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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.285336 (67 seq.)
>W1711318796
MAYS01000517
Gammaproteobacteria
Candidatus Erwinia dacicola [MAYS]
845
770
-
His
GTG
[ENA]
¡û
>W1711430145
MIIW01000095
Gammaproteobacteria
Shigella sp. FC1655 [MIIW]
140478
140403
-
His
GTG
[ENA]
¡û
>W1711572088
MNAV01000027
Gammaproteobacteria
Glaesserella parasuis [MNAV]
31408
31483
+
His
GTG
[ENA]
¡û
>W1711634933
MPUI01000013
Gammaproteobacteria
Pectobacterium actinidiae subsp. actinidiae [MPUI]
66156
66081
-
His
GTG
[ENA]
¡û
>W1711659217
MQRI01000005
Gammaproteobacteria
Serratia marcescens subsp. marcescens [MQRI]
192819
192894
+
His
GTG
[ENA]
¡û
>W1711659298
MQRJ01000037
Gammaproteobacteria
Serratia marcescens subsp. marcescens [MQRJ]
36210
36135
-
His
GTG
[ENA]
¡û
>W131094621
AOOC01000002
Gammaproteobacteria
Dickeya chrysanthemi NCPPB 516 [AOOC]
47579
47654
+
His
GTG
[ENA]
¡û
>W131212740
ATOI01000041
Gammaproteobacteria
Serratia marcescens MC6000 [ATOI]
50945
51020
+
His
GTG
[ENA]
¡û
>W131244949
CAQV01000103
Gammaproteobacteria
Yersinia pseudotuberculosis B-6863 [CAQV]
33668
33743
+
His
GTG
[ENA]
¡û
>W1711962689
NCTO01000013
Gammaproteobacteria
Cronobacter sakazakii [NCTO]
35149
35224
+
His
GTG
[ENA]
¡û
>W1712080732
NHMW01000057
Gammaproteobacteria
Yersinia pestis subsp. microtus bv. Altaica [NHMW]
1341
1266
-
His
GTG
[ENA]
¡û
>W1712080980
NHNA01000024
Gammaproteobacteria
Yersinia pestis subsp. microtus bv. Altaica [NHNA]
1341
1266
-
His
GTG
[ENA]
¡û
>W1712081106
NHNC01000024
Gammaproteobacteria
Yersinia pestis subsp. microtus bv. Xilingolensis [NHNC]
1341
1266
-
His
GTG
[ENA]
¡û
>W1712083673
NHQM01000017
Gammaproteobacteria
Cronobacter sakazakii [NHQM]
33211
33286
+
His
GTG
[ENA]
¡û
>C008252
BX950851
Gammaproteobacteria
Pectobacterium atrosepticum [BX950851]
4692844
4692769
-
His
GTG
[Ensembl]
¡û
>W141001368
ADOW01000886
Gammaproteobacteria
Yersinia pestis 164 [ADOW]
117
42
-
His
GTG
[ENA]
¡û
>W141002679
ADRK01001242
Gammaproteobacteria
Yersinia pestis CMCC92004 [ADRK]
117
42
-
His
GTG
[ENA]
¡û
>W141002972
ADRZ01000387
Gammaproteobacteria
Yersinia pestis biovar Antiqua str. E1979001 [ADRZ]
117
42
-
His
GTG
[ENA]
¡û
>W141003680
ADTH01001060
Gammaproteobacteria
Yersinia pestis YN472 [ADTH]
1861
1936
+
His
GTG
[ENA]
¡û
>W141021182
AJLC01000104
Gammaproteobacteria
Cronobacter sakazakii ES35 [AJLC]
118
43
-
His
GTG
[ENA]
¡û
>WENV181228912
OFEI01000636
[OFEI] insect metagenome; insect
672
597
-
His
GTG
[ENA]
¢þ
>WENV181232014
OFEL01000057
[OFEL] insect metagenome; insect
1800
1875
+
His
GTG
[ENA]
¢þ
>WENV181232082
OFEL01005411
[OFEL] insect metagenome; insect
1241
1316
+
His
GTG
[ENA]
¢þ
>WENV181389238
OFRN01000008
[OFRN] metagenome; faeces
214844
214919
+
His
GTG
[ENA]
¢þ
>W141245335
CALD01000014
Gammaproteobacteria
Cronobacter malonaticus 507 [CALD]
4067596
4067671
+
His
GTG
[ENA]
¡û
>W141247789
CBLG010000097
Gammaproteobacteria
Yersinia wautersii WP-930601 [CBLG]
13422
13497
+
His
GTG
[ENA]
¡û
>WENV182807905
OJWA01000087
[OJWA] human gut metagenome; human gut
21186
21111
-
His
GTG
[ENA]
¢þ
>WENV182827449
OKCZ01001212
[OKCZ] human gut metagenome; human gut
708
783
+
His
GTG
[ENA]
¢þ
>WENV182855867
OKNF01000065
[OKNF] human gut metagenome; human gut
33274
33349
+
His
GTG
[ENA]
¢þ
>C08004849
CU468135
Gammaproteobacteria
Erwinia tasmaniensis Et1/99 [CU468135]
250041
250116
+
His
GTG
[Ensembl]
¡û
>WENV183521469
OMNU01007518
[OMNU] human gut metagenome; feces
1333
1258
-
His
GTG
[ENA]
¢þ
>WENV183635431
OOIV01000012
[OOIV] human gut metagenome; Biopsy of a nasal polyp
93687
93612
-
His
GTG
[ENA]
¢þ
>W141520002
JGVH01000038
Gammaproteobacteria
Photorhabdus temperata subsp. temperata Meg1 [JGVH]
34558
34483
-
His
GTG
[ENA]
¡û
>W09110790
ABVX01000035
Gammaproteobacteria
Pectobacterium brasiliense subsp. brasiliensis PBR1692 [ABVX]
2373
2298
-
His
GTG
[ENA]
¡û
>W09117683
ACCI01000007
Gammaproteobacteria
Providencia rettgeri DSM 1131 [ACCI]
90585
90510
-
His
GTG
[ENA]
¡û
>W141712607
JMRT01000012
Gammaproteobacteria
Pantoea sp. 3.5.1 [JMRT]
53174
53099
-
His
GTG
[ENA]
¡û
>W141810879
JPWM01000004
Gammaproteobacteria
Serratia marcescens [JPWM]
217945
218020
+
His
GTG
[ENA]
¡û
>W141821451
JQNO01000001
Gammaproteobacteria
Pantoea sp. 9140 [JQNO]
3993324
3993399
+
His
GTG
[ENA]
¡û
>W1910617958
LJAM02000452
Gammaproteobacteria
Candidatus Erwinia dacicola dacicola Oroville [LJAM]
594
519
-
His
GTG
[ENA]
¡û
>W10113673
ADGK01000279
Gammaproteobacteria
Edwardsiella tarda ATCC 23685 [ADGK]
9109
9184
+
His
GTG
[ENA]
¡û
>C10106505
FP236842
Gammaproteobacteria
Erwinia pyrifoliae Ep1/96 [FP236842]
227461
227536
+
His
GTG
[Ensembl]
¡û
>WENV11102060
AGFT01060662
[AGFT] ant fungus garden metagenome; Atta colombica fungus garden bottom
210
135
-
His
GTG
[ENA]
¡û
>W11117009
ADGK01000279
Gammaproteobacteria
Edwardsiella tarda ATCC 23685 [ADGK]
9109
9184
+
His
GTG
[ENA]
¡û
>W1511396133
JTBU01000001
Gammaproteobacteria
Serratia marcescens FDAARGOS_62 [JTBU]
1807500
1807425
-
His
GTG
[ENA]
¡û
>W1511399627
JTEU02000015
Gammaproteobacteria
Hafnia alvei DSM 30099 [JTEU]
40368
40443
+
His
GTG
[ENA]
¡û
>W1511436070
JUJM01000009
Gammaproteobacteria
Pectobacterium brasiliense subsp. brasiliense YC T3 [JUJM]
233507
233432
-
His
GTG
[ENA]
¡û
>W1511459174
JVKD01000015
Gammaproteobacteria
Proteus mirabilis 360_PMIR [JVKD]
21672
21747
+
His
GTG
[ENA]
¡û
>W1511472869
JVZU01000126
Gammaproteobacteria
Serratia marcescens 1186_SMAR [JVZU]
9683
9758
+
His
GTG
[ENA]
¡û
>W1511507573
JXNU01000003
Gammaproteobacteria
Erwinia tracheiphila BuffGH [JXNU]
2728180
2728105
-
His
GTG
[ENA]
¡û
>W1511512037
JXTQ01000032
Gammaproteobacteria
Atlantibacter hermannii DDE1 [JXTQ]
47773
47698
-
His
GTG
[ENA]
¡û
>W1511574054
LANL01000032
Gammaproteobacteria
Proteus mirabilis 25933 GTA [LANL]
34165
34240
+
His
GTG
[ENA]
¡û
>W1511589947
LBFK01000010
Gammaproteobacteria
Yersinia pestis 125 B plague Bombay [LBFK]
25012
25087
+
His
GTG
[ENA]
¡û
>W1511632878
LDEG01000012
Gammaproteobacteria
Serratia sp. TEL [LDEG]
81566
81491
-
His
GTG
[ENA]
¡û
>C121012689
CP003415
Gammaproteobacteria
Pectobacterium parmentieri SCC3193 [CP003415]
4695770
4695695
-
His
GTG
-
¡û
>W121011340
AGJY01000245
Gammaproteobacteria
Yersinia pestis biovar Orientalis str. AS200902147 [AGJY]
24887
24962
+
His
GTG
[ENA]
¡û
>W121084818
AKIT01000044
Gammaproteobacteria
Pantoea sp. YR343 [AKIT]
31780
31855
+
His
GTG
[ENA]
¡û
>W121096297
AKRV01000483
Gammaproteobacteria
Yersinia pestis PY-10 [AKRV]
1110
1035
-
His
GTG
[ENA]
¡û
>W121097104
AKSI01000498
Gammaproteobacteria
Yersinia pestis PY-42 [AKSI]
1114
1039
-
His
GTG
[ENA]
¡û
>W121097289
AKSL01000500
Gammaproteobacteria
Yersinia pestis PY-47 [AKSL]
1114
1039
-
His
GTG
[ENA]
¡û
>W121097351
AKSM01000559
Gammaproteobacteria
Yersinia pestis PY-48 [AKSM]
1112
1037
-
His
GTG
[ENA]
¡û
>W121097528
AKSP01001215
Gammaproteobacteria
Yersinia pestis PY-54 [AKSP]
319
244
-
His
GTG
[ENA]
¡û
>W121097709
AKSS01000747
Gammaproteobacteria
Yersinia pestis PY-58 [AKSS]
1110
1035
-
His
GTG
[ENA]
¡û
>W121098013
AKSX01000921
Gammaproteobacteria
Yersinia pestis PY-64 [AKSX]
1110
1035
-
His
GTG
[ENA]
¡û
>W121098257
AKTB01000502
Gammaproteobacteria
Yersinia pestis PY-72 [AKTB]
1116
1041
-
His
GTG
[ENA]
¡û
>W121098438
AKTE01000670
Gammaproteobacteria
Yersinia pestis PY-89 [AKTE]
1110
1035
-
His
GTG
[ENA]
¡û
>W121098687
AKTI01000435
Gammaproteobacteria
Yersinia pestis PY-93 [AKTI]
1110
1035
-
His
GTG
[ENA]
¡û
>C131006011
CP003745
Gammaproteobacteria
Bibersteinia trehalosi USDA-ARS-USMARC-192 [CP003745]
347922
347997
+
His
GTG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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