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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.284494 (77 seq.)
>W1710885913
LMXN01000013
Bacteroidota
Algoriphagus resistens NH1 [LMXN]
93879
93806
-
Gly
TCC
[ENA]
¡û
>W1710889319
LNAL01000008
Bacteroidota
Solirubrum puertoriconensis MC1A [LNAL]
811671
811744
+
Gly
TCC
[ENA]
¡û
>W131180774
ARNJ01000065
Bacteroidota
Hymenobacter aerophilus DSM 13606 [ARNJ]
112543
112470
-
Gly
TCC
[ENA]
¡û
>W1711377557
MDZA01000222
Bacteroidota
Hymenobacter coccineus CCM 8649 [MDZA]
53807
53880
+
Gly
TCC
[ENA]
¡û
>W131053371
AMZY02000010
Bacteroidota
Mariniradius saccharolyticus AK6 [AMZY]
312071
311996
-
Gly
TCC
[ENA]
¡û
>W131167772
ARDN01000011
Bacteroidota
Echinicola pacifica DSM 19836 [ARDN]
130741
130816
+
Gly
TCC
[ENA]
¡û
>W131179051
ARMB01000059
Bacteroidota
Rhodonellum psychrophilum DSM 17998 [ARMB]
397953
398028
+
Gly
TCC
[ENA]
¡û
>W131215959
ATVL01000006
Bacteroidota
Hymenobacter norwichensis DSM 15439 [ATVL]
460648
460721
+
Gly
TCC
[ENA]
¡û
>W131223126
AUBV01000003
Bacteroidota
Algoriphagus mannitolivorans DSM 15301 [AUBV]
327079
327152
+
Gly
TCC
[ENA]
¡û
>W131223163
AUBW01000004
Bacteroidota
Algoriphagus terrigena DSM 22685 [AUBW]
92937
92864
-
Gly
TCC
[ENA]
¡û
>W1711704541
MSPQ01000001
Bacteroidota
Algoriphagus marinus am2 [MSPQ]
911871
911944
+
Gly
TCC
[ENA]
¡û
>W1711707936
MSSW01000071
Bacteroidota
Algoriphagus antarcticus [MSSW]
15358
15285
-
Gly
TCC
[ENA]
¡û
>W1711707952
MSSX01000004
Bacteroidota
Algoriphagus faecimaris [MSSX]
68568
68493
-
Gly
TCC
[ENA]
¡û
>W1711767883
MVBC01000009
Bacteroidota
Hymenobacter sp. CRA2 [MVBC]
215162
215089
-
Gly
TCC
[ENA]
¡û
>w023322
AAXU01000003
Bacteroidota
Algoriphagus machipongonensis PR1 [AAXU]
466578
466501
-
Gly
TCC
[ENA]
¡û
>WENV180014806
FQKF010156149
[FQKF] soil metagenome; Soil
464
536
+
Gly
TCC
[ENA]
¢þ
>WENV180035855
FTLB01026025
[FTLB] metagenome; soil
158
231
+
Gly
TCC
[ENA]
¢þ
>WENV180298591
OBJA01458509
[OBJA] soil metagenome; sediment, water from around vicinity
128
55
-
Gly
TCC
[ENA]
¢þ
>WENV181233824
OFET01000126
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
60550
60623
+
Gly
TCC
[ENA]
¢þ
>W141148142
AWXR01000001
Bacteroidota
Rhodonellum psychrophilum GCM71 = DSM 17998 [AWXR]
125425
125500
+
Gly
TCC
[ENA]
¡û
>WENV183704786
PDWI01000634
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
46428
46501
+
Gly
TCC
[ENA]
¢þ
>WENV183705510
PDWI01001693
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
8412
8485
+
Gly
TCC
[ENA]
¢þ
>WENV183705888
PDWI01002521
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
13162
13089
-
Gly
TCC
[ENA]
¢þ
>WENV183706116
PDWI01003125
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
13335
13262
-
Gly
TCC
[ENA]
¢þ
>WENV183717561
PDWJ01001125
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
8412
8485
+
Gly
TCC
[ENA]
¢þ
>WENV183718004
PDWJ01002156
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
11298
11225
-
Gly
TCC
[ENA]
¢þ
>WENV170192611
CEPF01034446
[CEPF] marine metagenome genome assembly TARA_039_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
302
227
-
Gly
TCC
[ENA]
¢þ
>WENV170193892
CEPI01064000
[CEPI] marine metagenome genome assembly TARA_041_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
124
49
-
Gly
TCC
[ENA]
¢þ
>WENV170612902
FUWD012737381
[FUWD] metagenome; unknown
77
2
-
Gly
TCC
[ENA]
¢þ
>WENV170641791
JFJP01037605
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
10920
10995
+
Gly
TCC
[ENA]
¢þ
>WENV170984132
MWVV01176792
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
84
11
-
Gly
TCC
[ENA]
¢þ
>WENV170998642
MWWJ01067556
[MWWJ] soil metagenome; CN-4 sample; Antarctic (ecotone) soil
26
99
+
Gly
TCC
[ENA]
¢þ
>C181175108
CP029145
Bacteroidota
Hymenobacter nivis NBRC 111535 [CP029145]
2893488
2893415
-
Gly
TCC
-
¡û
>C181187367
CP030041
Bacteroidota
Echinicola strongylocentroti MEBiC08714 [CP030041]
2053577
2053504
-
Gly
TCC
-
¡û
>C191087865
CP032317
Bacteroidota
Hymenobacter oligotrophus sh-6 [CP032317]
3741527
3741600
+
Gly
TCC
-
¡û
>W141699655
JMIH01000014
Bacteroidota
Anditalea andensis [JMIH]
619963
619888
-
Gly
TCC
[ENA]
¡û
>W1910547388
FZNS01000002
Bacteroidota
Hymenobacter mucosus DSM 28041 [FZNS]
669328
669255
-
Gly
TCC
[ENA]
¡û
>W1910548304
FZOK01000008
Bacteroidota
Belliella buryatensis 5C [FZOK]
110765
110692
-
Gly
TCC
[ENA]
¡û
>W1911726798
QTJY01000004
Bacteroidota
Larkinella soli MIMbqt9 [QTJY]
272689
272762
+
Gly
TCC
[ENA]
¡û
>W1911775201
QXML01000001
Bacteroidota
Algoriphagus lacus N3 [QXML]
868673
868746
+
Gly
TCC
[ENA]
¡û
>W1810089892
PGFA01000002
Bacteroidota
Hymenobacter chitinivorans DSM 11115 [PGFA]
311957
312030
+
Gly
TCC
[ENA]
¡û
>W1810365007
PVTR01000008
Bacteroidota
Mongoliibacter ruber DSM 27929 [PVTR]
169029
168956
-
Gly
TCC
[ENA]
¡û
>W1810400581
PYGF01000003
Bacteroidota
Cecembia rubra DSM 28057 [PYGF]
116932
116859
-
Gly
TCC
[ENA]
¡û
>W1810531992
QCXY01000009
Bacteroidota
Pleomorphovibrio marinus SW125 [QCXY]
66612
66539
-
Gly
TCC
[ENA]
¡û
>W1810625894
QHKM01000003
Bacteroidota
Hymenobacter edaphi NL [QHKM]
160681
160754
+
Gly
TCC
[ENA]
¡û
>W1810678951
QKNS01000001
Bacteroidota
Hymenobacter sediminis ELS1360 [QKNS]
864966
865039
+
Gly
TCC
[ENA]
¡û
>W1810686023
QKZT01000002
Bacteroidota
Algoriphagus chordae DSM 19830 [QKZT]
166248
166175
-
Gly
TCC
[ENA]
¡û
>W1810686051
QKZU01000002
Bacteroidota
Algoriphagus ratkowskyi DSM 22686 [QKZU]
217118
217191
+
Gly
TCC
[ENA]
¡û
>W1810912363
QVLT01000001
Bacteroidota
Hymenobacter sp. CCM 8763 [QVLT]
110983
110910
-
Gly
TCC
[ENA]
¡û
>C151064000
CP010054
Bacteroidota
Hymenobacter sp. DG25B [CP010054]
3640765
3640692
-
Gly
TCC
[Ensembl]
¡û
>C151090012
CP012040
Bacteroidota
Cyclobacterium amurskyense KCTC 12363 [CP012040]
3027113
3027188
+
Gly
TCC
[Ensembl]
¡û
>C151096193
CP012623
Bacteroidota
Hymenobacter sp. DG25A [CP012623]
198662
198735
+
Gly
TCC
-
¡û
>W1511543314
JZIR01000059
Bacteroidota
Hymenobacter sp. AT01-02 [JZIR]
42719
42794
+
Gly
TCC
[ENA]
¡û
>W1511582951
LATM01000012
Bacteroidota
Hymenobacter terrenus MIMtkLc17 [LATM]
20525
20450
-
Gly
TCC
[ENA]
¡û
>C121010183
CP003281
Bacteroidota
Belliella baltica DSM 15883 [CP003281]
1802734
1802809
+
Gly
TCC
[Ensembl]
¡û
>C161046168
CP012836
Bacteroidota
Algoriphagus sanaruensis M8-2 [CP012836]
1231186
1231259
+
Gly
TCC
[Ensembl]
¡û
>C161070734
CP014304
Bacteroidota
Hymenobacter sp. PAMC 26628 [CP014304]
4150570
4150497
-
Gly
TCC
[Ensembl]
¡û
>C161077112
CP014771
Bacteroidota
Hymenobacter sp. PAMC 26554 [CP014771]
3761845
3761918
+
Gly
TCC
[Ensembl]
¡û
>W1610050117
BBFN01000020
Bacteroidota
Algoriphagus boritolerans DSM 17298 = JCM 18970 [BBFN]
27734
27807
+
Gly
TCC
[ENA]
¡û
>W121064848
AJMQ01000109
Bacteroidota
Marinilabilia nitratireducens AK2 [AJMQ]
65931
65856
-
Gly
TCC
[ENA]
¡û
>W121071516
AJYA01000002
Bacteroidota
Nitritalea halalkaliphila LW7 [AJYA]
41021
41094
+
Gly
TCC
[ENA]
¡û
>C131003320
CP003346
Bacteroidota
Echinicola vietnamensis DSM 17526 [CP003346]
276114
276039
-
Gly
TCC
[Ensembl]
¡û
>W1610747839
LMXN01000013
Bacteroidota
Algoriphagus resistens NH1 [LMXN]
93879
93806
-
Gly
TCC
[ENA]
¡û
>W1610749697
LNAL01000008
Bacteroidota
Solirubrum puertoriconensis MC1A [LNAL]
811671
811744
+
Gly
TCC
[ENA]
¡û
>W1710046516
BBFN01000020
Bacteroidota
Algoriphagus boritolerans DSM 17298 = JCM 18970 [BBFN]
27734
27807
+
Gly
TCC
[ENA]
¡û
>W1710530553
FNOV01000003
Bacteroidota
Hymenobacter psychrophilus [FNOV]
178171
178098
-
Gly
TCC
[ENA]
¡û
>W1710539766
FNVR01000002
Bacteroidota
Algoriphagus boritolerans DSM 17298 = JCM 18970 [FNVR]
235099
235172
+
Gly
TCC
[ENA]
¡û
>W1710542625
FNZH01000003
Bacteroidota
Cyclobacterium xiamenense halophilum [FNZH]
668359
668434
+
Gly
TCC
[ENA]
¡û
>W1710544832
FOBB01000012
Bacteroidota
Chitinophaga rupis [FOBB]
245450
245375
-
Gly
TCC
[ENA]
¡û
>W1710553561
FOHS01000001
Bacteroidota
Hymenobacter actinosclerus [FOHS]
566811
566884
+
Gly
TCC
[ENA]
¡û
>W1710556691
FOKK01000002
Bacteroidota
Algoriphagus aquimarinus [FOKK]
77011
76938
-
Gly
TCC
[ENA]
¡û
>W1710571387
FOVW01000004
Bacteroidota
Algoriphagus ornithinivorans [FOVW]
309565
309640
+
Gly
TCC
[ENA]
¡û
>W1710587457
FQYN01000002
Bacteroidota
Hymenobacter daecheongensis DSM 21074 [FQYN]
584975
584902
-
Gly
TCC
[ENA]
¡û
>W1710590097
FRAS01000002
Bacteroidota
Hymenobacter psychrotolerans DSM 18569 [FRAS]
90182
90255
+
Gly
TCC
[ENA]
¡û
>W1710593741
FRXN01000004
Bacteroidota
Algoriphagus zhangzhouensis [FRXN]
343552
343627
+
Gly
TCC
[ENA]
¡û
>W1710608451
FXAW01000007
Bacteroidota
Marivirga sericea [FXAW]
52997
52922
-
Gly
TCC
[ENA]
¡û
>W1710610176
FYEW01000002
Bacteroidota
Hymenobacter gelipurpurascens [FYEW]
669057
668984
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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