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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.285363 (71 seq.)
>W1711178225
LWGO01000001
Gammaproteobacteria
Halomonas caseinilytica elongata [LWGO]
14778
14703
-
Thr
TGT
[ENA]
¡û
>W1711256806
LYSX01000023
Gammaproteobacteria
Ectothiorhodospiraceae bacterium BBD 1991-15 [LYSX]
27394
27469
+
Thr
TGT
[ENA]
¡û
>W1711509640
MKZT01000008
Gammaproteobacteria
Kushneria phosphatilytica YCWA18 [MKZT]
19442
19517
+
Thr
TGT
[ENA]
¡û
>W1711750452
MUMZ01000025
Gammaproteobacteria
Halomonas desiderata SP1 [MUMZ]
172
97
-
Thr
TGT
[ENA]
¡û
>W1711767935
MVBD01000007
Gammaproteobacteria
Marinicella sediminis F2 [MVBD]
30786
30711
-
Thr
TGT
[ENA]
¡û
>C171073686
CP018139
Gammaproteobacteria
Halomonas aestuarii Hb3 [CP018139]
1368317
1368242
-
Thr
TGT
-
¡û
>C171092330
CP019326
Gammaproteobacteria
Halomonas sp. 1513 [CP019326]
3759587
3759512
-
Thr
TGT
-
¡û
>W131176888
ARKK01000018
Gammaproteobacteria
Halomonas lutea DSM 23508 [ARKK]
301
226
-
Thr
TGT
[ENA]
¡û
>W131196512
ASTJ01000023
Gammaproteobacteria
Halomonas anticariensis FP35 = DSM 16096 [ASTJ]
151795
151720
-
Thr
TGT
[ENA]
¡û
>W131221011
AUAB01000015
Gammaproteobacteria
Halomonas anticariensis FP35 = DSM 16096 [AUAB]
21444
21519
+
Thr
TGT
[ENA]
¡û
>W131225926
AUDZ01000012
Gammaproteobacteria
Halomonas halocynthiae DSM 14573 [AUDZ]
44434
44509
+
Thr
TGT
[ENA]
¡û
>WENV180398840
OBQB01003523
[OBQB] marine metagenome; ENVO.00002150
364
289
-
Thr
TGT
[ENA]
¢þ
>WENV181205888
OFAQ01004812
[OFAQ] metagenome; hydrothermal vent
294
219
-
Thr
TGT
[ENA]
¢þ
>W141152702
AXCA01000003
Gammaproteobacteria
Halomonas sp. PBN3 [AXCA]
62341
62416
+
Thr
TGT
[ENA]
¡û
>W141212677
AZQX01000147
Gammaproteobacteria
Halomonas sp. BC04 [AZQX]
17658
17733
+
Thr
TGT
[ENA]
¡û
>W141279767
JAGO01000004
Gammaproteobacteria
Carnimonas nigrificans ATCC BAA-78 [JAGO]
26888
26813
-
Thr
TGT
[ENA]
¡û
>WENV170294236
CESC01051398
[CESC] marine metagenome genome assembly TARA_078_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
146
221
+
Thr
TGT
[ENA]
¢þ
>WENV170361956
CETM01037278
[CETM] marine metagenome genome assembly TARA_122_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
17600
17525
-
Thr
TGT
[ENA]
¢þ
>WENV170487547
CEVO01068239
[CEVO] marine metagenome genome assembly TARA_152_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
131
206
+
Thr
TGT
[ENA]
¢þ
>WENV170656923
JTFO01061516
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
87
162
+
Thr
TGT
[ENA]
¢þ
>WENV170683040
LFIK01003706
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
715
790
+
Thr
TGT
[ENA]
¢þ
>WENV170702471
LKMJ01002127
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
11341
11416
+
Thr
TGT
[ENA]
¢þ
>WENV170779298
LZQN01000246
[LZQN] oil field metagenome; sample BH-FW-7 from oil reservoir
364
439
+
Thr
TGT
[ENA]
¢þ
>WENV170826211
MDSY01107215
[MDSY] marine metagenome; seawater
628
553
-
Thr
TGT
[ENA]
¢þ
>WENV170958129
MKWU01000544
[MKWU] sponge metagenome;
57625
57700
+
Thr
TGT
[ENA]
¢þ
>WENV170965494
MTEU01003290
[MTEU] soil metagenome; naturally attenuated soil
13536
13611
+
Thr
TGT
[ENA]
¢þ
>WENV170966038
MTEV01012377
[MTEV] soil metagenome; soil bioaugmentation with soil previously exposed to atrazine
17344
17269
-
Thr
TGT
[ENA]
¢þ
>WENV170966532
MTEX01012805
[MTEX] soil metagenome; soil biostimulated with molasses as carbon source
18245
18170
-
Thr
TGT
[ENA]
¢þ
>C181052446
CP021435
Gammaproteobacteria
Halomonas beimenensis NTU-111 [CP021435]
242442
242517
+
Thr
TGT
-
¡û
>W141562127
JHYY01000026
Gammaproteobacteria
Halotalea alkalilenta DSM 17697 [JHYY]
14741
14816
+
Thr
TGT
[ENA]
¡û
>W1911245465
NSKB01000014
Gammaproteobacteria
Halomonas salipaludis WRN001 [NSKB]
43276
43201
-
Thr
TGT
[ENA]
¡û
>W1810062659
PDOG01000008
Gammaproteobacteria
Halomonas sp. LBP4 [PDOG]
21882
21957
+
Thr
TGT
[ENA]
¡û
>W1810062725
PDOH01000047
Gammaproteobacteria
Halomonas heilongjiangensis 9·î2Æü [PDOH]
35054
34979
-
Thr
TGT
[ENA]
¡û
>W1810177453
PJRN01000012
Gammaproteobacteria
Halomonas saliphila LCB169 [PJRN]
16430
16505
+
Thr
TGT
[ENA]
¡û
>W1810199974
PNRE01000093
Gammaproteobacteria
Halomonas heilongjiangensis DSM 26881 [PNRE]
27232
27157
-
Thr
TGT
[ENA]
¡û
>W1810199992
PNRF01000008
Gammaproteobacteria
Halomonas endophytica MC28 [PNRF]
37330
37255
-
Thr
TGT
[ENA]
¡û
>W1810200050
PNRG01000010
Gammaproteobacteria
Halomonas urumqiensis BZ-SZ-XJ27 [PNRG]
18897
18972
+
Thr
TGT
[ENA]
¡û
>W1810385346
PXNS01000001
Gammaproteobacteria
Halomonas litopenaei SYSU ZJ2214 [PXNS]
22067
22142
+
Thr
TGT
[ENA]
¡û
>W1810385474
PXNT01000032
Gammaproteobacteria
Halomonas sp. SYSU XM8 [PXNT]
262
187
-
Thr
TGT
[ENA]
¡û
>W1810387682
PXWD01000011
Gammaproteobacteria
Halomonas sp. ND22Bw [PXWD]
83614
83539
-
Thr
TGT
[ENA]
¡û
>W1810423968
PYUD01000005
Gammaproteobacteria
Halomonas urumqiensis BZ-SZ-XJ27T [PYUD]
171009
170934
-
Thr
TGT
[ENA]
¡û
>W1810425970
PYVV01000004
Gammaproteobacteria
Halomonas sp. BN3-1 [PYVV]
20450
20525
+
Thr
TGT
[ENA]
¡û
>W1810426128
PYVX01000010
Gammaproteobacteria
Halomonas denitrificans DSM 18045 [PYVX]
61184
61109
-
Thr
TGT
[ENA]
¡û
>W1810608679
QGTM01000033
Gammaproteobacteria
Halomonas sp. A11-A [QGTM]
454
529
+
Thr
TGT
[ENA]
¡û
>W1810624156
QHGY01000007
Gammaproteobacteria
Halomonas lactosivorans KCTC 52281 [QHGY]
16798
16873
+
Thr
TGT
[ENA]
¡û
>W1810696008
QLSX01000018
Gammaproteobacteria
Halomonas taeanensis USBA-857 [QLSX]
21104
21179
+
Thr
TGT
[ENA]
¡û
>W1810758266
QPII01000030
Gammaproteobacteria
Halomonas montanilacus PYC7W [QPII]
77
2
-
Thr
TGT
[ENA]
¡û
>W1810760694
QPKI01000033
Gammaproteobacteria
Halomonas sp. DQ26W [QPKI]
16950
17025
+
Thr
TGT
[ENA]
¡û
>W1511270575
JOKD01000015
Gammaproteobacteria
Halomonas salina CIFRI 1 [JOKD]
16079
16154
+
Thr
TGT
[ENA]
¡û
>W1511319660
JPZL01000001
Gammaproteobacteria
Halomonas xinjiangensis TRM 0175 [JPZL]
1580216
1580141
-
Thr
TGT
[ENA]
¡û
>W1511518490
JXYB01000103
Gammaproteobacteria
Halomonas sp. S2151 [JXYB]
20397
20472
+
Thr
TGT
[ENA]
¡û
>W1511565210
LAEZ01000031
Gammaproteobacteria
Halomonas sp. HG01 [LAEZ]
53177
53102
-
Thr
TGT
[ENA]
¡û
>C161068817
CP014226
Gammaproteobacteria
Halomonas chromatireducens AGD 8-3 [CP014226]
584639
584714
+
Thr
TGT
[Ensembl]
¡û
>C161068862
CP014226
Gammaproteobacteria
Halomonas chromatireducens AGD 8-3 [CP014226]
568657
568582
-
Thr
TGT
[Ensembl]
¡û
>W121063545
AJKS02000027
Gammaproteobacteria
Halomonas smyrnensis AAD6 [AJKS]
15507
15582
+
Thr
TGT
[ENA]
¡û
>W121123939
BAEU01000081
Gammaproteobacteria
Halomonas sp. KM-1 [BAEU]
16381
16456
+
Thr
TGT
[ENA]
¡û
>W1610082136
BDEO01000005
Gammaproteobacteria
Halomonas caseinilytica sinaiensis [BDEO]
114892
114967
+
Thr
TGT
[ENA]
¡û
>W1610082178
BDEP01000001
Gammaproteobacteria
Halomonas caseinilytica [BDEP]
15020
14945
-
Thr
TGT
[ENA]
¡û
>W1611019831
LYSX01000023
Gammaproteobacteria
Ectothiorhodospiraceae bacterium BBD 1991-15 [LYSX]
27394
27469
+
Thr
TGT
[ENA]
¡û
>W1710080909
BDEO01000005
Gammaproteobacteria
Halomonas caseinilytica sinaiensis [BDEO]
114892
114967
+
Thr
TGT
[ENA]
¡û
>W1710080951
BDEP01000001
Gammaproteobacteria
Halomonas caseinilytica [BDEP]
15020
14945
-
Thr
TGT
[ENA]
¡û
>W1710516128
FNCI01000017
Gammaproteobacteria
Halomonas taeanensis [FNCI]
51306
51231
-
Thr
TGT
[ENA]
¡û
>W1710519445
FNES01000024
Gammaproteobacteria
Halomonas gudaonensis [FNES]
8198
8123
-
Thr
TGT
[ENA]
¡û
>W1710521323
FNGH01000012
Gammaproteobacteria
Halomonas pantelleriensis [FNGH]
142291
142216
-
Thr
TGT
[ENA]
¡û
>W1710521380
FNGI01000011
Gammaproteobacteria
Halomonas muralis [FNGI]
143100
143025
-
Thr
TGT
[ENA]
¡û
>W1710524577
FNIV01000007
Gammaproteobacteria
Halomonas shengliensis [FNIV]
108475
108400
-
Thr
TGT
[ENA]
¡û
>W1710528574
FNNI01000004
Gammaproteobacteria
Aidingimonas halophila [FNNI]
16149
16224
+
Thr
TGT
[ENA]
¡û
>W1710545763
FOBT01000010
Gammaproteobacteria
Halomonas caseinilytica [FOBT]
115062
115137
+
Thr
TGT
[ENA]
¡û
>W1710577213
FPAQ01000027
Gammaproteobacteria
Halomonas saccharevitans [FPAQ]
16581
16656
+
Thr
TGT
[ENA]
¡û
>W1710578473
FPBP01000009
Gammaproteobacteria
Halomonas korlensis [FPBP]
16102
16177
+
Thr
TGT
[ENA]
¡û
>W1710589837
FRAL01000009
Gammaproteobacteria
Halomonas caseinilytica sinaiensis [FRAL]
15329
15254
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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