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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.284938 (126 seq.)
>W1710925697
LODL01000021
Betaproteobacteria
Dechloromonas denitrificans [LODL]
110116
110041
-
Lys
TTT
[ENA]
¡û
>W1710934481
LOJI01000040
Betaproteobacteria
Polynucleobacter yangtzensis [LOJI]
70876
70951
+
Lys
TTT
[ENA]
¡û
>W1710934516
LOJJ01000005
Betaproteobacteria
Polynucleobacter sinensis [LOJJ]
14980
14905
-
Lys
TTT
[ENA]
¡û
>W1711147360
LVJO01000001
Betaproteobacteria
Polynucleobacter asymbioticus [LVJO]
580523
580448
-
Lys
TTT
[ENA]
¡û
>W1711149069
LVLD01000007
Betaproteobacteria
Polynucleobacter asymbioticus P1-KOL8 [LVLD]
238188
238113
-
Lys
TTT
[ENA]
¡û
>W1711149105
LVLE01000005
Betaproteobacteria
Polynucleobacter asymbioticus [LVLE]
253943
253868
-
Lys
TTT
[ENA]
¡û
>W1711149142
LVLF01000005
Betaproteobacteria
Polynucleobacter asymbioticus [LVLF]
15075
15000
-
Lys
TTT
[ENA]
¡û
>W1711149179
LVLG01000001
Betaproteobacteria
Polynucleobacter asymbioticus [LVLG]
685304
685229
-
Lys
TTT
[ENA]
¡û
>W1711272444
LZFI01000012
Betaproteobacteria
Polynucleobacter sp. MWH-Adler-W8 [LZFI]
24284
24359
+
Lys
TTT
[ENA]
¡û
>W1711281995
LZMQ01000003
Betaproteobacteria
Polynucleobacter sp. QLW-P1DATA-2 [LZMQ]
1058233
1058158
-
Lys
TTT
[ENA]
¡û
>W1711282028
LZMR01000002
Betaproteobacteria
Polynucleobacter sp. MWH-Tro8-2-5-gr [LZMR]
526485
526410
-
Lys
TTT
[ENA]
¡û
>W1711301921
MAIK01000623
Betaproteobacteria
Polynucleobacter necessarius [MAIK]
310
235
-
Lys
TTT
[ENA]
¡û
>W1711421596
MHZG01000004
Betaproteobacteria
Polynucleobacter sp. GWA2_45_21 [MHZG]
14438
14363
-
Lys
TTT
[ENA]
¡û
>W1711423794
MIDJ01000058
Betaproteobacteria
Thiobacillus sp. GWE1_62_9 [MIDJ]
1397
1322
-
Lys
TTT
[ENA]
¡û
>W1711504176
MKUH01000021
Betaproteobacteria
Candidatus Accumulibacter sp. 66-26 [MKUH]
80334
80259
-
Lys
TTT
[ENA]
¡û
>W1711625789
MPIY01000012
Betaproteobacteria
Polynucleobacter sphagniphilus MWH-Weng1-1 [MPIY]
4753
4828
+
Lys
TTT
[ENA]
¡û
>W1711718042
MTHD01000001
Betaproteobacteria
Azonexus hydrophilus [MTHD]
327215
327140
-
Lys
TTT
[ENA]
¡û
>W1711932796
NAIA01000001
Betaproteobacteria
Polynucleobacter hirudinilacicola MWH-EgelM1-30-B4 [NAIA]
85439
85364
-
Lys
TTT
[ENA]
¡û
>W1712077019
NGUO01000004
Betaproteobacteria
Polynucleobacter aenigmaticus MWH-K35W1 [NGUO]
153291
153366
+
Lys
TTT
[ENA]
¡û
>W1712077047
NGUP01000001
Betaproteobacteria
Polynucleobacter campilacus MWH-Feld-100 [NGUP]
485975
486050
+
Lys
TTT
[ENA]
¡û
>C171035134
CP015016
Betaproteobacteria
Polynucleobacter asymbioticus MWH-RechtKolB [CP015016]
723073
722998
-
Lys
TTT
-
¡û
>C171035172
CP015017
Betaproteobacteria
Polynucleobacter asymbioticus MWH-RechtKol4 [CP015017]
722602
722527
-
Lys
TTT
-
¡û
>C171035210
CP015018
Betaproteobacteria
Polynucleobacter asymbioticus Tro8F10W22 [CP015018]
669654
669579
-
Lys
TTT
-
¡û
>W131215544
ATVC01000030
Betaproteobacteria
Aquaspirillum serpens DSM 68 [ATVC]
30670
30745
+
Lys
TTT
[ENA]
¡û
>W131220814
ATZV01000058
Betaproteobacteria
beta proteobacterium SCGC AAA027-C02 [ATZV]
42900
42975
+
Lys
TTT
[ENA]
¡û
>W131223581
AUCE01000011
Betaproteobacteria
Azonexus hydrophilus DSM 23864 [AUCE]
578219
578144
-
Lys
TTT
[ENA]
¡û
>W131223753
AUCH01000008
Betaproteobacteria
Azovibrio restrictus DSM 23866 [AUCH]
125352
125427
+
Lys
TTT
[ENA]
¡û
>C017401
CP000655
Betaproteobacteria
Polynucleobacter asymbioticus QLW-P1DMWA-1 [CP000655]
580523
580448
-
Lys
TTT
[Ensembl]
¡û
>WENV180038573
FZPZ01000158
[FZPZ] metagenome; underground water
20846
20921
+
Lys
TTT
[ENA]
¢þ
>WENV180099668
NMRC01022289
[NMRC] plant metagenome; fluid collected inside the plant's pitcher
641
566
-
Lys
TTT
[ENA]
¢þ
>WENV180110948
OAPN01015458
[OAPN] marine metagenome; 2011
484
559
+
Lys
TTT
[ENA]
¢þ
>WENV180257362
OBEQ010901808
[OBEQ] groundwater metagenome; groundwater
839
913
+
Lys
TTT
[ENA]
¢þ
>WENV180391180
OBPM01029473
[OBPM] marine metagenome; ENVO:00002010
110
35
-
Lys
TTT
[ENA]
¢þ
>WENV181145021
OEHO01165538
[OEHO] metagenome; unknown
185
110
-
Lys
TTT
[ENA]
¢þ
>WENV181189752
OEOF01200631
[OEOF] activated sludge metagenome; Activated Sludge
177
102
-
Lys
TTT
[ENA]
¢þ
>WENV181221670
OFCW01000542
[OFCW] microbial mat metagenome; Microbial Mat
5141
5216
+
Lys
TTT
[ENA]
¢þ
>WENV181231721
OFEK01055163
[OFEK] activated sludge metagenome; Anaerobic digester
216
291
+
Lys
TTT
[ENA]
¢þ
>WENV181367647
OFQC01000374
[OFQC] freshwater metagenome; Freshwater Lake
103
178
+
Lys
TTT
[ENA]
¢þ
>WENV181368267
OFQL01000056
[OFQL] freshwater metagenome; Freshwater Lake
13151
13226
+
Lys
TTT
[ENA]
¢þ
>WENV181368830
OFQN01001200
[OFQN] freshwater metagenome; Freshwater Lake
1285
1360
+
Lys
TTT
[ENA]
¢þ
>WENV181368956
OFQN01005665
[OFQN] freshwater metagenome; Freshwater Lake
81
6
-
Lys
TTT
[ENA]
¢þ
>WENV181369177
OFQO01006753
[OFQO] freshwater metagenome; Freshwater Lake
112
187
+
Lys
TTT
[ENA]
¢þ
>WENV181369337
OFQP01000425
[OFQP] freshwater metagenome; Freshwater Lake
5133
5208
+
Lys
TTT
[ENA]
¢þ
>WENV181369919
OFQR01002416
[OFQR] freshwater metagenome; Freshwater Lake
129
54
-
Lys
TTT
[ENA]
¢þ
>WENV181370154
OFQS01000155
[OFQS] freshwater metagenome; Freshwater Lake
1293
1368
+
Lys
TTT
[ENA]
¢þ
>WENV181377654
OFRA01022746
[OFRA] wastewater metagenome; Lake Maggiore Verbania
784
709
-
Lys
TTT
[ENA]
¢þ
>WENV181379331
OFRD01000549
[OFRD] wastewater metagenome; Exp Tend CN 100WW
10582
10657
+
Lys
TTT
[ENA]
¢þ
>WENV181384270
OFRH01049523
[OFRH] wastewater metagenome; Exp Tend NO 100WW
143
218
+
Lys
TTT
[ENA]
¢þ
>WENV181395626
OFSB01000066
[OFSB] freshwater metagenome; Freshwater Lake
7360
7285
-
Lys
TTT
[ENA]
¢þ
>WENV181400034
OFSF01000976
[OFSF] wastewater metagenome; Exp Tend VB 100WW
1132
1057
-
Lys
TTT
[ENA]
¢þ
>WENV181414650
OGCL01000944
[OGCL] hot springs metagenome; Hot spring water
13574
13649
+
Lys
TTT
[ENA]
¢þ
>WENV181836342
OGVJ01004725
[OGVJ] freshwater metagenome; freshwater
145
70
-
Lys
TTT
[ENA]
¢þ
>WENV181836858
OGVJ01040774
[OGVJ] freshwater metagenome; freshwater
120
195
+
Lys
TTT
[ENA]
¢þ
>WENV181838379
OGVN01000058
[OGVN] freshwater metagenome; freshwater
12101
12026
-
Lys
TTT
[ENA]
¢þ
>WENV181838381
OGVN01000082
[OGVN] freshwater metagenome; freshwater
77
2
-
Lys
TTT
[ENA]
¢þ
>WENV181838526
OGVN01002166
[OGVN] freshwater metagenome; freshwater
51
126
+
Lys
TTT
[ENA]
¢þ
>WENV181843097
OGVU01000655
[OGVU] freshwater metagenome; freshwater
525
600
+
Lys
TTT
[ENA]
¢þ
>WENV181843999
OGVV01002808
[OGVV] freshwater metagenome; freshwater
497
572
+
Lys
TTT
[ENA]
¢þ
>W141277618
JAET01000001
Betaproteobacteria
Dechloromonas agitata is5 [JAET]
665908
665983
+
Lys
TTT
[ENA]
¡û
>WENV183678504
ORJL011885639
[ORJL] groundwater metagenome; groundwater
9831
9756
-
Lys
TTT
[ENA]
¢þ
>WENV183681527
ORMF010321020
[ORMF] groundwater metagenome; groundwater
122443
122368
-
Lys
TTT
[ENA]
¢þ
>WENV183694999
ORMF012317113
[ORMF] groundwater metagenome; groundwater
2767
2692
-
Lys
TTT
[ENA]
¢þ
>WENV183725967
PJQF01050385
[PJQF] biofilm metagenome; biomolecule (vanillin) treated reverse osmosis membrane biofilm
273
348
+
Lys
TTT
[ENA]
¢þ
>WENV170010154
APMI01009839
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
209
134
-
Lys
TTT
[ENA]
¢þ
>WENV170010520
APMI01019314
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
648
723
+
Lys
TTT
[ENA]
¢þ
>WENV170010609
APMI01022452
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
6042
6117
+
Lys
TTT
[ENA]
¢þ
>WENV170553510
CXWK01021541
[CXWK] wastewater metagenome; activated sludge
945
870
-
Lys
TTT
[ENA]
¢þ
>WENV170556611
CXWL01011226
[CXWL] groundwater metagenome; biofilm material
50699
50624
-
Lys
TTT
[ENA]
¢þ
>WENV170559123
CXWL01111075
[CXWL] groundwater metagenome; biofilm material
2153
2078
-
Lys
TTT
[ENA]
¢þ
>WENV170559207
CXWL01114549
[CXWL] groundwater metagenome; biofilm material
525
450
-
Lys
TTT
[ENA]
¢þ
>WENV170573171
FLYJ01002536
[FLYJ] hot springs metagenome; Sediment
575
650
+
Lys
TTT
[ENA]
¢þ
>WENV170600581
FUWD010133496
[FUWD] metagenome; unknown
201
126
-
Lys
TTT
[ENA]
¢þ
>WENV170602744
FUWD010261413
[FUWD] metagenome; unknown
480
405
-
Lys
TTT
[ENA]
¢þ
>WENV170616170
FUWD012880194
[FUWD] metagenome; unknown
148
73
-
Lys
TTT
[ENA]
¢þ
>WENV170619649
FUWD013018524
[FUWD] metagenome; unknown
4317
4242
-
Lys
TTT
[ENA]
¢þ
>WENV170624255
FUWD013178581
[FUWD] metagenome; unknown
85
10
-
Lys
TTT
[ENA]
¢þ
>WENV170627757
FUWD013236974
[FUWD] metagenome; unknown
4317
4242
-
Lys
TTT
[ENA]
¢þ
>WENV170632533
FUWD013384090
[FUWD] metagenome; unknown
85
10
-
Lys
TTT
[ENA]
¢þ
>WENV170645757
JPYU01042329
[JPYU] wastewater metagenome; domestic wastewater sediment without any treatment
173
248
+
Lys
TTT
[ENA]
¢þ
>WENV170651739
JRYG01001242
[JRYG] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
15695
15770
+
Lys
TTT
[ENA]
¢þ
>WENV170653421
JRYJ01000531
[JRYJ] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
6321
6246
-
Lys
TTT
[ENA]
¢þ
>WENV170961335
MLJW01000008
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
260249
260174
-
Lys
TTT
[ENA]
¢þ
>WENV170961376
MLJW01000020
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
237115
237040
-
Lys
TTT
[ENA]
¢þ
>WENV170961451
MLJW01000047
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
116507
116582
+
Lys
TTT
[ENA]
¢þ
>C181078398
CP023276
Betaproteobacteria
Polynucleobacter difficilis AM-8B5 [CP023276]
489593
489518
-
Lys
TTT
-
¡û
>C181187704
CP030086
Betaproteobacteria
Polynucleobacter paneuropaeus MWH-Creno-4B4 [CP030086]
398717
398642
-
Lys
TTT
-
¡û
>C181218896
LT606946
Betaproteobacteria
Polynucleobacter necessarius [LT606946]
339044
338969
-
Lys
TTT
-
¡û
>C181218933
LT606947
Betaproteobacteria
Polynucleobacter necessarius [LT606947]
76073
75998
-
Lys
TTT
-
¡û
>C181218945
LT606949
Betaproteobacteria
Polynucleobacter necessarius [LT606949]
1161115
1161190
+
Lys
TTT
-
¡û
>C181218984
LT606950
Betaproteobacteria
Polynucleobacter necessarius [LT606950]
1037668
1037743
+
Lys
TTT
-
¡û
>C181219036
LT606951
Betaproteobacteria
Polynucleobacter necessarius [LT606951]
589455
589380
-
Lys
TTT
-
¡û
>C181219043
LT615227
Betaproteobacteria
Polynucleobacter necessarius [LT615227]
145222
145297
+
Lys
TTT
-
¡û
>C181219089
LT615228
Betaproteobacteria
Polynucleobacter necessarius [LT615228]
988558
988633
+
Lys
TTT
-
¡û
>W09106274
AAUC01000002
Betaproteobacteria
Polynucleobacter asymbioticus QLW-P1DMWA-1 [AAUC]
167797
167722
-
Lys
TTT
[ENA]
¡û
>W09134965
ACVF01000006
Betaproteobacteria
Sideroxydans lithotrophicus ES-1 [ACVF]
165867
165942
+
Lys
TTT
[ENA]
¡û
>W141817326
JQKP01000003
Betaproteobacteria
Ferriphaselus sp. R-1 [JQKP]
58633
58708
+
Lys
TTT
[ENA]
¡û
>C141003812
CP004348
Betaproteobacteria
beta proteobacterium CB [CP004348]
421847
421772
-
Lys
TTT
[Ensembl]
¡û
>W1910828073
MWUM01000012
Betaproteobacteria
Zoogloea sp. LCSB751 [MWUM]
55000
55075
+
Lys
TTT
[ENA]
¡û
>W1910888623
NERY01000002
Betaproteobacteria
Limnohabitans sp. MMS-10A-178 [NERY]
315931
315856
-
Lys
TTT
[ENA]
¡û
>W1910888850
NESE01000001
Betaproteobacteria
Limnohabitans sp. Hippo4 [NESE]
216651
216576
-
Lys
TTT
[ENA]
¡û
>W1910942176
NJGG01000001
Betaproteobacteria
Polynucleobacter cosmopolitanus MWH-MoIso2 [NJGG]
798863
798788
-
Lys
TTT
[ENA]
¡û
>W1911490761
OANS01000004
Betaproteobacteria
Polynucleobacter meluiroseus AP-Melu-1000-B4 [OANS]
82212
82137
-
Lys
TTT
[ENA]
¡û
>W1810005505
BFBP01000012
Betaproteobacteria
Azospira sp. I13 [BFBP]
10188
10263
+
Lys
TTT
[ENA]
¡û
>W1810102014
PGTX01000004
Betaproteobacteria
Polynucleobacter brandtiae UB-Domo-W1 [PGTX]
11728
11653
-
Lys
TTT
[ENA]
¡û
>W1810699161
QMCG01000001
Betaproteobacteria
Polynucleobacter paneuropaeus MWH-UK1W16 [QMCG]
756119
756044
-
Lys
TTT
[ENA]
¡û
>W1810699208
QMCH01000003
Betaproteobacteria
Polynucleobacter paneuropaeus FUKU-NW-11 [QMCH]
35897
35822
-
Lys
TTT
[ENA]
¡û
>C151000897
AP012547
Betaproteobacteria
Sulfuritalea hydrogenivorans sk43H DSM 22779 [AP012547]
354394
354469
+
Lys
TTT
[Ensembl]
¡û
>C151025667
CP007501
Betaproteobacteria
Polynucleobacter duraquae MWH-MoK4 [CP007501]
479715
479640
-
Lys
TTT
[Ensembl]
¡û
>C151071200
CP010554
Betaproteobacteria
Rugosibacter aromaticivorans Ca6 [CP010554]
2176556
2176631
+
Lys
TTT
[Ensembl]
¡û
>ENV09000047
ABSN01002188
Freshwater sediment metagenome lwFormaldehyde_C1
717
792
+
Lys
TTT
[ENA]
¡û
>C10111855
CP001965
Betaproteobacteria
Sideroxydans lithotrophicus ES-1 [CP001965]
528632
528707
+
Lys
TTT
[Ensembl]
¡û
>W1510720069
CXOM01000004
Betaproteobacteria
Limnohabitans sp. Rim11 [CXOM]
96003
96078
+
Lys
TTT
[ENA]
¡û
>W11114401
ADDK02000001
Betaproteobacteria
Azospira oryzae PS [ADDK]
1334555
1334480
-
Lys
TTT
[ENA]
¡û
>W1511348526
JRKM01000001
Betaproteobacteria
Aquabacterium sp. NJ1 [JRKM]
1141756
1141681
-
Lys
TTT
[ENA]
¡û
>WENV042843
AACY022269985
Marine microbial communities from Global Ocean Sampling (GOS)
134
59
-
Lys
TTT
[ENA]
>C121006972
CP003153
Betaproteobacteria
Azospira oryzae PS [CP003153]
551186
551111
-
Lys
TTT
[Ensembl]
¡û
>C161037570
CP011834
Betaproteobacteria
Limnohabitans sp. 103DPR2 [CP011834]
1751869
1751944
+
Lys
TTT
[Ensembl]
¡û
>C161092380
CP015922
Betaproteobacteria
Polynucleobacter wuianus QLW-P1FAT50C-4 [CP015922]
1454233
1454308
+
Lys
TTT
[Ensembl]
¡û
>WENV057227
AACY023288995
Marine microbial communities from Global Ocean Sampling (GOS)
159
236
+
Lys
TTT
[ENA]
>WENV057830
AACY023308063
Marine microbial communities from Global Ocean Sampling (GOS)
66
143
+
Lys
TTT
[ENA]
>W1610617583
LGUD01000001
Betaproteobacteria
Rhodocyclaceae bacterium Paddy-1 [LGUD]
193262
193187
-
Lys
TTT
[ENA]
¡û
>W1610783343
LODL01000021
Betaproteobacteria
Dechloromonas denitrificans [LODL]
110116
110041
-
Lys
TTT
[ENA]
¡û
>W1610792012
LOJI01000040
Betaproteobacteria
Polynucleobacter yangtzensis [LOJI]
70876
70951
+
Lys
TTT
[ENA]
¡û
>W1610792047
LOJJ01000005
Betaproteobacteria
Polynucleobacter sinensis [LOJJ]
14980
14905
-
Lys
TTT
[ENA]
¡û
>W1611052761
MAIK01000623
Betaproteobacteria
Polynucleobacter necessarius [MAIK]
310
235
-
Lys
TTT
[ENA]
¡û
>W1710743133
LGUD01000001
Betaproteobacteria
Rhodocyclaceae bacterium Paddy-1 [LGUD]
193262
193187
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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