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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.284686 (39 seq.)
>C171115939
CP021112
Alphaproteobacteria
Pseudorhodoplanes sinuspersici RIPI110 [CP021112]
5053633
5053708
+
Glu
TTC
-
¡û
>WENV180032037
FTJU01017036
[FTJU] metagenome; soil
217
292
+
Glu
TTC
[ENA]
¢þ
>WENV180266965
OBEQ011803122
[OBEQ] groundwater metagenome; groundwater
95
20
-
Glu
TTC
[ENA]
¢þ
>WENV180397924
OBPZ01025888
[OBPZ] marine metagenome; ENVO:00002010
204
279
+
Glu
TTC
[ENA]
¢þ
>WENV181166672
OEIU01001082
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
9019
9094
+
Glu
TTC
[ENA]
¢þ
>WENV181167225
OEIU01014731
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
1192
1267
+
Glu
TTC
[ENA]
¢þ
>W08008858
ABLP01000012
Alphaproteobacteria
Methylocella silvestris BL2 [ABLP]
46651
46579
-
Glu
TTC
[ENA]
¡û
>W141214009
AZSJ01000007
Alphaproteobacteria
Afipia sp. P52-10 [AZSJ]
422279
422204
-
Glu
TTC
[ENA]
¡û
>WENV183666113
ORJL010521968
[ORJL] groundwater metagenome; groundwater
164
89
-
Glu
TTC
[ENA]
¢þ
>WENV183673249
ORJL011259383
[ORJL] groundwater metagenome; groundwater
1355
1430
+
Glu
TTC
[ENA]
¢þ
>WENV183679241
ORMF010033906
[ORMF] groundwater metagenome; groundwater
653
728
+
Glu
TTC
[ENA]
¢þ
>WENV183680985
ORMF010247332
[ORMF] groundwater metagenome; groundwater
35122
35047
-
Glu
TTC
[ENA]
¢þ
>WENV183690101
ORMF011544399
[ORMF] groundwater metagenome; groundwater
14
89
+
Glu
TTC
[ENA]
¢þ
>WENV183691566
ORMF011783205
[ORMF] groundwater metagenome; groundwater
26
101
+
Glu
TTC
[ENA]
¢þ
>WENV183691781
ORMF011817645
[ORMF] groundwater metagenome; groundwater
2746
2821
+
Glu
TTC
[ENA]
¢þ
>WENV183692723
ORMF011965574
[ORMF] groundwater metagenome; groundwater
401
326
-
Glu
TTC
[ENA]
¢þ
>WENV170012400
APMI01168507
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
734
659
-
Glu
TTC
[ENA]
¢þ
>WENV170552873
CXWK01003033
[CXWK] wastewater metagenome; activated sludge
4332
4257
-
Glu
TTC
[ENA]
¢þ
>C191005693
AP018907
Alphaproteobacteria
Blastochloris tepida GI [AP018907]
2630145
2630070
-
Glu
TTC
-
¡û
>C191028895
CP024846
Alphaproteobacteria
Beijerinckiaceae bacterium MG08 [CP024846]
248046
247971
-
Glu
TTC
-
¡û
>C191029918
CP025086
Alphaproteobacteria
Methylovirgula ligni BW863 [CP025086]
2319592
2319667
+
Glu
TTC
-
¡û
>C191152094
CP036515
Alphaproteobacteria
Lichenihabitans psoromatis PAMC 29148 [CP036515]
3606339
3606264
-
Glu
TTC
-
¡û
>W141817303
JQKO01000015
Alphaproteobacteria
Methylocapsa aurea [JQKO]
16698
16623
-
Glu
TTC
[ENA]
¡û
>W1911148362
NPEU01000064
Alphaproteobacteria
Rhodoplanes elegans DSM 11907 [NPEU]
12730
12655
-
Glu
TTC
[ENA]
¡û
>W1911148457
NPEW01000067
Alphaproteobacteria
Rhodoplanes serenus DSM 19946 [NPEW]
5900
5825
-
Glu
TTC
[ENA]
¡û
>W1911148488
NPEX01000011
Alphaproteobacteria
Rhodoplanes roseus DSM 5909 [NPEX]
1716
1641
-
Glu
TTC
[ENA]
¡û
>W1911219116
NRRJ01000019
Alphaproteobacteria
Rhodoblastus acidophilus DSM 137 [NRRJ]
23505
23430
-
Glu
TTC
[ENA]
¡û
>W1810068800
PDZR01000015
Alphaproteobacteria
Methylocella silvestris TVC [PDZR]
92039
92114
+
Glu
TTC
[ENA]
¡û
>W1810884373
QUMO01000003
Alphaproteobacteria
Methylovirgula ligni BW863 [QUMO]
281387
281312
-
Glu
TTC
[ENA]
¡û
>W1510741111
CYHC01000002
Alphaproteobacteria
Chelatococcus sambhunathii DSM 18167 [CYHC]
47415
47490
+
Glu
TTC
[ENA]
¡û
>C161048029
CP012946
Alphaproteobacteria
Blastochloris viridis ATCC 19567 [CP012946]
1851419
1851344
-
Glu
TTC
-
¡û
>C161108107
LN907867
Alphaproteobacteria
Blastochloris viridis [LN907867]
1251391
1251316
-
Glu
TTC
[Ensembl]
¡û
>W121103232
AKZI01000130
Alphaproteobacteria
Rhodovulum sp. PH10 [AKZI]
14397
14472
+
Glu
TTC
[ENA]
¡û
>W121110796
ALIQ01000188
Alphaproteobacteria
Chelatococcus sp. GW1 [ALIQ]
12796
12871
+
Glu
TTC
[ENA]
¡û
>W1610631745
LIOL01000002
Alphaproteobacteria
Chelatococcus sambhunathii [LIOL]
47415
47490
+
Glu
TTC
[ENA]
¡û
>W1710527783
FNLG01000001
Alphaproteobacteria
Rhizobiales bacterium GAS113 [FNLG]
1947754
1947679
-
Glu
TTC
[ENA]
¡û
>W1710535670
FNSS01000001
Alphaproteobacteria
Rhizobiales bacterium GAS188 [FNSS]
718830
718905
+
Glu
TTC
[ENA]
¡û
>W1710536004
FNSX01000001
Alphaproteobacteria
Rhizobiales bacterium GAS191 [FNSX]
2874079
2874004
-
Glu
TTC
[ENA]
¡û
>W1710764630
LIOL01000002
Alphaproteobacteria
Chelatococcus sambhunathii [LIOL]
47415
47490
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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