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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.284624 (30 seq.)
>W1710785350
LJHU01000014
Alphaproteobacteria
Brevundimonas sp. AAP58 [LJHU]
20788
20713
-
Ala
TGC
[ENA]
¡û
>C171110783
CP020612
Alphaproteobacteria
Paracoccus contaminans RKI 16-01929T [CP020612]
1166082
1166007
-
Ala
TGC
-
¡û
>C171110789
CP020612
Alphaproteobacteria
Paracoccus contaminans RKI 16-01929T [CP020612]
581786
581711
-
Ala
TGC
-
¡û
>WENV180116018
OAPT01096866
[OAPT] marine metagenome; seawater
33
108
+
Ala
TGC
[ENA]
¢þ
>WENV181377690
OFRA01025654
[OFRA] wastewater metagenome; Lake Maggiore Verbania
32
107
+
Ala
TGC
[ENA]
¢þ
>C08002360
CP000927
Alphaproteobacteria
Caulobacter sp. K31 [CP000927]
4034437
4034365
-
Ala
TGC
[Ensembl]
¡û
>C08002363
CP000927
Alphaproteobacteria
Caulobacter sp. K31 [CP000927]
4027241
4027169
-
Ala
TGC
[Ensembl]
¡û
>WENV183810975
PVBE011534015
[PVBE] marine metagenome; water
524
599
+
Ala
TGC
[ENA]
¢þ
>WENV170011681
APMI01081746
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
395
470
+
Ala
TGC
[ENA]
¢þ
>WENV170713845
LNFM01044085
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
6458
6383
-
Ala
TGC
[ENA]
¢þ
>C181081645
CP023454
Alphaproteobacteria
Rhodobacteraceae bacterium QY30 [CP023454]
1159778
1159853
+
Ala
TGC
-
¡û
>C181081664
CP023454
Alphaproteobacteria
Rhodobacteraceae bacterium QY30 [CP023454]
3294000
3293925
-
Ala
TGC
-
¡û
>W1911245348
NSJZ01000042
Alphaproteobacteria
Paracoccus salipaludis WN007 [NSJZ]
3435
3360
-
Ala
TGC
[ENA]
¡û
>W1911566769
PCPB01000030
Alphaproteobacteria
Brevundimonas sp. MYb52 [PCPB]
3563
3488
-
Ala
TGC
[ENA]
¡û
>W1911567224
PCPK01000062
Alphaproteobacteria
Brevundimonas sp. MYb33 [PCPK]
3563
3488
-
Ala
TGC
[ENA]
¡û
>W1810684508
QKYL01000202
Alphaproteobacteria
Paracoccus saliphilus CCTCC AB 2016131 [QKYL]
3576
3501
-
Ala
TGC
[ENA]
¡û
>W1810697141
QLUV01000031
Alphaproteobacteria
Paracoccus endophyticus SYSUP0003 [QLUV]
2258
2333
+
Ala
TGC
[ENA]
¡û
>W1511348672
JRKP01000161
Alphaproteobacteria
Paracoccus sanguinis 39524 [JRKP]
2196
2271
+
Ala
TGC
[ENA]
¡û
>W1511348713
JRKQ01000154
Alphaproteobacteria
Paracoccus sanguinis 5503 [JRKQ]
3613
3538
-
Ala
TGC
[ENA]
¡û
>W1511348736
JRKR01000028
Alphaproteobacteria
Paracoccus sanguinis 10990 [JRKR]
7969
7894
-
Ala
TGC
[ENA]
¡û
>W1511348806
JRKS01000111
Alphaproteobacteria
Paracoccus sphaerophysae HAMBI 3106 [JRKS]
3623
3548
-
Ala
TGC
[ENA]
¡û
>W1511348851
JRKT01000118
Alphaproteobacteria
Paracoccus sanguinis 4681 [JRKT]
2197
2272
+
Ala
TGC
[ENA]
¡û
>W1610649156
LJHU01000014
Alphaproteobacteria
Brevundimonas sp. AAP58 [LJHU]
20788
20713
-
Ala
TGC
[ENA]
¡û
>W1710508113
FMVT01000031
Alphaproteobacteria
Paracoccus tibetensis [FMVT]
395
470
+
Ala
TGC
[ENA]
¡û
>W1710521198
FNGE01000043
Alphaproteobacteria
Paracoccus chinensis [FNGE]
3573
3498
-
Ala
TGC
[ENA]
¡û
>W1710528235
FNNA01000013
Alphaproteobacteria
Paracoccus sanguinis [FNNA]
2196
2271
+
Ala
TGC
[ENA]
¡û
>W1710540957
FNXG01000003
Alphaproteobacteria
Paracoccus alkenifer [FNXG]
3617
3542
-
Ala
TGC
[ENA]
¡û
>W1710540966
FNXG01000005
Alphaproteobacteria
Paracoccus alkenifer [FNXG]
3617
3542
-
Ala
TGC
[ENA]
¡û
>W1710540971
FNXG01000014
Alphaproteobacteria
Paracoccus alkenifer [FNXG]
7461
7386
-
Ala
TGC
[ENA]
¡û
>W1710592396
FRCK01000021
Alphaproteobacteria
Paracoccus solventivorans [FRCK]
3653
3578
-
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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