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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.285028 (57 seq.)
>W1711166990
LVVY01000100
Alphaproteobacteria
Devosia elaeis S37 [LVVY]
4517
4442
-
Lys
CTT
[ENA]
¡û
>W131180129
ARMX01000024
Alphaproteobacteria
Novispirillum itersonii subsp. itersonii ATCC 12639 [ARMX]
77001
77076
+
Lys
CTT
[ENA]
¡û
>W1711188770
LWQT01000010
Alphaproteobacteria
Paramagnetospirillum marisnigri [LWQT]
5218
5143
-
Lys
CTT
[ENA]
¡û
>W131223645
AUCF01000013
Alphaproteobacteria
Azospirillum halopraeferens DSM 3675 [AUCF]
156285
156210
-
Lys
CTT
[ENA]
¡û
>W131223660
AUCF01000027
Alphaproteobacteria
Azospirillum halopraeferens DSM 3675 [AUCF]
50992
51067
+
Lys
CTT
[ENA]
¡û
>W1711385862
MEET01000005
Alphaproteobacteria
Pelagibacterium sp. SCN 63-126 [MEET]
7805
7880
+
Lys
CTT
[ENA]
¡û
>W1711385943
MEEU01000029
Alphaproteobacteria
Pelagibacterium sp. SCN 63-23 [MEEU]
51004
50929
-
Lys
CTT
[ENA]
¡û
>W1711385954
MEEU01000049
Alphaproteobacteria
Pelagibacterium sp. SCN 63-23 [MEEU]
18326
18401
+
Lys
CTT
[ENA]
¡û
>W1711385979
MEEV01000002
Alphaproteobacteria
Pelagibacterium sp. SCN 64-44 [MEEV]
199037
199112
+
Lys
CTT
[ENA]
¡û
>W1711386016
MEEV01000025
Alphaproteobacteria
Pelagibacterium sp. SCN 64-44 [MEEV]
168183
168258
+
Lys
CTT
[ENA]
¡û
>W1711387089
MEGG01000030
Alphaproteobacteria
Pelagibacterium sp. SCN 63-17 [MEGG]
89604
89679
+
Lys
CTT
[ENA]
¡û
>W1711504826
MKUY01000003
Alphaproteobacteria
Devosia sp. 63-57 [MKUY]
604076
604001
-
Lys
CTT
[ENA]
¡û
>C171115922
CP021112
Alphaproteobacteria
Pseudorhodoplanes sinuspersici RIPI110 [CP021112]
3067663
3067738
+
Lys
CTT
-
¡û
>WENV180261936
OBEQ011340838
[OBEQ] groundwater metagenome; groundwater
6
81
+
Lys
CTT
[ENA]
¢þ
>W141226112
BAJU01000011
Alphaproteobacteria
Acetobacter okinawensis JCM 25146 [BAJU]
25105
25180
+
Lys
CTT
[ENA]
¡û
>W141236657
BBIO01000005
Alphaproteobacteria
Tepidicaulis marinus MA2 [BBIO]
131723
131798
+
Lys
CTT
[ENA]
¡û
>WENV183727111
PJTO01005274
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
829
754
-
Lys
CTT
[ENA]
¢þ
>WENV183728542
PJTQ01000121
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
36880
36955
+
Lys
CTT
[ENA]
¢þ
>WENV183729523
PJTQ01059306
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
204
279
+
Lys
CTT
[ENA]
¢þ
>WENV183729907
PJTR01000172
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
73929
73854
-
Lys
CTT
[ENA]
¢þ
>WENV183731460
PJTT01000005
[PJTT] soil metagenome; Soil (2) enriched on wood chips
186616
186541
-
Lys
CTT
[ENA]
¢þ
>WENV183732522
PJTX01001453
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
691
616
-
Lys
CTT
[ENA]
¢þ
>WENV183734156
PJTZ01000112
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
54291
54216
-
Lys
CTT
[ENA]
¢þ
>WENV183736834
PJUD01000051
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
114564
114639
+
Lys
CTT
[ENA]
¢þ
>WENV183737366
PJUD01004915
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
685
760
+
Lys
CTT
[ENA]
¢þ
>WENV183739734
PJUF01000004
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
572672
572747
+
Lys
CTT
[ENA]
¢þ
>WENV183740047
PJUF01000196
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
50433
50508
+
Lys
CTT
[ENA]
¢þ
>WENV183743629
PJUJ01012664
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
550
475
-
Lys
CTT
[ENA]
¢þ
>WENV183745044
PJUL01001590
[PJUL] feces metagenome; Chicken feces enriched on filter paper
3801
3876
+
Lys
CTT
[ENA]
¢þ
>WENV183745118
PJUL01002581
[PJUL] feces metagenome; Chicken feces enriched on filter paper
3896
3821
-
Lys
CTT
[ENA]
¢þ
>WENV170891938
MDTD01031564
[MDTD] marine metagenome; seawater
77
2
-
Lys
CTT
[ENA]
¢þ
>WENV170962860
MRWF01028586
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
35901
35976
+
Lys
CTT
[ENA]
¢þ
>WENV170963837
MRWG01000930
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
69369
69294
-
Lys
CTT
[ENA]
¢þ
>C181139129
CP026747
Alphaproteobacteria
Devosia sp. I507 [CP026747]
3090592
3090667
+
Lys
CTT
-
¡û
>C181179047
CP029479
Alphaproteobacteria
Phenylobacterium parvum HYN0004 [CP029479]
1158181
1158106
-
Lys
CTT
-
¡û
>C191071860
CP030126
Alphaproteobacteria
Indioceanicola profundi SCSIO 08040 [CP030126]
2094349
2094274
-
Lys
CTT
-
¡û
>C191071861
CP030126
Alphaproteobacteria
Indioceanicola profundi SCSIO 08040 [CP030126]
2094243
2094168
-
Lys
CTT
-
¡û
>W1910442995
FWFR01000003
Alphaproteobacteria
Oceanibacterium hippocampi CECT 7691 [FWFR]
386710
386635
-
Lys
CTT
[ENA]
¡û
>W1910871859
NCXK01000004
Alphaproteobacteria
Acetobacter fabarum KR [NCXK]
90688
90613
-
Lys
CTT
[ENA]
¡û
>W1910872355
NDFO01000014
Alphaproteobacteria
Acetobacter syzygii KR-1 [NDFO]
78587
78662
+
Lys
CTT
[ENA]
¡û
>W1910872400
NDFP01000013
Alphaproteobacteria
Acetobacter syzygii KR-2 [NDFP]
79111
79186
+
Lys
CTT
[ENA]
¡û
>W1810101808
PGTO01000010
Alphaproteobacteria
Paramagnetospirillum kuznetsovii LBB-42 [PGTO]
86169
86094
-
Lys
CTT
[ENA]
¡û
>W1810426226
PYVZ01000019
Alphaproteobacteria
Devosia indica IO390501 [PYVZ]
12081
12006
-
Lys
CTT
[ENA]
¡û
>W1810576893
QENV01000002
Alphaproteobacteria
Devosia sp. PTEAB7WZ [QENV]
200772
200847
+
Lys
CTT
[ENA]
¡û
>W1511541953
JZEX01000143
Alphaproteobacteria
Devosia geojensis BD-c194 [JZEX]
2925
3000
+
Lys
CTT
[ENA]
¡û
>W1511541974
JZEY01000054
Alphaproteobacteria
Devosia chinhatensis IPL18 [JZEY]
1872971
1872896
-
Lys
CTT
[ENA]
¡û
>C161073353
CP014525
Alphaproteobacteria
Haematospirillum jordaniae H5569 [CP014525]
1271118
1271193
+
Lys
CTT
[Ensembl]
¡û
>W1610026871
AVFK01000004
Alphaproteobacteria
Skermanella aerolata KACC 11604 [AVFK]
281531
281456
-
Lys
CTT
[ENA]
¡û
>W1610040937
BAMZ01000082
Alphaproteobacteria
Acetobacter syzygii 9H-2 [BAMZ]
78748
78823
+
Lys
CTT
[ENA]
¡û
>W1610977530
LVVY01000100
Alphaproteobacteria
Devosia elaeis S37 [LVVY]
4517
4442
-
Lys
CTT
[ENA]
¡û
>W1610990889
LWQT01000010
Alphaproteobacteria
Paramagnetospirillum marisnigri [LWQT]
5218
5143
-
Lys
CTT
[ENA]
¡û
>WENV077705
AAFX01091226
Soil microbial communities from Minnesota Farm
674
749
+
Lys
CTT
[ENA]
>W1710023036
AVFK01000004
Alphaproteobacteria
Skermanella aerolata KACC 11604 [AVFK]
281531
281456
-
Lys
CTT
[ENA]
¡û
>W1710038135
BAMZ01000082
Alphaproteobacteria
Acetobacter syzygii 9H-2 [BAMZ]
78748
78823
+
Lys
CTT
[ENA]
¡û
>W1710579476
FPCK01000001
Alphaproteobacteria
Devosia crocina [FPCK]
1139481
1139556
+
Lys
CTT
[ENA]
¡û
>W1710582164
FPKU01000001
Alphaproteobacteria
Devosia enhydra [FPKU]
1273358
1273283
-
Lys
CTT
[ENA]
¡û
>W1710609389
FXWK01000001
Alphaproteobacteria
Devosia lucknowensis [FXWK]
1562211
1562136
-
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK