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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.285019 (64 seq.)
>W1710785622
LJIA01000001
Betaproteobacteria
beta proteobacterium AAP99 [LJIA]
276549
276474
-
Arg
CCT
[ENA]
¡û
>W1711385336
MEEC01000016
Betaproteobacteria
Lautropia sp. SCN 70-15 [MEEC]
20236
20311
+
Arg
CCT
[ENA]
¡û
>W1711385366
MEED01000010
Betaproteobacteria
Lautropia sp. SCN 69-89 [MEED]
441
366
-
Arg
CCT
[ENA]
¡û
>WENV180297262
OBJA01017842
[OBJA] soil metagenome; sediment, water from around vicinity
1031
956
-
Arg
CCT
[ENA]
¢þ
>WENV180636064
OCRE01050922
[OCRE] marine metagenome; Seawater
117
192
+
Arg
CCT
[ENA]
¢þ
>WENV180637585
OCRG01053538
[OCRG] marine metagenome; seawater
402
327
-
Arg
CCT
[ENA]
¢þ
>WENV180717484
ODGE01000013
[ODGE] human metagenome; G_DNA_Buccal mucosa
69527
69602
+
Arg
CCT
[ENA]
¢þ
>WENV180733568
ODGZ01000229
[ODGZ] human metagenome; G_DNA_Supragingival plaque
6858
6933
+
Arg
CCT
[ENA]
¢þ
>WENV180736399
ODHB01039103
[ODHB] human metagenome; G_DNA_Supragingival plaque
48
123
+
Arg
CCT
[ENA]
¢þ
>WENV180739326
ODHD01034521
[ODHD] human metagenome; G_DNA_Supragingival plaque
217
292
+
Arg
CCT
[ENA]
¢þ
>WENV180754898
ODHU01002900
[ODHU] human metagenome; G_DNA_Supragingival plaque
3644
3569
-
Arg
CCT
[ENA]
¢þ
>WENV180778354
ODIM01003977
[ODIM] human metagenome; G_DNA_Supragingival plaque
2204
2129
-
Arg
CCT
[ENA]
¢þ
>WENV180796676
ODJB01009655
[ODJB] human metagenome; G_DNA_Supragingival plaque
367
442
+
Arg
CCT
[ENA]
¢þ
>WENV180801264
ODJD01016986
[ODJD] human metagenome; G_DNA_Supragingival plaque
402
477
+
Arg
CCT
[ENA]
¢þ
>WENV180842699
ODKM01145530
[ODKM] human metagenome; G_DNA_Buccal mucosa
20
95
+
Arg
CCT
[ENA]
¢þ
>WENV180881648
ODMA01021003
[ODMA] human metagenome; G_DNA_Supragingival plaque
137
62
-
Arg
CCT
[ENA]
¢þ
>WENV180913137
ODSR01039739
[ODSR] human metagenome; G_DNA_Buccal mucosa
205
130
-
Arg
CCT
[ENA]
¢þ
>WENV180922935
ODTJ01020171
[ODTJ] human metagenome; G_DNA_Supragingival plaque
1246
1171
-
Arg
CCT
[ENA]
¢þ
>WENV180923898
ODTK01000339
[ODTK] human metagenome; G_DNA_Supragingival plaque
31407
31332
-
Arg
CCT
[ENA]
¢þ
>WENV180927329
ODTM01000224
[ODTM] human metagenome; G_DNA_Supragingival plaque
14830
14905
+
Arg
CCT
[ENA]
¢þ
>WENV180937877
ODTX01000151
[ODTX] human metagenome; G_DNA_Supragingival plaque
45809
45884
+
Arg
CCT
[ENA]
¢þ
>WENV180938342
ODTX01001494
[ODTX] human metagenome; G_DNA_Supragingival plaque
10034
9959
-
Arg
CCT
[ENA]
¢þ
>WENV180963971
ODUO01000045
[ODUO] human metagenome; G_DNA_Supragingival plaque
53003
52928
-
Arg
CCT
[ENA]
¢þ
>WENV180964109
ODUO01000273
[ODUO] human metagenome; G_DNA_Supragingival plaque
20523
20448
-
Arg
CCT
[ENA]
¢þ
>WENV180972739
ODUW01000110
[ODUW] human metagenome; G_DNA_Supragingival plaque
46393
46468
+
Arg
CCT
[ENA]
¢þ
>WENV180978679
ODVA01001299
[ODVA] human metagenome; G_DNA_Buccal mucosa
1709
1784
+
Arg
CCT
[ENA]
¢þ
>WENV180986934
ODVK01002187
[ODVK] human metagenome; G_DNA_Supragingival plaque
4725
4650
-
Arg
CCT
[ENA]
¢þ
>WENV180989431
ODVL01192027
[ODVL] human metagenome; G_DNA_Tongue dorsum
201
126
-
Arg
CCT
[ENA]
¢þ
>WENV180999132
ODVT01006986
[ODVT] human metagenome; G_DNA_Buccal mucosa
3177
3102
-
Arg
CCT
[ENA]
¢þ
>WENV181006690
ODWA01098620
[ODWA] human metagenome; G_DNA_Buccal mucosa
217
142
-
Arg
CCT
[ENA]
¢þ
>WENV181029343
ODXF01000131
[ODXF] human metagenome; G_DNA_Supragingival plaque
7127
7202
+
Arg
CCT
[ENA]
¢þ
>WENV181066798
ODZI01001946
[ODZI] human metagenome; G_DNA_Supragingival plaque
5292
5217
-
Arg
CCT
[ENA]
¢þ
>WENV181069938
OEAE01000057
[OEAE] human metagenome; G_DNA_Supragingival plaque
80100
80175
+
Arg
CCT
[ENA]
¢þ
>WENV181070344
OEAE01000950
[OEAE] human metagenome; G_DNA_Supragingival plaque
11286
11211
-
Arg
CCT
[ENA]
¢þ
>WENV181070466
OEAE01001893
[OEAE] human metagenome; G_DNA_Supragingival plaque
5524
5449
-
Arg
CCT
[ENA]
¢þ
>WENV181075348
OEAO01138957
[OEAO] human metagenome; G_DNA_Tongue dorsum
141
216
+
Arg
CCT
[ENA]
¢þ
>WENV181079407
OEAS01005921
[OEAS] human metagenome; G_DNA_Supragingival plaque
5430
5355
-
Arg
CCT
[ENA]
¢þ
>WENV181090761
OEBC01003323
[OEBC] human metagenome; G_DNA_Supragingival plaque
4199
4124
-
Arg
CCT
[ENA]
¢þ
>WENV181101199
OECM01014479
[OECM] human metagenome; G_DNA_Buccal mucosa
154
79
-
Arg
CCT
[ENA]
¢þ
>WENV181106999
OEEI01001261
[OEEI] human metagenome; G_DNA_Supragingival plaque
5123
5198
+
Arg
CCT
[ENA]
¢þ
>WENV181121356
OEFL01002807
[OEFL] human metagenome; G_DNA_Supragingival plaque
4451
4376
-
Arg
CCT
[ENA]
¢þ
>WENV181146262
OEHQ01002384
[OEHQ] human metagenome; G_DNA_Supragingival plaque
5285
5210
-
Arg
CCT
[ENA]
¢þ
>WENV181158477
OEIH01001740
[OEIH] human metagenome; G_DNA_Supragingival plaque
2525
2600
+
Arg
CCT
[ENA]
¢þ
>WENV181166788
OEIU01002143
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
8236
8311
+
Arg
CCT
[ENA]
¢þ
>WENV181167177
OEIU01012417
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
1752
1677
-
Arg
CCT
[ENA]
¢þ
>WENV181177465
OEJS01002570
[OEJS] human metagenome; G_DNA_Supragingival plaque
3078
3003
-
Arg
CCT
[ENA]
¢þ
>WENV181177610
OEJS01007103
[OEJS] human metagenome; G_DNA_Supragingival plaque
1843
1768
-
Arg
CCT
[ENA]
¢þ
>WENV181178851
OEJT01000387
[OEJT] human metagenome; G_DNA_Supragingival plaque
20028
19953
-
Arg
CCT
[ENA]
¢þ
>WENV181180566
OEJU01000244
[OEJU] human metagenome; G_DNA_Supragingival plaque
20189
20114
-
Arg
CCT
[ENA]
¢þ
>WENV170150436
CEOC01124677
[CEOC] marine metagenome genome assembly TARA_036_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
285
210
-
Arg
CCT
[ENA]
¢þ
>WENV170166591
CEOO01080465
[CEOO] marine metagenome genome assembly TARA_036_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
285
210
-
Arg
CCT
[ENA]
¢þ
>WENV170653120
JRYI01004567
[JRYI] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 1 ppm DO
232
157
-
Arg
CCT
[ENA]
¢þ
>WENV170654710
JRYL01007742
[JRYL] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater from different
1088
1013
-
Arg
CCT
[ENA]
¢þ
>WENV170838659
MDSZ01171926
[MDSZ] marine metagenome; seawater
49283
49358
+
Arg
CCT
[ENA]
¢þ
>C181034377
CP018898
Betaproteobacteria
Bordetella trematum [CP018898]
1056174
1056099
-
Arg
CCT
-
¡û
>C191004344
AP018721
Betaproteobacteria
Sulfuritortus calidifontis J1A [AP018721]
1788399
1788474
+
Arg
CCT
-
¡û
>C191209576
LR134378
Betaproteobacteria
Lautropia mirabilis NCTC12852 [LR134378]
1793024
1793099
+
Arg
CCT
-
¡û
>W09111742
ABXG01000003
Betaproteobacteria
beta proteobacterium KB13 [ABXG]
251260
251335
+
Arg
CCT
[ENA]
¡û
>W1511310811
JPQP01000002
Betaproteobacteria
Bordetella trematum HR18 [JPQP]
68776
68701
-
Arg
CCT
[ENA]
¡û
>C161030843
CP011001
Betaproteobacteria
Methylophilales bacterium MBRSF5 [CP011001]
803868
803793
-
Arg
CCT
[Ensembl]
¡û
>C161030863
CP011002
Betaproteobacteria
Methylophilales bacterium MBRS-H7 [CP011002]
1114755
1114830
+
Arg
CCT
[Ensembl]
¡û
>C161030897
CP011003
Betaproteobacteria
Methylophilales bacterium MBRSG12 [CP011003]
1114755
1114830
+
Arg
CCT
[Ensembl]
¡û
>C161109094
LT546645
Betaproteobacteria
Bordetella trematum H044680328 [LT546645]
2342444
2342369
-
Arg
CCT
[Ensembl]
¡û
>W1610649428
LJIA01000001
Betaproteobacteria
beta proteobacterium AAP99 [LJIA]
276549
276474
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK