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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.284733 (50 seq.)
>W1710997894
LQCK02000044
Alphaproteobacteria
Sphingomonas melonis TY [LQCK]
332
257
-
Ala
TGC
[ENA]
¡û
>W1711055189
LRUK01000004
Alphaproteobacteria
Sphingobium sp. AM [LRUK]
34449
34374
-
Ala
TGC
[ENA]
¡û
>W1711146795
LVJD01000418
Alphaproteobacteria
Sphingobium yanoikuyae [LVJD]
235
310
+
Ala
TGC
[ENA]
¡û
>W1711146797
LVJD01000419
Alphaproteobacteria
Sphingobium yanoikuyae [LVJD]
235
310
+
Ala
TGC
[ENA]
¡û
>W131219277
ATYK01000003
Alphaproteobacteria
Sphingomonas phyllosphaerae FA2 [ATYK]
336064
336139
+
Ala
TGC
[ENA]
¡û
>W131219282
ATYK01000003
Alphaproteobacteria
Sphingomonas phyllosphaerae FA2 [ATYK]
798203
798278
+
Ala
TGC
[ENA]
¡û
>W131002983
AGZU01000005
Alphaproteobacteria
Sphingobium yanoikuyae ATCC 51230 [AGZU]
175160
175085
-
Ala
TGC
[ENA]
¡û
>W131003005
AGZU01000008
Alphaproteobacteria
Sphingobium yanoikuyae ATCC 51230 [AGZU]
328866
328791
-
Ala
TGC
[ENA]
¡û
>W131003008
AGZU01000008
Alphaproteobacteria
Sphingobium yanoikuyae ATCC 51230 [AGZU]
215982
215907
-
Ala
TGC
[ENA]
¡û
>W131003019
AGZU01000016
Alphaproteobacteria
Sphingobium yanoikuyae ATCC 51230 [AGZU]
553192
553267
+
Ala
TGC
[ENA]
¡û
>C024961
CP000699
Alphaproteobacteria
Rhizorhabdus wittichii RW1 [CP000699]
3846570
3846645
+
Ala
TGC
[Ensembl]
¡û
>C024977
CP000699
Alphaproteobacteria
Rhizorhabdus wittichii RW1 [CP000699]
2812067
2811992
-
Ala
TGC
[Ensembl]
¡û
>WENV180032058
FTJU01029526
[FTJU] metagenome; soil
675
600
-
Ala
TGC
[ENA]
¢þ
>W141076297
ATDO01000119
Alphaproteobacteria
Sphingobium sp. HDIP04 [ATDO]
12262
12337
+
Ala
TGC
[ENA]
¡û
>WENV181145235
OEHO01236966
[OEHO] metagenome; unknown
159
84
-
Ala
TGC
[ENA]
¢þ
>WENV181370922
OFQU01000736
[OFQU] wastewater metagenome; Exp Tend CN 90WW
3011
3086
+
Ala
TGC
[ENA]
¢þ
>WENV181402103
OFTY01000119
[OFTY] sludge metagenome; sludge
687
762
+
Ala
TGC
[ENA]
¢þ
>WENV182648288
OJMF01023639
[OJMF] metagenome; surface
737
662
-
Ala
TGC
[ENA]
¢þ
>WENV183732642
PJTX01004506
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
354
429
+
Ala
TGC
[ENA]
¢þ
>ENV08002162
ABOL01376237
mosquito metagenome; viral fraction from mixed species mosquitoes collected in Mission Valley in San Diego, CA
101
26
-
Ala
TGC
[ENA]
¡û
>W141462326
JFHR01000107
Alphaproteobacteria
Sphingobium chlorophenolicum [JFHR]
3562
3487
-
Ala
TGC
[ENA]
¡û
>C191185540
CP041016
Alphaproteobacteria
Sphingobium fuliginis ATCC 27551 [CP041016, CP041017]
3312950
3313025
+
Ala
TGC
-
¡û
>C191185576
CP041017
Alphaproteobacteria
Sphingobium fuliginis ATCC 27551 [CP041016, CP041017]
614234
614309
+
Ala
TGC
-
¡û
>C191185578
CP041017
Alphaproteobacteria
Sphingobium fuliginis ATCC 27551 [CP041016, CP041017]
1056991
1056916
-
Ala
TGC
-
¡û
>W141807775
JPOU01000072
Alphaproteobacteria
Sphingobium yanoikuyae [JPOU]
1045
1120
+
Ala
TGC
[ENA]
¡û
>W1910199211
FBVU01000093
Alphaproteobacteria
Sphingobium sp. Z007 [FBVU]
265
190
-
Ala
TGC
[ENA]
¡û
>W1910199213
FBVU01000096
Alphaproteobacteria
Sphingobium sp. Z007 [FBVU]
303
378
+
Ala
TGC
[ENA]
¡û
>W1910199263
FBVV01000082
Alphaproteobacteria
Sphingobium sp. Z007 [FBVV]
346
271
-
Ala
TGC
[ENA]
¡û
>W1910199265
FBVV01000092
Alphaproteobacteria
Sphingobium sp. Z007 [FBVV]
269
344
+
Ala
TGC
[ENA]
¡û
>W1810000445
BEWI01000030
Alphaproteobacteria
Sphingobium fuliginis OMI [BEWI]
1034201
1034276
+
Ala
TGC
[ENA]
¡û
>W1810000487
BEWI01000032
Alphaproteobacteria
Sphingobium fuliginis OMI [BEWI]
1590121
1590046
-
Ala
TGC
[ENA]
¡û
>W1510756931
JACT01000001
Alphaproteobacteria
Sphingobium cupriresistens LL01 [JACT]
1998
2073
+
Ala
TGC
[ENA]
¡û
>W1510756970
JACT01000002
Alphaproteobacteria
Sphingobium cupriresistens LL01 [JACT]
454214
454139
-
Ala
TGC
[ENA]
¡û
>W1510756981
JACT01000003
Alphaproteobacteria
Sphingobium cupriresistens LL01 [JACT]
3773
3698
-
Ala
TGC
[ENA]
¡û
>W1510756987
JACT01000004
Alphaproteobacteria
Sphingobium cupriresistens LL01 [JACT]
458989
459064
+
Ala
TGC
[ENA]
¡û
>W1510756991
JACT01000005
Alphaproteobacteria
Sphingobium cupriresistens LL01 [JACT]
1998
2073
+
Ala
TGC
[ENA]
¡û
>W1510756994
JACT01000007
Alphaproteobacteria
Sphingobium cupriresistens LL01 [JACT]
182162
182237
+
Ala
TGC
[ENA]
¡û
>W1510756997
JACT01000007
Alphaproteobacteria
Sphingobium cupriresistens LL01 [JACT]
3773
3698
-
Ala
TGC
[ENA]
¡û
>W1511511982
JXTP01000100
Alphaproteobacteria
Sphingomonas melonis 30a [JXTP]
2005
2080
+
Ala
TGC
[ENA]
¡û
>C161054524
CP013264
Alphaproteobacteria
Sphingobium baderi DE-13 [CP013264]
789063
789138
+
Ala
TGC
[Ensembl]
¡û
>C161054531
CP013264
Alphaproteobacteria
Sphingobium baderi DE-13 [CP013264]
1380443
1380518
+
Ala
TGC
[Ensembl]
¡û
>W1610072043
BCUN01000076
Alphaproteobacteria
Sphingobium amiense NBRC 102518 [BCUN]
3635
3560
-
Ala
TGC
[ENA]
¡û
>W1610852623
LQCK02000044
Alphaproteobacteria
Sphingomonas melonis TY [LQCK]
332
257
-
Ala
TGC
[ENA]
¡û
>W1710069245
BCUN01000076
Alphaproteobacteria
Sphingobium amiense NBRC 102518 [BCUN]
3635
3560
-
Ala
TGC
[ENA]
¡û
>W1710543484
FNZZ01000011
Alphaproteobacteria
Sphingomonas palmae JS21-1 [FNZZ]
2637
2562
-
Ala
TGC
[ENA]
¡û
>W1710546440
FOCF01000004
Alphaproteobacteria
Sphingomonas gellani S6-262 [FOCF]
2178
2253
+
Ala
TGC
[ENA]
¡û
>W1710546458
FOCF01000019
Alphaproteobacteria
Sphingomonas gellani S6-262 [FOCF]
7966
7891
-
Ala
TGC
[ENA]
¡û
>W1710575568
FOZG01000002
Alphaproteobacteria
Sphingomonas jatrophae S5-249 [FOZG]
1320052
1320127
+
Ala
TGC
[ENA]
¡û
>W1710575586
FOZG01000004
Alphaproteobacteria
Sphingomonas jatrophae S5-249 [FOZG]
926
851
-
Ala
TGC
[ENA]
¡û
>W1710592189
FRCG01000028
Alphaproteobacteria
Sphingobium sp. YR657 [FRCG]
1872
1947
+
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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