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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.284829 (72 seq.)
>W1710862429
LMEJ01000010
Alphaproteobacteria
Sphingomonas sp. Root1294 [LMEJ]
106440
106365
-
Phe
GAA
[ENA]
¡û
>W1710863930
LMFM01000014
Alphaproteobacteria
Sphingomonas sp. Root50 [LMFM]
225898
225973
+
Phe
GAA
[ENA]
¡û
>W1710867191
LMIB01000015
Alphaproteobacteria
Sphingomonas sp. Root710 [LMIB]
143771
143696
-
Phe
GAA
[ENA]
¡û
>W1710867300
LMID01000014
Alphaproteobacteria
Sphingomonas sp. Root720 [LMID]
199241
199316
+
Phe
GAA
[ENA]
¡û
>W1710869771
LMJZ01000010
Alphaproteobacteria
Sphingomonas sp. Leaf5 [LMJZ]
56326
56251
-
Phe
GAA
[ENA]
¡û
>W1710870039
LMKE01000033
Alphaproteobacteria
Sphingomonas sp. Leaf10 [LMKE]
31770
31695
-
Phe
GAA
[ENA]
¡û
>W1710870542
LMKP01000011
Alphaproteobacteria
Sphingomonas sp. Leaf22 [LMKP]
12019
12094
+
Phe
GAA
[ENA]
¡û
>W1710870673
LMKS01000001
Alphaproteobacteria
Sphingomonas sp. Leaf24 [LMKS]
829194
829119
-
Phe
GAA
[ENA]
¡û
>W1710871845
LMLN01000013
Alphaproteobacteria
Sphingomonas sp. Leaf62 [LMLN]
199970
200045
+
Phe
GAA
[ENA]
¡û
>W1710871948
LMLP01000021
Alphaproteobacteria
Sphingomonas sp. Leaf67 [LMLP]
513649
513724
+
Phe
GAA
[ENA]
¡û
>W1710872978
LMMK01000044
Alphaproteobacteria
Methylobacterium sp. Leaf88 [LMMK]
14357
14432
+
Phe
GAA
[ENA]
¡û
>W1710872991
LMML01000006
Alphaproteobacteria
Methylobacterium sp. Leaf89 [LMML]
1748
1823
+
Phe
GAA
[ENA]
¡û
>W1710873096
LMMN01000012
Alphaproteobacteria
Methylobacterium sp. Leaf90 [LMMN]
103025
102950
-
Phe
GAA
[ENA]
¡û
>W1710873223
LMMQ01000008
Alphaproteobacteria
Methylobacterium sp. Leaf92 [LMMQ]
489216
489141
-
Phe
GAA
[ENA]
¡û
>W1710873440
LMMU01000001
Alphaproteobacteria
Methylobacterium sp. Leaf99 [LMMU]
1610442
1610517
+
Phe
GAA
[ENA]
¡û
>W1710877801
LMQK01000023
Alphaproteobacteria
Methylobacterium sp. Leaf399 [LMQK]
132351
132426
+
Phe
GAA
[ENA]
¡û
>W1710878528
LMRA01000011
Alphaproteobacteria
Methylobacterium sp. Leaf465 [LMRA]
59554
59479
-
Phe
GAA
[ENA]
¡û
>W1710878619
LMRC01000012
Alphaproteobacteria
Methylobacterium sp. Leaf466 [LMRC]
132325
132400
+
Phe
GAA
[ENA]
¡û
>W1710879199
LMRM01000029
Alphaproteobacteria
Methylobacterium sp. Leaf94 [LMRM]
5556
5631
+
Phe
GAA
[ENA]
¡û
>W1710882973
LMVG01000001
Alphaproteobacteria
Pelagerythrobacter marensis [LMVG]
908302
908377
+
Phe
GAA
[ENA]
¡û
>W1711075242
LSKG01000003
Alphaproteobacteria
Sphingomonas sp. CCH15-F11 [LSKG]
3954
3879
-
Phe
GAA
[ENA]
¡û
>W1711571757
MNAO01000150
Alphaproteobacteria
Methylorubrum extorquens [MNAO]
8160
8235
+
Phe
GAA
[ENA]
¡û
>W1711942735
NBBJ01000003
Alphaproteobacteria
Sphingomonas mucosissima [NBBJ]
213411
213486
+
Phe
GAA
[ENA]
¡û
>C171117080
CP021181
Alphaproteobacteria
Rhizorhabdus wittichii DC-6 [CP021181]
746365
746290
-
Phe
GAA
-
¡û
>W131196579
ASTM01000012
Alphaproteobacteria
Sphingomonas sp. YL-JM2C [ASTM]
284
359
+
Phe
GAA
[ENA]
¡û
>C024966
CP000699
Alphaproteobacteria
Rhizorhabdus wittichii RW1 [CP000699]
4517782
4517857
+
Phe
GAA
[Ensembl]
¡û
>WENV181234009
OFET01000756
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
77
2
-
Phe
GAA
[ENA]
¢þ
>WENV181234377
OFEU01000078
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
88553
88478
-
Phe
GAA
[ENA]
¢þ
>W08002398
ABEX01000005
Alphaproteobacteria
Methylorubrum extorquens CM4 [ABEX]
20568
20643
+
Phe
GAA
[ENA]
¡û
>WENV170991018
MWWA01094167
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
196
271
+
Phe
GAA
[ENA]
¢þ
>WENV170994301
MWWD01065331
[MWWD] soil metagenome; MS2-2 sample; Antarctic (ecotone) soil
169
94
-
Phe
GAA
[ENA]
¢þ
>C181081596
CP023449
Alphaproteobacteria
Rhizorhabdus dicambivorans Ndbn-20 [CP023449]
1406768
1406843
+
Phe
GAA
-
¡û
>C181227837
LT962688
Alphaproteobacteria
Methylorubrum extorquens TK 0001 [LT962688]
2947999
2948074
+
Phe
GAA
-
¡û
>W09106503
AAVK01000002
Alphaproteobacteria
Rhizorhabdus wittichii RW1 [AAVK]
386322
386397
+
Phe
GAA
[ENA]
¡û
>W09106846
ABEC01000002
Alphaproteobacteria
Methylorubrum extorquens PA1 [ABEC]
15642
15567
-
Phe
GAA
[ENA]
¡û
>W141713946
JMUB01000032
Alphaproteobacteria
Rhizorhabdus wittichii DC-6 [JMUB]
348
423
+
Phe
GAA
[ENA]
¡û
>W1911411144
NWUF01000007
Alphaproteobacteria
Rhizorhabdus dicambivorans Ndbn-20m [NWUF]
137453
137378
-
Phe
GAA
[ENA]
¡û
>W1810057225
PDHT01000070
Alphaproteobacteria
Methylobacterium sp. V23 [PDHT]
8228
8303
+
Phe
GAA
[ENA]
¡û
>SRA1003740
SRR002327.156258
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
168
243
+
Phe
GAA
[SRA]
>W1810672705
QJTP01000004
Alphaproteobacteria
Methylobacterium sp. GV094 [QJTP]
243107
243032
-
Phe
GAA
[ENA]
¡û
>W1810725217
QOCK01000001
Alphaproteobacteria
'Sphingomonas ginsengisoli' Hoang et al. 2012 KCTC 12630 [QOCK]
1147539
1147614
+
Phe
GAA
[ENA]
¡û
>SRA1014505
SRR023845.169933
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
168
93
-
Phe
GAA
[SRA]
>SRA1015632
SRR023846.138596
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
167
92
-
Phe
GAA
[SRA]
>SRA1015807
SRR023846.207793
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
167
92
-
Phe
GAA
[SRA]
>SRA1016419
SRR023846.488727
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
167
92
-
Phe
GAA
[SRA]
>C151086713
CP011805
Alphaproteobacteria
Pelagerythrobacter marensis KCTC 22370 [CP011805]
1186906
1186981
+
Phe
GAA
[Ensembl]
¡û
>W121034431
AHKO01000338
Alphaproteobacteria
Rhizorhabdus wittichii DP58 [AHKO]
256
331
+
Phe
GAA
[ENA]
¡û
>W121010671
AGJK01000057
Alphaproteobacteria
Methylorubrum extorquens DSM 13060 [AGJK]
17575
17650
+
Phe
GAA
[ENA]
¡û
>W1610679911
LKKO01000047
Alphaproteobacteria
Methylobacterium sp. GXS13 [LKKO]
8341
8266
-
Phe
GAA
[ENA]
¡û
>W1610724775
LMEJ01000010
Alphaproteobacteria
Sphingomonas sp. Root1294 [LMEJ]
106440
106365
-
Phe
GAA
[ENA]
¡û
>W1610726276
LMFM01000014
Alphaproteobacteria
Sphingomonas sp. Root50 [LMFM]
225898
225973
+
Phe
GAA
[ENA]
¡û
>W1610729537
LMIB01000015
Alphaproteobacteria
Sphingomonas sp. Root710 [LMIB]
143771
143696
-
Phe
GAA
[ENA]
¡û
>W1610729646
LMID01000014
Alphaproteobacteria
Sphingomonas sp. Root720 [LMID]
199241
199316
+
Phe
GAA
[ENA]
¡û
>W1610732117
LMJZ01000010
Alphaproteobacteria
Sphingomonas sp. Leaf5 [LMJZ]
56326
56251
-
Phe
GAA
[ENA]
¡û
>W1610732385
LMKE01000033
Alphaproteobacteria
Sphingomonas sp. Leaf10 [LMKE]
31770
31695
-
Phe
GAA
[ENA]
¡û
>W1610732888
LMKP01000011
Alphaproteobacteria
Sphingomonas sp. Leaf22 [LMKP]
12019
12094
+
Phe
GAA
[ENA]
¡û
>W1610733019
LMKS01000001
Alphaproteobacteria
Sphingomonas sp. Leaf24 [LMKS]
829194
829119
-
Phe
GAA
[ENA]
¡û
>W1610734191
LMLN01000013
Alphaproteobacteria
Sphingomonas sp. Leaf62 [LMLN]
199970
200045
+
Phe
GAA
[ENA]
¡û
>W1610734294
LMLP01000021
Alphaproteobacteria
Sphingomonas sp. Leaf67 [LMLP]
513649
513724
+
Phe
GAA
[ENA]
¡û
>W1610735324
LMMK01000044
Alphaproteobacteria
Methylobacterium sp. Leaf88 [LMMK]
14357
14432
+
Phe
GAA
[ENA]
¡û
>W1610735337
LMML01000006
Alphaproteobacteria
Methylobacterium sp. Leaf89 [LMML]
1748
1823
+
Phe
GAA
[ENA]
¡û
>W1610735442
LMMN01000012
Alphaproteobacteria
Methylobacterium sp. Leaf90 [LMMN]
103025
102950
-
Phe
GAA
[ENA]
¡û
>W1610735569
LMMQ01000008
Alphaproteobacteria
Methylobacterium sp. Leaf92 [LMMQ]
489216
489141
-
Phe
GAA
[ENA]
¡û
>W1610735786
LMMU01000001
Alphaproteobacteria
Methylobacterium sp. Leaf99 [LMMU]
1610442
1610517
+
Phe
GAA
[ENA]
¡û
>W1610736841
LMNQ01000039
Alphaproteobacteria
Methylobacterium sp. Leaf122 [LMNQ]
22533
22458
-
Phe
GAA
[ENA]
¡û
>W1610740147
LMQK01000023
Alphaproteobacteria
Methylobacterium sp. Leaf399 [LMQK]
132351
132426
+
Phe
GAA
[ENA]
¡û
>W1610740965
LMRC01000012
Alphaproteobacteria
Methylobacterium sp. Leaf466 [LMRC]
132325
132400
+
Phe
GAA
[ENA]
¡û
>W1610741545
LMRM01000029
Alphaproteobacteria
Methylobacterium sp. Leaf94 [LMRM]
5556
5631
+
Phe
GAA
[ENA]
¡û
>W1610744899
LMVG01000001
Alphaproteobacteria
Pelagerythrobacter marensis [LMVG]
908302
908377
+
Phe
GAA
[ENA]
¡û
>W1710563192
FOPM01000017
Alphaproteobacteria
Methylobacterium gossipiicola [FOPM]
68349
68424
+
Phe
GAA
[ENA]
¡û
>W1710609188
FXWG01000001
Alphaproteobacteria
Altererythrobacter xiamenensis [FXWG]
406375
406450
+
Phe
GAA
[ENA]
¡û
>W1710743457
LGVA01000004
Alphaproteobacteria
Sphingomonas sp. Ndbn-20 [LGVA]
137379
137304
-
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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