His
GTG
[Ensembl]
¡û
>W1511228314
JNLO01000001
Bacillota
Streptococcus equinus AG46 [JNLO]
1452513
1452439
-
His
GTG
[ENA]
¡û
>C11120575
AP012053
Bacillota
Streptococcus gallolyticus subsp. gallolyticus ATCC 43143 [AP012053]
83402
83476
+
His
GTG
[Ensembl]
¡û
>W11135067
AEEM01000003
Bacillota
Streptococcus gallolyticus subsp. gallolyticus TX20005 [AEEM]
178
252
+
His
GTG
[ENA]
¡û
>W1511530600
JYKU01000002
Bacillota
Streptococcus gallolyticus subsp. gallolyticus NTS 31106099 [JYKU]
1538
1612
+
His
GTG
[ENA]
¡û
>W11149909
AEVB01000044
Bacillota
Streptococcus equinus ATCC 9812 [AEVB]
709
783
+
His
GTG
[ENA]
¡û
>W11179166
AGGC01000208
Bacillota
Streptococcus sobrinus TCI-13 [AGGC]
81
155
+
His
GTG
[ENA]
¡û
>W11179215
AGGE01000256
Bacillota
Streptococcus sobrinus TCI-28 [AGGE]
1336
1262
-
His
GTG
[ENA]
¡û
>W11179271
AGGG01000255
Bacillota
Streptococcus sobrinus TCI-53 [AGGG]
81
155
+
His
GTG
[ENA]
¡û
>W11179379
AGGK01000077
Bacillota
Streptococcus sobrinus TCI-77 [AGGK]
180
254
+
His
GTG
[ENA]
¡û
>W11180119
AGHJ01000303
Bacillota
Streptococcus sobrinus TCI-392 [AGHJ]
180
254
+
His
GTG
[ENA]
¡û
>W11180224
AGHN01000146
Bacillota
Streptococcus sobrinus TCI-118 [AGHN]
81
155
+
His
GTG
[ENA]
¡û
>C121010327
CP003295
Bacillota
Streptococcus infantarius subsp. infantarius CJ18 [CP003295]
262291
262365
+
His
GTG
[Ensembl]
¡û
>C121017465
FR824043
Bacillota
Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069 [FR824043]
89012
89086
+
His
GTG
[Ensembl]
¡û
>C161059371
CP013689
Bacillota
Streptococcus infantarius ICDDRB-NRC-S5 [CP013689]
66796
66870
+
His
GTG
[Ensembl]
¡û
>W1610844054
LPVR01000005
Bacillota
Streptococcus equinus [LPVR]
736975
736901
-
His
GTG
[ENA]
¡û
>W1610856959
LQOF01000465
Bacillota
Streptococcus gallolyticus [LQOF]
1616
1542
-
His
GTG
[ENA]
¡û
>W1610857070
LQOI01000151
Bacillota
Streptococcus lutetiensis [LQOI]
344
270
-
His
GTG
[ENA]
¡û
>W1610867618
LQXV01000147
Bacillota
Streptococcus gallolyticus [LQXV]
159
233
+
His
GTG
[ENA]
¡û
>W1610995077
LXFC01000012
Bacillota
Streptococcus gallolyticus subsp. gallolyticus [LXFC]
298
372
+
His
GTG
[ENA]
¡û
>W1710504927
FMTH01000011
Bacillota
Streptococcus equinus [FMTH]
861
787
-
His
GTG
[ENA]
¡û
>W1710519258
FNEP01000022
Bacillota
Streptococcus equinus [FNEP]
274
348
+
His
GTG
[ENA]
¡û
>W1710520151
FNFJ01000004
Bacillota
Streptococcus gallolyticus [FNFJ]
450
524
+
His
GTG
[ENA]
¡û
>W1710521623
FNGN01000004
Bacillota
Streptococcus gallolyticus [FNGN]
450
524
+
His
GTG
[ENA]
¡û
>W1710522066
FNGX01000015
Bacillota
Streptococcus equinus [FNGX]
274
348
+
His
GTG
[ENA]
¡û
>W1710525288
FNJK01000017
Bacillota
Streptococcus equinus [FNJK]
266
340
+
His
GTG
[ENA]
¡û
>W1710525977
FNJX01000004
Bacillota
Streptococcus equinus [FNJX]
6149
6075
-
His
GTG
[ENA]
¡û
>W1710526184
FNKC01000008
Bacillota
Streptococcus equinus [FNKC]
1011
937
-
His
GTG
[ENA]
¡û
>W1710528079
FNMW01000013
Bacillota
Streptococcus equinus [FNMW]
793
719
-
His
GTG
[ENA]
¡û
>W1710538102
FNUH01000004
Bacillota
Streptococcus gallolyticus [FNUH]
234723
234649
-
His
GTG
[ENA]
¡û
>W1710541041
FNXZ01000009
Bacillota
Streptococcus sp. 45 [FNXZ]
23779
23705
-
His
GTG
[ENA]
¡û
>W1710542000
FNYU01000018
Bacillota
Streptococcus equinus [FNYU]
274
348
+
His
GTG
[ENA]
¡û
>W1710543172
FNZS01000011
Bacillota
Streptococcus equinus [FNZS]
274
348
+
His
GTG
[ENA]
¡û
>W1710543342
FNZW01000011
Bacillota
Streptococcus equinus [FNZW]
811
737
-
His
GTG
[ENA]
¡û
>W1710545462
FOBM01000022
Bacillota
Streptococcus gallolyticus [FOBM]
450
524
+
His
GTG
[ENA]
¡û
>W1710548127
FODM01000010
Bacillota
Streptococcus equinus [FODM]
274
348
+
His
GTG
[ENA]
¡û
>W1710550000
FOEX01000027
Bacillota
Streptococcus equinus [FOEX]
793
719
-
His
GTG
[ENA]
¡û
>W1710550892
FOFQ01000023
Bacillota
Streptococcus equinus [FOFQ]
274
348
+
His
GTG
[ENA]
¡û
>W1710558579
FOLZ01000011
Bacillota
Streptococcus gallolyticus [FOLZ]
24736
24662
-
His
GTG
[ENA]
¡û
>W1710562050
FOOP01000014
Bacillota
Streptococcus equinus [FOOP]
271
345
+
His
GTG
[ENA]
¡û
>W1710568060
FOTG01000017
Bacillota
Streptococcus equinus JB1 [FOTG]
443
517
+
His
GTG
[ENA]
¡û
>W1710574241
FOYC01000011
Bacillota
Streptococcus equinus [FOYC]
1600
1526
-
His
GTG
[ENA]
¡û
>W1710575255
FOZA01000001
Bacillota
Streptococcus equinus [FOZA]
399611
399537
-
His
GTG
[ENA]
¡û
>W1710578371
FPBN01000014
Bacillota
Streptococcus gallolyticus [FPBN]
24718
24644
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK