This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.284499 (59 seq.)
>W1711021977
LQZQ01000045
Bacteroidota
Roseivirga ehrenbergii [LQZQ]
303442
303517
+
Thr
TGT
[ENA]
¡û
>W1711220384
LXQK01000115
Bacteroidota
Marivirga sp. ANT-B6 [LXQK]
15970
16043
+
Thr
TGT
[ENA]
¡û
>W131167761
ARDN01000004
Bacteroidota
Echinicola pacifica DSM 19836 [ARDN]
15531
15604
+
Thr
TGT
[ENA]
¡û
>W131167762
ARDN01000004
Bacteroidota
Echinicola pacifica DSM 19836 [ARDN]
15649
15722
+
Thr
TGT
[ENA]
¡û
>W131180767
ARNJ01000063
Bacteroidota
Hymenobacter aerophilus DSM 13606 [ARNJ]
144100
144173
+
Thr
TGT
[ENA]
¡û
>W131211902
ATNM01000052
Bacteroidota
Cyclobacterium qasimii M12-11B [ATNM]
5365
5292
-
Thr
TGT
[ENA]
¡û
>W1712105571
NIRR01000006
Bacteroidota
Hymenobacter amundsenii CCM 8682 [NIRR]
40431
40358
-
Thr
TGT
[ENA]
¡û
>C005840
CP000383
Bacteroidota
Cytophaga hutchinsonii ATCC 33406 [CP000383]
1973455
1973530
+
Thr
TGT
[Ensembl]
¡û
>C005841
CP000383
Bacteroidota
Cytophaga hutchinsonii ATCC 33406 [CP000383]
1973775
1973847
+
Thr
TGT
[Ensembl]
¡û
>WENV180021038
FTDL01000111
[FTDL] metagenome; soil
15970
15897
-
Thr
TGT
[ENA]
¢þ
>WENV180021039
FTDL01000111
[FTDL] metagenome; soil
15552
15479
-
Thr
TGT
[ENA]
¢þ
>WENV180025883
FTIQ01469630
[FTIQ] metagenome; soil
39
112
+
Thr
TGT
[ENA]
¢þ
>w002453
AABD03000010
Bacteroidota
Cytophaga hutchinsonii [AABD]
57331
57408
+
Thr
TGT
[ENA]
¡û
>w002452
AABD03000010
Bacteroidota
Cytophaga hutchinsonii [AABD]
57011
57088
+
Thr
TGT
[ENA]
¡û
>W141142876
AWRU01000032
Bacteroidota
Pedobacter sp. V48 [AWRU]
35009
34936
-
Thr
TGT
[ENA]
¡û
>WENV181843266
OGVU01005425
[OGVU] freshwater metagenome; freshwater
814
741
-
Thr
TGT
[ENA]
¢þ
>WENV183725671
PJQF01006516
[PJQF] biofilm metagenome; biomolecule (vanillin) treated reverse osmosis membrane biofilm
452
379
-
Thr
TGT
[ENA]
¢þ
>WENV183732410
PJTX01000136
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
1628
1701
+
Thr
TGT
[ENA]
¢þ
>WENV183732768
PJTX01011910
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
861
934
+
Thr
TGT
[ENA]
¢þ
>WENV183750471
PPFU01308352
[PPFU] hypolithon metagenome; Antarctic Hypolithon
6028
5955
-
Thr
TGT
[ENA]
¢þ
>WENV170990693
MWWA01029252
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
350
275
-
Thr
TGT
[ENA]
¢þ
>WENV170991829
MWWA01337610
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
107
180
+
Thr
TGT
[ENA]
¢þ
>WENV170994775
MWWE01047312
[MWWE] soil metagenome; MS1-1 sample; Antarctic (ecotone) soil
202
129
-
Thr
TGT
[ENA]
¢þ
>WENV170994787
MWWE01052921
[MWWE] soil metagenome; MS1-1 sample; Antarctic (ecotone) soil
504
577
+
Thr
TGT
[ENA]
¢þ
>WENV170994799
MWWE01055683
[MWWE] soil metagenome; MS1-1 sample; Antarctic (ecotone) soil
152
227
+
Thr
TGT
[ENA]
¢þ
>WENV170997458
MWWG01143479
[MWWG] soil metagenome; MG6-4 sample; Antarctic (ecotone) soil
126
201
+
Thr
TGT
[ENA]
¢þ
>C181187374
CP030041
Bacteroidota
Echinicola strongylocentroti MEBiC08714 [CP030041]
76013
75940
-
Thr
TGT
-
¡û
>C181187375
CP030041
Bacteroidota
Echinicola strongylocentroti MEBiC08714 [CP030041]
75762
75689
-
Thr
TGT
-
¡û
>C191175195
CP040106
Bacteroidota
Echinicola rosea JL3085 [CP040106]
4308440
4308513
+
Thr
TGT
-
¡û
>C191189169
CP041253
Bacteroidota
Echinicola soli LN3S3 [CP041253]
4152758
4152831
+
Thr
TGT
-
¡û
>C191189170
CP041253
Bacteroidota
Echinicola soli LN3S3 [CP041253]
4152883
4152956
+
Thr
TGT
-
¡û
>W141699663
JMIH01000016
Bacteroidota
Anditalea andensis [JMIH]
96329
96256
-
Thr
TGT
[ENA]
¡û
>W141699664
JMIH01000016
Bacteroidota
Anditalea andensis [JMIH]
96243
96168
-
Thr
TGT
[ENA]
¡û
>W1910237083
FPJX01000010
Bacteroidota
Cytophaga hutchinsonii ATCC 33406 DSM 1761 [FPJX]
187003
187076
+
Thr
TGT
[ENA]
¡û
>W1910237084
FPJX01000010
Bacteroidota
Cytophaga hutchinsonii ATCC 33406 DSM 1761 [FPJX]
187323
187396
+
Thr
TGT
[ENA]
¡û
>W1910547383
FZNS01000001
Bacteroidota
Hymenobacter mucosus DSM 28041 [FZNS]
187358
187285
-
Thr
TGT
[ENA]
¡û
>W1910584198
JXSZ01000005
Bacteroidota
Jiulongibacter sediminis JN14-9 [JXSZ]
199858
199931
+
Thr
TGT
[ENA]
¡û
>W1911788136
QYCN01000002
Bacteroidota
Hymenobacter rubripertinctus CCM 8852 [QYCN]
76895
76822
-
Thr
TGT
[ENA]
¡û
>W1810531980
QCXY01000004
Bacteroidota
Pleomorphovibrio marinus SW125 [QCXY]
384989
384916
-
Thr
TGT
[ENA]
¡û
>W1810564214
QEAS01000017
Bacteroidota
Pararcticibacter amylolyticus FJ4-8 [QEAS]
72402
72328
-
Thr
TGT
[ENA]
¡û
>W1810594599
QGDC01000001
Bacteroidota
Mucilaginibacter hurinus ZR32 [QGDC]
485923
485850
-
Thr
TGT
[ENA]
¡û
>W1810678979
QKNS01000006
Bacteroidota
Hymenobacter sediminis ELS1360 [QKNS]
230568
230641
+
Thr
TGT
[ENA]
¡û
>W1810686068
QKZU01000007
Bacteroidota
Algoriphagus ratkowskyi DSM 22686 [QKZU]
164881
164808
-
Thr
TGT
[ENA]
¡û
>W1810912384
QVLT01000015
Bacteroidota
Hymenobacter sp. CCM 8763 [QVLT]
47698
47771
+
Thr
TGT
[ENA]
¡û
>W1810917797
QWDE01000003
Bacteroidota
Mucilaginibacter terrenus ZH6 [QWDE]
381448
381375
-
Thr
TGT
[ENA]
¡û
>C151009423
CP006587
Bacteroidota
Hymenobacter sp. APR13 [CP006587]
4226959
4226886
-
Thr
TGT
[Ensembl]
¡û
>C151017356
CP007145
Bacteroidota
Hymenobacter swuensis DY53 [CP007145]
2513192
2513265
+
Thr
TGT
[Ensembl]
¡û
>C151090015
CP012040
Bacteroidota
Cyclobacterium amurskyense KCTC 12363 [CP012040]
3715845
3715918
+
Thr
TGT
[Ensembl]
¡û
>C11105722
CP002955
Bacteroidota
Cyclobacterium marinum DSM 745 [CP002955]
3675626
3675699
+
Thr
TGT
[Ensembl]
¡û
>C11115222
CP002349
Bacteroidota
Marivirga tractuosa DSM 4126 [CP002349]
294256
294329
+
Thr
TGT
[Ensembl]
¡û
>W1511543299
JZIR01000001
Bacteroidota
Hymenobacter sp. AT01-02 [JZIR]
7865
7792
-
Thr
TGT
[ENA]
¡û
>W1610617445
LGTQ01000005
Bacteroidota
Jiulongibacter sediminis JN14-9 [LGTQ]
199858
199931
+
Thr
TGT
[ENA]
¡û
>W1611004856
LXQK01000115
Bacteroidota
Marivirga sp. ANT-B6 [LXQK]
15970
16043
+
Thr
TGT
[ENA]
¡û
>W1710530575
FNOV01000016
Bacteroidota
Hymenobacter psychrophilus [FNOV]
35438
35513
+
Thr
TGT
[ENA]
¡û
>W1710553578
FOHS01000002
Bacteroidota
Hymenobacter actinosclerus [FOHS]
377007
376934
-
Thr
TGT
[ENA]
¡û
>W1710556696
FOKK01000004
Bacteroidota
Algoriphagus aquimarinus [FOKK]
124514
124589
+
Thr
TGT
[ENA]
¡û
>W1710560887
FONS01000013
Bacteroidota
Pedobacter antarcticus [FONS]
103066
102993
-
Thr
TGT
[ENA]
¡û
>W1710590121
FRAS01000020
Bacteroidota
Hymenobacter psychrotolerans DSM 18569 [FRAS]
66860
66933
+
Thr
TGT
[ENA]
¡û
>W1710743032
LGTQ01000005
Bacteroidota
Jiulongibacter sediminis JN14-9 [LGTQ]
199858
199931
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK