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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.284508 (22 seq.)
>W131186725
ARWI01000001
Gammaproteobacteria
Thiomicrorhabdus sp. Kp2 Kp2 [ARWI]
249862
249786
-
Asp
GTC
[ENA]
¡û
>W131186727
ARWI01000001
Gammaproteobacteria
Thiomicrorhabdus sp. Kp2 Kp2 [ARWI]
249587
249511
-
Asp
GTC
[ENA]
¡û
>WENV180115968
OAPT01082694
[OAPT] marine metagenome; seawater
457
381
-
Asp
GTC
[ENA]
¢þ
>WENV180587468
OCOO01004767
[OCOO] marine metagenome; seawater
721
645
-
Asp
GTC
[ENA]
¢þ
>WENV183706783
PDWI01005487
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
16333
16257
-
Asp
GTC
[ENA]
¢þ
>WENV170501250
CEVU01095390
[CEVU] marine metagenome genome assembly TARA_151_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
936
860
-
Asp
GTC
[ENA]
¢þ
>WENV170615709
FUWD012865785
[FUWD] metagenome; unknown
638
562
-
Asp
GTC
[ENA]
¢þ
>C191098439
CP033040
Gammaproteobacteria
Thiomicrorhabdus indica 13-15A [CP033040]
1431249
1431325
+
Asp
GTC
-
¡û
>C191098441
CP033040
Gammaproteobacteria
Thiomicrorhabdus indica 13-15A [CP033040]
1431498
1431574
+
Asp
GTC
-
¡û
>C191098443
CP033040
Gammaproteobacteria
Thiomicrorhabdus indica 13-15A [CP033040]
1431738
1431814
+
Asp
GTC
-
¡û
>C191180154
CP040602
Gammaproteobacteria
Thiomicrorhabdus sediminis G1 [CP040602]
1169024
1169100
+
Asp
GTC
-
¡û
>C191180156
CP040602
Gammaproteobacteria
Thiomicrorhabdus sediminis G1 [CP040602]
1169298
1169374
+
Asp
GTC
-
¡û
>W1810602921
QGKL01000044
Gammaproteobacteria
Leucothrix arctica IMCC9719 [QGKL]
9377
9301
-
Asp
GTC
[ENA]
¡û
>W1810602923
QGKL01000044
Gammaproteobacteria
Leucothrix arctica IMCC9719 [QGKL]
9153
9077
-
Asp
GTC
[ENA]
¡û
>W1810602925
QGKL01000044
Gammaproteobacteria
Leucothrix arctica IMCC9719 [QGKL]
8922
8846
-
Asp
GTC
[ENA]
¡û
>W1810602940
QGKM01000012
Gammaproteobacteria
Leucothrix pacifica JCM 18388 [QGKM]
30857
30933
+
Asp
GTC
[ENA]
¡û
>W1810602942
QGKM01000012
Gammaproteobacteria
Leucothrix pacifica JCM 18388 [QGKM]
31079
31155
+
Asp
GTC
[ENA]
¡û
>ENV09001717
ACQI01003520
Hydrothermal vent metagenome LCHCB.C1
118
194
+
Asp
GTC
[ENA]
¡û
>ENV09001719
ACQI01003520
Hydrothermal vent metagenome LCHCB.C1
503
579
+
Asp
GTC
[ENA]
¡û
>WENV069815
AACY023784495
Marine microbial communities from Global Ocean Sampling (GOS)
7
83
+
Asp
GTC
[ENA]
>WENV069817
AACY023784495
Marine microbial communities from Global Ocean Sampling (GOS)
246
322
+
Asp
GTC
[ENA]
>WENV069819
AACY023784495
Marine microbial communities from Global Ocean Sampling (GOS)
484
560
+
Asp
GTC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK