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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.284522 (50 seq.)
>W1710855732
LLYZ01000010
Bacteroidota
Chryseobacterium aquaticum [LLYZ]
3680
3605
-
Gln
TTG
[ENA]
¡û
>W1710857463
LMAH01000004
Bacteroidota
Chryseobacterium sp. JAH [LMAH]
13713
13638
-
Gln
TTG
[ENA]
¡û
>W1710857536
LMAI01000010
Bacteroidota
Chryseobacterium aquaticum greenlandense [LMAI]
148120
148195
+
Gln
TTG
[ENA]
¡û
>W1711314230
MAUH01000001
Bacteroidota
Chryseobacterium sp. CBo1 [MAUH]
317159
317234
+
Gln
TTG
[ENA]
¡û
>W131237005
AUMT01000008
Bacteroidota
Chryseobacterium daeguense DSM 19388 [AUMT]
108076
108003
-
Gln
TTG
[ENA]
¡û
>W1711767773
MVAG01000113
Bacteroidota
Chryseobacterium mucoviscidosis VT16-26 [MVAG]
110802
110877
+
Gln
TTG
[ENA]
¡û
>WENV181731528
OGQD01001224
[OGQD] human gut metagenome; faeces
3327
3400
+
Gln
TTG
[ENA]
¢þ
>W141223091
BACY01000270
Bacteroidota
Flavobacterium sp. B17 [BACY]
29455
29528
+
Gln
TTG
[ENA]
¡û
>W141261523
CCAV010000004
Bacteroidota
Chryseobacterium oranimense G311 [CCAV]
289386
289313
-
Gln
TTG
[ENA]
¡û
>W141289845
JARQ01000010
Bacteroidota
Chryseobacterium hispalense DSM 25574 [JARQ]
96524
96449
-
Gln
TTG
[ENA]
¡û
>WENV183734564
PJTZ01018186
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
671
598
-
Gln
TTG
[ENA]
¢þ
>WENV170011101
APMI01043373
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
3395
3320
-
Gln
TTG
[ENA]
¢þ
>C191099973
CP033070
Bacteroidota
Chryseobacterium sp. 3008163 [CP033070]
1429072
1428999
-
Gln
TTG
-
¡û
>C191116110
CP033928
Bacteroidota
Chryseobacterium indoltheticum G0211 [CP033928]
1882175
1882102
-
Gln
TTG
-
¡û
>C191116128
CP033929
Bacteroidota
Chryseobacterium indoltheticum ATCC 27950 [CP033929]
1136880
1136953
+
Gln
TTG
-
¡û
>C191116437
CP033932
Bacteroidota
Chryseobacterium bernardetii G0229 [CP033932]
580550
580477
-
Gln
TTG
-
¡û
>C191116550
CP033934
Bacteroidota
Chryseobacterium balustinum KC_1863 [CP033934]
3477878
3477805
-
Gln
TTG
-
¡û
>W141809236
JPRI01000002
Bacteroidota
Chryseobacterium vrystaatense [JPRI]
671501
671426
-
Gln
TTG
[ENA]
¡û
>W141809583
JPRP01000001
Bacteroidota
Chryseobacterium formosense [JPRP]
1055963
1056038
+
Gln
TTG
[ENA]
¡û
>W1911701393
QNUH01000013
Bacteroidota
Chryseobacterium elymi KCTC 22547 [QNUH]
82969
83042
+
Gln
TTG
[ENA]
¡û
>W1911701750
QNVS01000062
Bacteroidota
Chryseobacterium piscium CCUG 51923 [QNVS]
3042
3115
+
Gln
TTG
[ENA]
¡û
>W1911701908
QNVU01000033
Bacteroidota
Candidatus Chryseobacterium massiliae massiliae CCUG 51329 [QNVU]
27068
27141
+
Gln
TTG
[ENA]
¡û
>W1911702036
QNVW01000023
Bacteroidota
Chryseobacterium sp. 5_R23647 [QNVW]
36125
36052
-
Gln
TTG
[ENA]
¡û
>W1810071745
PEEX01000001
Bacteroidota
Chryseobacterium sp. 52 [PEEX]
1389974
1390047
+
Gln
TTG
[ENA]
¡û
>W1810090054
PGFD01000004
Bacteroidota
Chryseobacterium geocarposphaerae DSM 27617 [PGFD]
152447
152520
+
Gln
TTG
[ENA]
¡û
>W1810193882
PKNN01000008
Bacteroidota
Chryseobacterium scophthalmum VV8 [PKNN]
26965
27038
+
Gln
TTG
[ENA]
¡û
>W1810475280
QAIX01000247
Bacteroidota
Chryseobacterium sp. HMWF001 [QAIX]
2781
2708
-
Gln
TTG
[ENA]
¡û
>W1810570164
QEHP01000125
Bacteroidota
Chryseobacterium sp. HMWF035 [QEHP]
30645
30572
-
Gln
TTG
[ENA]
¡û
>W1810707223
QNFY01000012
Bacteroidota
Chryseobacterium lathyri KCTC 22544 [QNFY]
38833
38906
+
Gln
TTG
[ENA]
¡û
>W1810860736
QTTJ01000001
Bacteroidota
Chryseobacterium sp. 1335 [QTTJ]
2755420
2755347
-
Gln
TTG
[ENA]
¡û
>W1511432054
JUGG01000008
Bacteroidota
Chryseobacterium sp. YR460 [JUGG]
191574
191649
+
Gln
TTG
[ENA]
¡û
>W1511432321
JUGK01000017
Bacteroidota
Chryseobacterium sp. YR005 [JUGK]
177110
177035
-
Gln
TTG
[ENA]
¡û
>W1511432774
JUGT01000011
Bacteroidota
Chryseobacterium sp. YR561 [JUGT]
542168
542093
-
Gln
TTG
[ENA]
¡û
>W1511489568
JWTA01000014
Bacteroidota
Chryseobacterium taiwanense TPW19 [JWTA]
65515
65590
+
Gln
TTG
[ENA]
¡û
>C161055039
CP013293
Bacteroidota
Chryseobacterium sp. IHB B 17019 [CP013293]
129797
129872
+
Gln
TTG
[Ensembl]
¡û
>C161084478
CP015199
Bacteroidota
Chryseobacterium glaciei IHBB 10212 [CP015199]
1075824
1075751
-
Gln
TTG
[Ensembl]
¡û
>W1610718113
LLYZ01000010
Bacteroidota
Chryseobacterium aquaticum [LLYZ]
3680
3605
-
Gln
TTG
[ENA]
¡û
>W1610719844
LMAH01000004
Bacteroidota
Chryseobacterium sp. JAH [LMAH]
13713
13638
-
Gln
TTG
[ENA]
¡û
>W1610719917
LMAI01000010
Bacteroidota
Chryseobacterium aquaticum greenlandense [LMAI]
148120
148195
+
Gln
TTG
[ENA]
¡û
>W1611059105
MAUH01000001
Bacteroidota
Chryseobacterium sp. CBo1 [MAUH]
317159
317234
+
Gln
TTG
[ENA]
¡û
>W1710518210
FNDW01000004
Bacteroidota
Chryseobacterium taeanense [FNDW]
147327
147402
+
Gln
TTG
[ENA]
¡û
>W1710545864
FOBV01000005
Bacteroidota
Chryseobacterium taichungense [FOBV]
135351
135426
+
Gln
TTG
[ENA]
¡û
>W1710554881
FOIU01000005
Bacteroidota
Chryseobacterium wanjuense [FOIU]
103815
103740
-
Gln
TTG
[ENA]
¡û
>W1710577117
FPAP01000002
Bacteroidota
Chryseobacterium formosense [FPAP]
822445
822520
+
Gln
TTG
[ENA]
¡û
>W1710583405
FQUT01000005
Bacteroidota
Chryseobacterium arachidis [FQUT]
198458
198533
+
Gln
TTG
[ENA]
¡û
>W1710583911
FQVE01000002
Bacteroidota
Chryseobacterium vrystaatense YR203 [FQVE]
158104
158179
+
Gln
TTG
[ENA]
¡û
>W1710595004
FSRQ01000004
Bacteroidota
Chryseobacterium scophthalmum [FSRQ]
27523
27598
+
Gln
TTG
[ENA]
¡û
>W1710595913
FTMF01000021
Bacteroidota
Chryseobacterium indoltheticum [FTMF]
27189
27264
+
Gln
TTG
[ENA]
¡û
>W1710599618
FTOV01000005
Bacteroidota
Chryseobacterium gambrini [FTOV]
124084
124009
-
Gln
TTG
[ENA]
¡û
>W1710603571
FUZE01000002
Bacteroidota
Chryseobacterium balustinum [FUZE]
389055
388982
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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