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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.284990 (41 seq.)
>W1711262861
LYYE01000050
Gammaproteobacteria
Klebsiella pneumoniae [LYYE]
270
195
-
Thr
TGT
[ENA]
¡û
>W1711283213
LZPA01000832
Gammaproteobacteria
Klebsiella pneumoniae [LZPA]
41908
41983
+
Thr
TGT
[ENA]
¡û
>W1711326795
MBFY01000156
Gammaproteobacteria
Klebsiella pneumoniae [MBFY]
1807
1882
+
Thr
TGT
[ENA]
¡û
>W1711334145
MBQC01000065
Gammaproteobacteria
Klebsiella pneumoniae [MBQC]
41916
41991
+
Thr
TGT
[ENA]
¡û
>W1711511082
MLCD01000029
Gammaproteobacteria
Klebsiella pneumoniae [MLCD]
41776
41851
+
Thr
TGT
[ENA]
¡û
>C171051487
CP016814
Gammaproteobacteria
Klebsiella pneumoniae ED23 [CP016814]
3871614
3871539
-
Thr
TGT
-
¡û
>C171088806
CP019047
Gammaproteobacteria
Klebsiella pneumoniae subsp. pneumoniae RJA166 [CP019047]
1435744
1435819
+
Thr
TGT
-
¡û
>WENV181328451
OFLU01000006
[OFLU] metagenome; faeces
210443
210368
-
Thr
TGT
[ENA]
¢þ
>WENV181328763
OFLV01000005
[OFLV] metagenome; faeces
272430
272505
+
Thr
TGT
[ENA]
¢þ
>WENV181633298
OGMV01000124
[OGMV] metagenome; Human gut stool
43790
43715
-
Thr
TGT
[ENA]
¢þ
>WENV170002002
AGFT01067016
[AGFT] ant fungus garden metagenome; Atta colombica fungus garden bottom
296
371
+
Thr
TGT
[ENA]
¢þ
>PHG181003830
KY271399
Siphoviridae
Klebsiella phage 5 LV-2017 (KY271399)
20623
20698
+
Thr
TGT
[ENA]
¡û
>C181112772
CP025080
Gammaproteobacteria
Klebsiella pneumoniae SGH10 [CP025080]
2138618
2138693
+
Thr
TGT
-
¡û
>C191118802
CP034082
Gammaproteobacteria
Klebsiella pneumoniae subsp. pneumoniae R210-2 [CP034082]
1465258
1465333
+
Thr
TGT
-
¡û
>C191202799
LR134254
Gammaproteobacteria
Klebsiella aerogenes NCTC9644 [LR134254]
1470036
1470111
+
Thr
TGT
-
¡û
>C191202807
LR134254
Gammaproteobacteria
Klebsiella aerogenes NCTC9644 [LR134254]
3419298
3419373
+
Thr
TGT
-
¡û
>W1910459672
FWOB01000008
Gammaproteobacteria
Klebsiella pneumoniae VRCO0167 [FWOB]
26352
26277
-
Thr
TGT
[ENA]
¡û
>W1910459723
FWOC01000005
Gammaproteobacteria
Klebsiella pneumoniae VRCO0170 [FWOC]
214821
214896
+
Thr
TGT
[ENA]
¡û
>W1910459807
FWOD01000004
Gammaproteobacteria
Klebsiella pneumoniae VRCO0169 [FWOD]
109444
109369
-
Thr
TGT
[ENA]
¡û
>W1910459897
FWOE01000008
Gammaproteobacteria
Klebsiella pneumoniae VRCO0177 [FWOE]
27816
27741
-
Thr
TGT
[ENA]
¡û
>W1910459958
FWOF01000005
Gammaproteobacteria
Klebsiella pneumoniae VRCO0178 [FWOF]
26352
26277
-
Thr
TGT
[ENA]
¡û
>W1910460033
FWOG01000007
Gammaproteobacteria
Klebsiella pneumoniae VRCO0171 [FWOG]
26352
26277
-
Thr
TGT
[ENA]
¡û
>W1910460276
FWOJ01000005
Gammaproteobacteria
Klebsiella pneumoniae VRCO0172 [FWOJ]
109444
109369
-
Thr
TGT
[ENA]
¡û
>W1910460340
FWOK01000005
Gammaproteobacteria
Klebsiella pneumoniae VRCO0173 [FWOK]
26352
26277
-
Thr
TGT
[ENA]
¡û
>W1910460428
FWOL01000008
Gammaproteobacteria
Klebsiella pneumoniae VRCO0174 [FWOL]
28194
28119
-
Thr
TGT
[ENA]
¡û
>W1910460581
FWON01000007
Gammaproteobacteria
Klebsiella pneumoniae VRCO0175 [FWON]
26352
26277
-
Thr
TGT
[ENA]
¡û
>W1910460961
FWOS01000008
Gammaproteobacteria
Klebsiella pneumoniae VRCO0176 [FWOS]
26352
26277
-
Thr
TGT
[ENA]
¡û
>W1911396031
NWEN01000027
Gammaproteobacteria
Klebsiella pneumoniae subsp. ozaenae WCHKP030925 [NWEN]
26348
26273
-
Thr
TGT
[ENA]
¡û
>W1810339980
PUXF01000262
Gammaproteobacteria
Klebsiella pneumoniae [PUXF]
296
221
-
Thr
TGT
[ENA]
¡û
>W1810370415
PWAW01000007
Gammaproteobacteria
Klebsiella pneumoniae SCKP020018 [PWAW]
26262
26187
-
Thr
TGT
[ENA]
¡û
>W1810535842
QDDX01000002
Gammaproteobacteria
Klebsiella pneumoniae H3 [QDDX]
40264
40339
+
Thr
TGT
[ENA]
¡û
>W1810750915
QPAC01000001
Gammaproteobacteria
Klebsiella pneumoniae JHTS001 [QPAC]
5071269
5071344
+
Thr
TGT
[ENA]
¡û
>W1810750996
QPAD01000002
Gammaproteobacteria
Klebsiella pneumoniae JHTS002 [QPAD]
312357
312282
-
Thr
TGT
[ENA]
¡û
>W1810751187
QPAF01000004
Gammaproteobacteria
Klebsiella pneumoniae JHTS006 [QPAF]
312352
312277
-
Thr
TGT
[ENA]
¡û
>W1810751335
QPAG01000017
Gammaproteobacteria
Klebsiella pneumoniae JHTS007 [QPAG]
312235
312160
-
Thr
TGT
[ENA]
¡û
>W1810780264
QQOY01000004
Gammaproteobacteria
Klebsiella pneumoniae JHTS005 [QQOY]
248318
248243
-
Thr
TGT
[ENA]
¡û
>W1810836549
QSRX01000013
Gammaproteobacteria
Klebsiella pneumoniae TF06-6 [QSRX]
26282
26207
-
Thr
TGT
[ENA]
¡û
>WENV11102074
AGFT01067016
[AGFT] ant fungus garden metagenome; Atta colombica fungus garden bottom
296
371
+
Thr
TGT
[ENA]
¡û
>C161002470
AP014951
Gammaproteobacteria
Klebsiella oxytoca JKo3 [AP014951]
4168926
4168851
-
Thr
TGT
-
¡û
>W1610492997
FLFR01000017
Gammaproteobacteria
Klebsiella quasipneumoniae pneumoniae [FLFR]
65742
65667
-
Thr
TGT
[ENA]
¡û
>W1710486467
FLFR01000017
Gammaproteobacteria
Klebsiella quasipneumoniae pneumoniae [FLFR]
65742
65667
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK