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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.285353 (80 seq.)
>W1711386793
MEFU01000014
Betaproteobacteria
Comamonadaceae bacterium SCN 68-20 [MEFU]
93805
93880
+
Gly
GCC
[ENA]
¡û
>W1711386795
MEFU01000014
Betaproteobacteria
Comamonadaceae bacterium SCN 68-20 [MEFU]
94141
94216
+
Gly
GCC
[ENA]
¡û
>W1711504283
MKUK01000025
Betaproteobacteria
Alicycliphilus sp. 69-12 [MKUK]
1327
1402
+
Gly
GCC
[ENA]
¡û
>W1711504315
MKUK01000089
Betaproteobacteria
Alicycliphilus sp. 69-12 [MKUK]
246
171
-
Gly
GCC
[ENA]
¡û
>W1711504652
MKUT01000289
Betaproteobacteria
Burkholderiales bacterium 68-20 [MKUT]
49062
48987
-
Gly
GCC
[ENA]
¡û
>W1711504654
MKUT01000289
Betaproteobacteria
Burkholderiales bacterium 68-20 [MKUT]
48724
48649
-
Gly
GCC
[ENA]
¡û
>W131239416
BANP01000130
Betaproteobacteria
Acidovorax sp. MR-S7 [BANP]
8882
8807
-
Gly
GCC
[ENA]
¡û
>W131239418
BANP01000130
Betaproteobacteria
Acidovorax sp. MR-S7 [BANP]
8562
8487
-
Gly
GCC
[ENA]
¡û
>C000357
CP000539
Betaproteobacteria
Acidovorax sp. JS42 [CP000539]
1287848
1287923
+
Gly
GCC
[Ensembl]
¡û
>C000359
CP000539
Betaproteobacteria
Acidovorax sp. JS42 [CP000539]
1408638
1408713
+
Gly
GCC
[Ensembl]
¡û
>WENV180263977
OBEQ011524948
[OBEQ] groundwater metagenome; groundwater
82
157
+
Gly
GCC
[ENA]
¢þ
>WENV180295365
OBIZ01074386
[OBIZ] soil metagenome; soil
582
507
-
Gly
GCC
[ENA]
¢þ
>WENV180350231
OBLQ010000005
[OBLQ] soil metagenome; soil
37046
36971
-
Gly
GCC
[ENA]
¢þ
>WENV180350427
OBLQ010000858
[OBLQ] soil metagenome; soil
3729
3804
+
Gly
GCC
[ENA]
¢þ
>WENV183635782
OOIX01007841
[OOIX] human gut metagenome; mucous membran biopsy from the gut
377
302
-
Gly
GCC
[ENA]
¢þ
>WENV170011863
APMI01097525
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
76
1
-
Gly
GCC
[ENA]
¢þ
>WENV170168183
CEOP01067930
[CEOP] marine metagenome genome assembly TARA_009_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1203
1278
+
Gly
GCC
[ENA]
¢þ
>WENV170684610
LFRM01048993
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
1568
1643
+
Gly
GCC
[ENA]
¢þ
>C181019013
CP016278
Betaproteobacteria
Diaphorobacter nitroreducens SL-205 [CP016278]
1725110
1725035
-
Gly
GCC
-
¡û
>C181019015
CP016278
Betaproteobacteria
Diaphorobacter nitroreducens SL-205 [CP016278]
1724792
1724717
-
Gly
GCC
-
¡û
>C181158501
CP027667
Betaproteobacteria
Melaminivora suipulveris SC2-9 [CP027667]
530611
530536
-
Gly
GCC
-
¡û
>C181158503
CP027667
Betaproteobacteria
Melaminivora suipulveris SC2-9 [CP027667]
530265
530190
-
Gly
GCC
-
¡û
>C181159965
CP027792
Betaproteobacteria
Pulveribacter suum SC2-7 [CP027792]
1486408
1486483
+
Gly
GCC
-
¡û
>C181159967
CP027792
Betaproteobacteria
Pulveribacter suum SC2-7 [CP027792]
1486740
1486815
+
Gly
GCC
-
¡û
>W09105950
AASD01000011
Betaproteobacteria
Acidovorax sp. JS42 [AASD]
2304
2229
-
Gly
GCC
[ENA]
¡û
>W09105971
AASD01000040
Betaproteobacteria
Acidovorax sp. JS42 [AASD]
2335
2260
-
Gly
GCC
[ENA]
¡û
>W09117923
ACCM01000001
Betaproteobacteria
[Acidovorax] ebreus TPSY [ACCM]
199508
199433
-
Gly
GCC
[ENA]
¡û
>W09117925
ACCM01000001
Betaproteobacteria
[Acidovorax] ebreus TPSY [ACCM]
199191
199116
-
Gly
GCC
[ENA]
¡û
>C09104043
CP001392
Betaproteobacteria
[Acidovorax] ebreus TPSY [CP001392]
1189815
1189890
+
Gly
GCC
[Ensembl]
¡û
>C09104045
CP001392
Betaproteobacteria
[Acidovorax] ebreus TPSY [CP001392]
1190132
1190207
+
Gly
GCC
[Ensembl]
¡û
>W1910803610
MTBE01000031
Betaproteobacteria
Diaphorobacter sp. LR2014-1 [MTBE]
47588
47663
+
Gly
GCC
[ENA]
¡û
>W1910803612
MTBE01000031
Betaproteobacteria
Diaphorobacter sp. LR2014-1 [MTBE]
47906
47981
+
Gly
GCC
[ENA]
¡û
>W1910972111
NKDB02000004
Betaproteobacteria
Alicycliphilus denitrificans BQ1 [NKDB]
314495
314420
-
Gly
GCC
[ENA]
¡û
>W1910972113
NKDB02000004
Betaproteobacteria
Alicycliphilus denitrificans BQ1 [NKDB]
160514
160439
-
Gly
GCC
[ENA]
¡û
>W1911244712
NSJB01000001
Betaproteobacteria
Vandammella animalimorsus NML00-0135 [NSJB]
159223
159298
+
Gly
GCC
[ENA]
¡û
>W1911244722
NSJB01000002
Betaproteobacteria
Vandammella animalimorsus NML00-0135 [NSJB]
171002
171077
+
Gly
GCC
[ENA]
¡û
>W1911244772
NSJC01000006
Betaproteobacteria
Vandammella animalimorsus NML97-0112 [NSJC]
13081
13156
+
Gly
GCC
[ENA]
¡û
>W1911244793
NSJC01000027
Betaproteobacteria
Vandammella animalimorsus NML97-0112 [NSJC]
15391
15316
-
Gly
GCC
[ENA]
¡û
>W1911244805
NSJD01000001
Betaproteobacteria
Vandammella animalimorsus NML79-0751 [NSJD]
333716
333791
+
Gly
GCC
[ENA]
¡û
>W1911244837
NSJD01000033
Betaproteobacteria
Vandammella animalimorsus NML79-0751 [NSJD]
600
525
-
Gly
GCC
[ENA]
¡û
>W1911244854
NSJE01000003
Betaproteobacteria
Vandammella animalimorsus NML120219 [NSJE]
41794
41719
-
Gly
GCC
[ENA]
¡û
>W1911244881
NSJE01000016
Betaproteobacteria
Vandammella animalimorsus NML120219 [NSJE]
16391
16316
-
Gly
GCC
[ENA]
¡û
>W1911244916
NSJF01000002
Betaproteobacteria
Vandammella animalimorsus NML03-0146 [NSJF]
217176
217101
-
Gly
GCC
[ENA]
¡û
>W1911244931
NSJF01000005
Betaproteobacteria
Vandammella animalimorsus NML03-0146 [NSJF]
154158
154233
+
Gly
GCC
[ENA]
¡û
>W1911270473
NTBH01000005
Betaproteobacteria
Vandammella animalimorsus NML91-0036 [NTBH]
229884
229809
-
Gly
GCC
[ENA]
¡û
>W1911270488
NTBH01000017
Betaproteobacteria
Vandammella animalimorsus NML91-0036 [NTBH]
711
636
-
Gly
GCC
[ENA]
¡û
>W1911270517
NTBI01000006
Betaproteobacteria
Vandammella animalimorsus NML91-0035 [NTBI]
201878
201803
-
Gly
GCC
[ENA]
¡û
>W1911270534
NTBI01000022
Betaproteobacteria
Vandammella animalimorsus NML91-0035 [NTBI]
711
636
-
Gly
GCC
[ENA]
¡û
>W1810088936
PGEI01000005
Betaproteobacteria
Comamonadaceae bacterium CD01 [PGEI]
43588
43663
+
Gly
GCC
[ENA]
¡û
>W1810088999
PGEJ01000017
Betaproteobacteria
Alicycliphilus denitrificans CD02 [PGEJ]
47252
47327
+
Gly
GCC
[ENA]
¡û
>W1810089009
PGEJ01000031
Betaproteobacteria
Alicycliphilus denitrificans CD02 [PGEJ]
5041
4966
-
Gly
GCC
[ENA]
¡û
>W1810609655
QGUB01000011
Betaproteobacteria
Melaminivora alkalimesophila DSM 26006 [QGUB]
1553
1478
-
Gly
GCC
[ENA]
¡û
>W1810609657
QGUB01000011
Betaproteobacteria
Melaminivora alkalimesophila DSM 26006 [QGUB]
1188
1113
-
Gly
GCC
[ENA]
¡û
>W1510016556
BBSJ01000035
Betaproteobacteria
Alicycliphilus sp. B1 [BBSJ]
9803
9878
+
Gly
GCC
[ENA]
¡û
>W1510016593
BBSJ01000052
Betaproteobacteria
Alicycliphilus sp. B1 [BBSJ]
448040
447965
-
Gly
GCC
[ENA]
¡û
>W1510016595
BBSJ01000052
Betaproteobacteria
Alicycliphilus sp. B1 [BBSJ]
355166
355091
-
Gly
GCC
[ENA]
¡û
>W10119599
ADWA01000010
Betaproteobacteria
Alicycliphilus denitrificans BC [ADWA]
57509
57434
-
Gly
GCC
[ENA]
¡û
>W10119615
ADWA01000038
Betaproteobacteria
Alicycliphilus denitrificans BC [ADWA]
18733
18658
-
Gly
GCC
[ENA]
¡û
>C11100602
CP002449
Betaproteobacteria
Alicycliphilus denitrificans BC [CP002449]
3091467
3091392
-
Gly
GCC
[Ensembl]
¡û
>C11100604
CP002449
Betaproteobacteria
Alicycliphilus denitrificans BC [CP002449]
2998614
2998539
-
Gly
GCC
[Ensembl]
¡û
>C11100627
CP002657
Betaproteobacteria
Alicycliphilus denitrificans K601 [CP002657]
1552987
1553062
+
Gly
GCC
[Ensembl]
¡û
>C11100629
CP002657
Betaproteobacteria
Alicycliphilus denitrificans K601 [CP002657]
1645555
1645630
+
Gly
GCC
[Ensembl]
¡û
>W1510742436
CYIG01000037
Betaproteobacteria
Paenacidovorax caeni R-24608 [CYIG]
2395
2320
-
Gly
GCC
[ENA]
¡û
>W1510742438
CYIG01000037
Betaproteobacteria
Paenacidovorax caeni R-24608 [CYIG]
2098
2023
-
Gly
GCC
[ENA]
¡û
>W1511390774
JSYI01000123
Betaproteobacteria
Diaphorobacter sp. J5-51 [JSYI]
20312
20387
+
Gly
GCC
[ENA]
¡û
>W11125865
ADWA01000010
Betaproteobacteria
Alicycliphilus denitrificans BC [ADWA]
57509
57434
-
Gly
GCC
[ENA]
¡û
>W11125881
ADWA01000038
Betaproteobacteria
Alicycliphilus denitrificans BC [ADWA]
18733
18658
-
Gly
GCC
[ENA]
¡û
>W1511595995
LBNQ01000008
Betaproteobacteria
Lampropedia cohaerens CT6 [LBNQ]
63912
63837
-
Gly
GCC
[ENA]
¡û
>W1511596038
LBNQ01000037
Betaproteobacteria
Lampropedia cohaerens CT6 [LBNQ]
129322
129397
+
Gly
GCC
[ENA]
¡û
>W121108899
ALEE01000153
Betaproteobacteria
Melaminivora alkalimesophila CRZ1 [ALEE]
1116
1041
-
Gly
GCC
[ENA]
¡û
>W121108901
ALEE01000154
Betaproteobacteria
Melaminivora alkalimesophila CRZ1 [ALEE]
234
159
-
Gly
GCC
[ENA]
¡û
>W1610042810
BAZJ01000013
Betaproteobacteria
Diaphorobacter nitroreducens JCM 11421 [BAZJ]
6460
6535
+
Gly
GCC
[ENA]
¡û
>W1610042812
BAZJ01000013
Betaproteobacteria
Diaphorobacter nitroreducens JCM 11421 [BAZJ]
6777
6852
+
Gly
GCC
[ENA]
¡û
>W1710039970
BAZJ01000013
Betaproteobacteria
Diaphorobacter nitroreducens JCM 11421 [BAZJ]
6460
6535
+
Gly
GCC
[ENA]
¡û
>W1710039972
BAZJ01000013
Betaproteobacteria
Diaphorobacter nitroreducens JCM 11421 [BAZJ]
6777
6852
+
Gly
GCC
[ENA]
¡û
>W1710522968
FNHP01000001
Betaproteobacteria
Oryzisolibacter propanilivorax EPL6 [FNHP]
105577
105652
+
Gly
GCC
[ENA]
¡û
>W1710522970
FNHP01000001
Betaproteobacteria
Oryzisolibacter propanilivorax EPL6 [FNHP]
105926
106001
+
Gly
GCC
[ENA]
¡û
>W1710578884
FPBX01000036
Betaproteobacteria
Paenacidovorax caeni [FPBX]
2159
2084
-
Gly
GCC
[ENA]
¡û
>W1710578886
FPBX01000036
Betaproteobacteria
Paenacidovorax caeni [FPBX]
1862
1787
-
Gly
GCC
[ENA]
¡û
>W1710583668
FQUZ01000014
Betaproteobacteria
Lampropedia hyalina DSM 16112 [FQUZ]
31730
31805
+
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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