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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.284570 (93 seq.)
>W1710864341
LMFU01000002
Actinomycetota
Agromyces sp. Root1464 [LMFU]
247983
248058
+
Val
TAC
[ENA]
¡û
>W1710867908
LMIR01000001
Actinomycetota
Agromyces sp. Root81 [LMIR]
340806
340881
+
Val
TAC
[ENA]
¡û
>W1710870603
LMKQ01000001
Actinomycetota
Agromyces sp. Leaf222 [LMKQ]
2272303
2272230
-
Val
TAC
[ENA]
¡û
>W1710876056
LMOX01000001
Actinomycetota
Frigoribacterium sp. Leaf164 [LMOX]
1178616
1178691
+
Val
TAC
[ENA]
¡û
>W1710879760
LMRW01000023
Actinomycetota
Agromyces sp. Soil535 [LMRW]
148218
148291
+
Val
TAC
[ENA]
¡û
>W1711003319
LQGY01000060
Actinomycetota
Agromyces sp. NDB4Y10 [LQGY]
16802
16729
-
Val
TAC
[ENA]
¡û
>W1711018569
LQXA01000035
Actinomycetota
Clavibacter michiganensis subsp. tessellarius [LQXA]
204691
204616
-
Val
TAC
[ENA]
¡û
>W1711079600
LSOE01000006
Actinomycetota
Clavibacter nebraskensis subsp. nebraskensis [LSOE]
101670
101745
+
Val
TAC
[ENA]
¡û
>W1711357187
MDHB01000002
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHB]
535294
535219
-
Val
TAC
[ENA]
¡û
>W1711357218
MDHC01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHC]
1812167
1812242
+
Val
TAC
[ENA]
¡û
>W1711357251
MDHD01000028
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHD]
59850
59925
+
Val
TAC
[ENA]
¡û
>W1711357327
MDHE01000394
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHE]
42197
42272
+
Val
TAC
[ENA]
¡û
>W1711357339
MDHF01000017
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHF]
9184
9109
-
Val
TAC
[ENA]
¡û
>W1711357383
MDHG01000002
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHG]
198525
198600
+
Val
TAC
[ENA]
¡û
>W1711357457
MDHH01000005
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHH]
46244
46319
+
Val
TAC
[ENA]
¡û
>W1711357487
MDHI01000004
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHI]
1391104
1391179
+
Val
TAC
[ENA]
¡û
>W1711357533
MDHJ01000001
Actinomycetota
Clavibacter michiganensis [MDHJ]
1746382
1746457
+
Val
TAC
[ENA]
¡û
>W1711357586
MDHK01000042
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHK]
83382
83457
+
Val
TAC
[ENA]
¡û
>W1711357623
MDHL01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHL]
1857051
1857126
+
Val
TAC
[ENA]
¡û
>W1711357667
MDHM01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHM]
1822409
1822484
+
Val
TAC
[ENA]
¡û
>W1711360722
MDJW01000012
Actinomycetota
Clavibacter michiganensis [MDJW]
259019
258944
-
Val
TAC
[ENA]
¡û
>W1711360740
MDJX01000091
Actinomycetota
Clavibacter michiganensis [MDJX]
48577
48502
-
Val
TAC
[ENA]
¡û
>W1711360811
MDJY01000059
Actinomycetota
Clavibacter michiganensis [MDJY]
35876
35951
+
Val
TAC
[ENA]
¡û
>W1711360826
MDJZ01000004
Actinomycetota
Clavibacter michiganensis [MDJZ]
74860
74935
+
Val
TAC
[ENA]
¡û
>W131217892
ATXF01000001
Actinomycetota
Agromyces italicus DSM 16388 [ATXF]
38787
38860
+
Val
TAC
[ENA]
¡û
>W131217976
ATXG01000018
Actinomycetota
Agromyces subbeticus DSM 16689 [ATXG]
47184
47109
-
Val
TAC
[ENA]
¡û
>C171111604
CP020715
Actinomycetota
Cnuibacter physcomitrellae [CP020715]
2103148
2103073
-
Val
TAC
-
¡û
>C006149
AM711867
Actinomycetota
Clavibacter michiganensis subsp. michiganensis NCPPB 382 [AM711867]
1838068
1838143
+
Val
TAC
[Ensembl]
¡û
>WENV180097739
MTBK01208403
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
1265
1338
+
Val
TAC
[ENA]
¢þ
>WENV180391611
OBPN01011944
[OBPN] marine metagenome; seawater
638
565
-
Val
TAC
[ENA]
¢þ
>WENV180691331
OCZS010102008
[OCZS] soil metagenome; soil
736
811
+
Val
TAC
[ENA]
¢þ
>C08003552
AM849034
Actinomycetota
Clavibacter michiganensis subsp. sepedonicus ATCC 33113 [AM849034]
1690791
1690866
+
Val
TAC
[Ensembl]
¡û
>C181048905
CP021034
Actinomycetota
Clavibacter michiganensis subsp. insidiosus R1-3 [CP021034]
1600264
1600190
-
Val
TAC
-
¡û
>C181048927
CP021038
Actinomycetota
Clavibacter michiganensis subsp. insidiosus ATCC 10253 [CP021038]
1590861
1590935
+
Val
TAC
-
¡û
>C181169627
CP028913
Actinomycetota
Agromyces badenianii MF30-A [CP028913]
1492599
1492673
+
Val
TAC
-
¡û
>C191011725
CP014619
Actinomycetota
Frondihabitans sp. 762G35 [CP014619]
1669040
1668967
-
Val
TAC
-
¡û
>C191130413
CP034753
Actinomycetota
Agromyces sp. LHK192 [CP034753]
1993172
1993246
+
Val
TAC
-
¡û
>C191143835
CP035491
Actinomycetota
Agromyces protaetiae FW100M-8 [CP035491]
2767267
2767194
-
Val
TAC
-
¡û
>C191183342
CP040872
Actinomycetota
Agromyces laixinhei HY052 [CP040872]
2209744
2209669
-
Val
TAC
-
¡û
>W1910839657
MZMM01000001
Actinomycetota
Clavibacter sepedonicus subsp. sepedonicus CFIA-Cs3N [MZMM]
691309
691383
+
Val
TAC
[ENA]
¡û
>W1910839700
MZMN01000003
Actinomycetota
Clavibacter sepedonicus subsp. sepedonicus CFIA-CsR14 [MZMN]
307105
307179
+
Val
TAC
[ENA]
¡û
>W1910839767
MZMO01000001
Actinomycetota
Clavibacter michiganensis subsp. insidiosus LMG 3663 [MZMO]
1841862
1841788
-
Val
TAC
[ENA]
¡û
>W1910839811
MZMP01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis LMG 7333 [MZMP]
2525991
2525918
-
Val
TAC
[ENA]
¡û
>W1910839854
MZMQ01000001
Actinomycetota
Clavibacter michiganensis subsp. tessellarius ATCC 33566 [MZMQ]
2636031
2635957
-
Val
TAC
[ENA]
¡û
>W1911685507
QKTL01000005
Actinomycetota
Curtobacterium sp. MCBD17_040 [QKTL]
7209
7135
-
Val
TAC
[ENA]
¡û
>W1911685544
QKTM01000001
Actinomycetota
Curtobacterium sp. MCBD17_035 [QKTM]
251530
251456
-
Val
TAC
[ENA]
¡û
>W1911685596
QKTN01000002
Actinomycetota
Curtobacterium sp. MCBD17_034 [QKTN]
226775
226701
-
Val
TAC
[ENA]
¡û
>W1911685692
QKTP01000003
Actinomycetota
Curtobacterium sp. MCBD17_003 [QKTP]
364992
365066
+
Val
TAC
[ENA]
¡û
>W1911685722
QKTQ01000001
Actinomycetota
Curtobacterium sp. MCBD17_028 [QKTQ]
228169
228095
-
Val
TAC
[ENA]
¡û
>W1911685885
QKTT01000010
Actinomycetota
Curtobacterium sp. MCBD17_019 [QKTT]
7096
7022
-
Val
TAC
[ENA]
¡û
>W1911685901
QKTU01000001
Actinomycetota
Curtobacterium sp. MCBD17_013 [QKTU]
329806
329880
+
Val
TAC
[ENA]
¡û
>W1911686065
QKVS01000001
Actinomycetota
Curtobacterium sp. MCBD17_031 [QKVS]
226772
226698
-
Val
TAC
[ENA]
¡û
>W1911748149
QWDZ01000057
Actinomycetota
Clavibacter michiganensis CFBP 1195 [QWDZ]
404
330
-
Val
TAC
[ENA]
¡û
>W1911748210
QWEA01001339
Actinomycetota
Clavibacter michiganensis CFBP 6488 [QWEA]
408
334
-
Val
TAC
[ENA]
¡û
>W1911748219
QWEB01000028
Actinomycetota
Clavibacter michiganensis CFBP 7491 [QWEB]
3010
2936
-
Val
TAC
[ENA]
¡û
>W1911748341
QWED01001068
Actinomycetota
Clavibacter nebraskensis CFBP 7577 [QWED]
116
190
+
Val
TAC
[ENA]
¡û
>W1911748364
QWEE01000050
Actinomycetota
Clavibacter californiensis subsp. californiensis CFBP 8216 [QWEE]
384
310
-
Val
TAC
[ENA]
¡û
>W1911749595
QWGS01000286
Actinomycetota
Clavibacter phaseoli subsp. chilensis CFBP 8217 [QWGS]
137
211
+
Val
TAC
[ENA]
¡û
>W1911749625
QWGT01000060
Actinomycetota
Clavibacter lycopersici CFBP 8615 [QWGT]
420
347
-
Val
TAC
[ENA]
¡û
>W1911749656
QWGU01000037
Actinomycetota
Clavibacter lycopersici CFBP 8616 [QWGU]
12331
12404
+
Val
TAC
[ENA]
¡û
>W1911749701
QWGV01000024
Actinomycetota
Clavibacter phaseoli subsp. phaseoli CFBP 8627 [QWGV]
10625
10699
+
Val
TAC
[ENA]
¡û
>W1810058082
PDJE01000001
Actinomycetota
Microbacterium agarici DSM 21798 [PDJE]
2225345
2225419
+
Val
TAC
[ENA]
¡û
>W1810277219
PSTR01000001
Actinomycetota
Clavibacter michiganensis AY1B2 [PSTR]
51329
51403
+
Val
TAC
[ENA]
¡û
>W1810277269
PSTS01000002
Actinomycetota
Clavibacter michiganensis AY1A6 [PSTS]
84299
84225
-
Val
TAC
[ENA]
¡û
>W1810277417
PSTV01000017
Actinomycetota
Clavibacter michiganensis Z002 [PSTV]
34768
34841
+
Val
TAC
[ENA]
¡û
>W1810277468
PSTW01000021
Actinomycetota
Clavibacter michiganensis Z001 [PSTW]
51301
51374
+
Val
TAC
[ENA]
¡û
>W1810282085
PSXY01000011
Actinomycetota
Clavibacter michiganensis AY1B3 [PSXY]
48814
48740
-
Val
TAC
[ENA]
¡û
>W1810476301
QANL01000003
Actinomycetota
Planctomonas deserti 13S1-3 [QANL]
514186
514260
+
Val
TAC
[ENA]
¡û
>W1810568997
QEFA01000002
Actinomycetota
Agromyces badenianii 845 [QEFA]
587933
587859
-
Val
TAC
[ENA]
¡û
>W1810860790
QTTK01000002
Actinomycetota
Clavibacter sp. 199 [QTTK]
611058
611132
+
Val
TAC
[ENA]
¡û
>W1810860836
QTTL01000001
Actinomycetota
Agromyces sp. OV429 [QTTL]
2428094
2428020
-
Val
TAC
[ENA]
¡û
>W1810886025
QUNT01000001
Actinomycetota
Agromyces sp. OV568 [QUNT]
1048875
1048801
-
Val
TAC
[ENA]
¡û
>C151075642
CP011043
Actinomycetota
Clavibacter michiganensis subsp. insidiosus R1-1 [CP011043]
1517621
1517696
+
Val
TAC
[Ensembl]
¡û
>C151095705
CP012573
Actinomycetota
Clavibacter capsici PF008 [CP012573]
1659631
1659706
+
Val
TAC
-
¡û
>W1511352434
JROD01000004
Actinomycetota
Clavibacter michiganensis CF11 [JROD]
83648
83723
+
Val
TAC
[ENA]
¡û
>W1511570089
LAKL01000016
Actinomycetota
Clavibacter nebraskensis subsp. nebraskensis DOAB 397 [LAKL]
294071
294146
+
Val
TAC
[ENA]
¡û
>C161063215
CP013979
Actinomycetota
Agromyces aureus AR33 [CP013979]
2368085
2368012
-
Val
TAC
[Ensembl]
¡û
>W1610050180
BBFP01000003
Actinomycetota
Agromyces ulmi JCM 13315 [BBFP]
848
923
+
Val
TAC
[ENA]
¡û
>W1610069873
BCSV01000004
Actinomycetota
Curtobacterium ammoniigenes NBRC 101786 [BCSV]
98310
98237
-
Val
TAC
[ENA]
¡û
>C131019536
HE614873
Actinomycetota
Clavibacter nebraskensis NCPPB 2581 type strain: NCPPB 2581 [HE614873]
1673510
1673585
+
Val
TAC
[Ensembl]
¡û
>W1610726687
LMFU01000002
Actinomycetota
Agromyces sp. Root1464 [LMFU]
247983
248058
+
Val
TAC
[ENA]
¡û
>W1610730254
LMIR01000001
Actinomycetota
Agromyces sp. Root81 [LMIR]
340806
340881
+
Val
TAC
[ENA]
¡û
>W1610732949
LMKQ01000001
Actinomycetota
Agromyces sp. Leaf222 [LMKQ]
2272303
2272230
-
Val
TAC
[ENA]
¡û
>W1610738402
LMOX01000001
Actinomycetota
Frigoribacterium sp. Leaf164 [LMOX]
1178616
1178691
+
Val
TAC
[ENA]
¡û
>W1610742106
LMRW01000023
Actinomycetota
Agromyces sp. Soil535 [LMRW]
148218
148291
+
Val
TAC
[ENA]
¡û
>W1610853884
LQGY01000060
Actinomycetota
Agromyces sp. NDB4Y10 [LQGY]
16802
16729
-
Val
TAC
[ENA]
¡û
>W1610867045
LQXA01000035
Actinomycetota
Clavibacter michiganensis subsp. tessellarius [LQXA]
204691
204616
-
Val
TAC
[ENA]
¡û
>W1710046579
BBFP01000003
Actinomycetota
Agromyces ulmi JCM 13315 [BBFP]
848
923
+
Val
TAC
[ENA]
¡û
>W1710067246
BCSV01000004
Actinomycetota
Curtobacterium ammoniigenes NBRC 101786 [BCSV]
98310
98237
-
Val
TAC
[ENA]
¡û
>W1710534557
FNRY01000001
Actinomycetota
Microbacterium humi [FNRY]
2815908
2815981
+
Val
TAC
[ENA]
¡û
>W1710575401
FOZD01000001
Actinomycetota
Agromyces sp. CF514 [FOZD]
2581571
2581498
-
Val
TAC
[ENA]
¡û
>W1710594674
FSRJ01000001
Actinomycetota
Agromyces cerinus subsp. cerinus [FSRJ]
1058182
1058109
-
Val
TAC
[ENA]
¡û
>W1710604651
FVZG01000001
Actinomycetota
Clavibacter michiganensis [FVZG]
1613049
1613124
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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