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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.285536 (118 seq.)
>W1711005340
LQNN01000001
Gammaproteobacteria
Proteus mirabilis [LQNN]
525696
525621
-
Ala
GGC
[ENA]
¡û
>W1711010035
LQQZ01000067
Gammaproteobacteria
Proteus mirabilis [LQQZ]
2834
2909
+
Ala
GGC
[ENA]
¡û
>W1711091272
LTBK01000018
Gammaproteobacteria
Proteus mirabilis [LTBK]
2196
2271
+
Ala
GGC
[ENA]
¡û
>W1711120251
LUFT01000032
Gammaproteobacteria
Proteus mirabilis [LUFT]
439659
439584
-
Ala
GGC
[ENA]
¡û
>W1711193322
LWUL01000073
Gammaproteobacteria
Proteus mirabilis [LWUL]
59894
59969
+
Ala
GGC
[ENA]
¡û
>W1711339012
MBTY01000001
Gammaproteobacteria
Proteus mirabilis [MBTY]
2845
2920
+
Ala
GGC
[ENA]
¡û
>W1711383795
MECU01000011
Gammaproteobacteria
Shigella sp. FC130 [MECU]
357442
357367
-
Ala
GGC
[ENA]
¡û
>W1711430119
MIIW01000029
Gammaproteobacteria
Shigella sp. FC1655 [MIIW]
357551
357476
-
Ala
GGC
[ENA]
¡û
>W1711430357
MIIZ01001464
Gammaproteobacteria
Shigella sp. FC1967 [MIIZ]
9495
9420
-
Ala
GGC
[ENA]
¡û
>W1711608742
MOSG01000001
Gammaproteobacteria
Proteus sp. H24 [MOSG]
69455
69380
-
Ala
GGC
[ENA]
¡û
>W1712020021
NEYX01000023
Gammaproteobacteria
Proteus mirabilis [NEYX]
511066
510991
-
Ala
GGC
[ENA]
¡û
>W1712109038
NJFA01000001
Gammaproteobacteria
Proteus mirabilis [NJFA]
2959648
2959573
-
Ala
GGC
[ENA]
¡û
>C171103415
CP020052
Gammaproteobacteria
Proteus mirabilis AR_0059 [CP020052]
2664100
2664025
-
Ala
GGC
-
¡û
>C171121726
CP021694
Gammaproteobacteria
Proteus mirabilis AR_0155 [CP021694]
1894014
1893939
-
Ala
GGC
-
¡û
>C171124276
CP021852
Gammaproteobacteria
Proteus mirabilis AR_0156 [CP021852]
601221
601296
+
Ala
GGC
-
¡û
>WENV180118325
OARX01031763
[OARX] human gut metagenome; ENVO:feces
260
335
+
Ala
GGC
[ENA]
¢þ
>WENV180119142
OASD01013708
[OASD] human gut metagenome; ENVO:feces
766
691
-
Ala
GGC
[ENA]
¢þ
>WENV180119617
OASE01000564
[OASE] human gut metagenome; ENVO:feces
184
259
+
Ala
GGC
[ENA]
¢þ
>WENV180404374
OBSA01000331
[OBSA] human gut metagenome; ENVO:feces
184
109
-
Ala
GGC
[ENA]
¢þ
>WENV180456089
OBXQ01000146
[OBXQ] human gut metagenome; faeces
3356
3431
+
Ala
GGC
[ENA]
¢þ
>WENV180456552
OBXR01000017
[OBXR] human gut metagenome; faeces
55344
55419
+
Ala
GGC
[ENA]
¢þ
>WENV180561622
OCKZ01000177
[OCKZ] human gut metagenome; human gut
7313
7238
-
Ala
GGC
[ENA]
¢þ
>WENV180561623
OCKZ01000177
[OCKZ] human gut metagenome; human gut
7183
7108
-
Ala
GGC
[ENA]
¢þ
>WENV180564848
OCLF01004390
[OCLF] human gut metagenome; human gut
284
359
+
Ala
GGC
[ENA]
¢þ
>W141148109
AWXP01000008
Gammaproteobacteria
Proteus hauseri ZMd44 [AWXP]
306778
306703
-
Ala
GGC
[ENA]
¡û
>WENV181710651
OGPO01000691
[OGPO] human gut metagenome; faeces
6699
6624
-
Ala
GGC
[ENA]
¢þ
>WENV181734897
OGQF01013184
[OGQF] human gut metagenome; faeces
529
604
+
Ala
GGC
[ENA]
¢þ
>WENV181871682
OGWZ01000420
[OGWZ] human gut metagenome; faeces
1409
1334
-
Ala
GGC
[ENA]
¢þ
>WENV181871684
OGWZ01000420
[OGWZ] human gut metagenome; faeces
1208
1133
-
Ala
GGC
[ENA]
¢þ
>WENV181871686
OGWZ01000420
[OGWZ] human gut metagenome; faeces
1023
948
-
Ala
GGC
[ENA]
¢þ
>WENV181872488
OGWZ01003129
[OGWZ] human gut metagenome; faeces
420
345
-
Ala
GGC
[ENA]
¢þ
>WENV182001548
OHAY01006714
[OHAY] human gut metagenome; faeces
4604
4529
-
Ala
GGC
[ENA]
¢þ
>WENV182403882
OIEU01000564
[OIEU] human gut metagenome; human gut
12804
12729
-
Ala
GGC
[ENA]
¢þ
>WENV182595732
OJIY01000006
[OJIY] metagenome; faeces
488957
488882
-
Ala
GGC
[ENA]
¢þ
>WENV182658976
OJML01002220
[OJML] human gut metagenome; feces
285
360
+
Ala
GGC
[ENA]
¢þ
>WENV182798821
OJTO01000001
[OJTO] human gut metagenome; human gut
2081
2156
+
Ala
GGC
[ENA]
¢þ
>C08007494
AM942759
Gammaproteobacteria
Proteus mirabilis HI4320 [AM942759]
1956762
1956837
+
Ala
GGC
[Ensembl]
¡û
>WENV182954325
OKWA01000430
[OKWA] human gut metagenome; human gut
2103
2178
+
Ala
GGC
[ENA]
¢þ
>WENV183035052
OLFZ01001315
[OLFZ] human gut metagenome; faeces
10466
10391
-
Ala
GGC
[ENA]
¢þ
>WENV183070947
OLIS01001424
[OLIS] human gut metagenome; feces
17197
17122
-
Ala
GGC
[ENA]
¢þ
>WENV183303662
OLSQ01004407
[OLSQ] human gut metagenome; faeces
8561
8486
-
Ala
GGC
[ENA]
¢þ
>WENV183641258
OQVL01027119
[OQVL] human gut metagenome; human gut
2449
2374
-
Ala
GGC
[ENA]
¢þ
>WENV183645025
OQVQ01000581
[OQVQ] human gut metagenome; human gut
362
287
-
Ala
GGC
[ENA]
¢þ
>WENV183645026
OQVQ01000581
[OQVQ] human gut metagenome; human gut
232
157
-
Ala
GGC
[ENA]
¢þ
>WENV183647772
OQVS01002568
[OQVS] human gut metagenome; human gut
11194
11269
+
Ala
GGC
[ENA]
¢þ
>WENV183647773
OQVS01002568
[OQVS] human gut metagenome; human gut
11324
11399
+
Ala
GGC
[ENA]
¢þ
>WENV183654098
OQWA01009601
[OQWA] human gut metagenome; human gut
1771
1846
+
Ala
GGC
[ENA]
¢þ
>WENV183654099
OQWA01009601
[OQWA] human gut metagenome; human gut
1901
1976
+
Ala
GGC
[ENA]
¢þ
>WENV183772238
PPYF01016689
[PPYF] human gut metagenome; stool from patient with Crohn's disease
156211
156136
-
Ala
GGC
[ENA]
¢þ
>WENV183777747
PPYF01110292
[PPYF] human gut metagenome; stool from patient with Crohn's disease
1087
1162
+
Ala
GGC
[ENA]
¢þ
>WENV183788635
PPYF01370197
[PPYF] human gut metagenome; stool from patient with Crohn's disease
95946
95871
-
Ala
GGC
[ENA]
¢þ
>C181092326
CP023965
Gammaproteobacteria
Proteus vulgaris FDAARGOS_366 [CP023965]
2199534
2199459
-
Ala
GGC
-
¡û
>C181125725
CP026044
Gammaproteobacteria
Proteus mirabilis FDAARGOS_60 [CP026044]
1078367
1078292
-
Ala
GGC
-
¡û
>C181126076
CP026051
Gammaproteobacteria
Proteus mirabilis FDAARGOS_67 [CP026051]
1017916
1017991
+
Ala
GGC
-
¡û
>C181126476
CP026059
Gammaproteobacteria
Proteus mirabilis FDAARGOS_80 [CP026059]
2406955
2407030
+
Ala
GGC
-
¡û
>C181134897
CP026571
Gammaproteobacteria
Proteus mirabilis BC11-24 [CP026571]
2518781
2518856
+
Ala
GGC
-
¡û
>C181135066
CP026581
Gammaproteobacteria
Proteus mirabilis [CP026581]
2643351
2643426
+
Ala
GGC
-
¡û
>C181174901
CP029133
Gammaproteobacteria
Proteus mirabilis AR379 [CP029133]
760850
760775
-
Ala
GGC
-
¡û
>C181184319
CP029725
Gammaproteobacteria
Proteus mirabilis AR_0029 [CP029725]
436326
436251
-
Ala
GGC
-
¡û
>C191041993
CP026364
Gammaproteobacteria
Proteus hauseri 15H5D-4a [CP026364]
246337
246412
+
Ala
GGC
-
¡û
>C191110555
CP033736
Gammaproteobacteria
Proteus vulgaris FDAARGOS_556 [CP033736]
2304627
2304702
+
Ala
GGC
-
¡û
>W141732948
JNKL01000037
Gammaproteobacteria
Succinivibrio dextrinosolvens H5 [JNKL]
26387
26462
+
Ala
GGC
[ENA]
¡û
>W09110526
ABVP01000023
Gammaproteobacteria
Proteus penneri ATCC 35198 [ABVP]
208735
208810
+
Ala
GGC
[ENA]
¡û
>W141804922
JPIX01000001
Gammaproteobacteria
Proteus vulgaris [JPIX]
128117
128042
-
Ala
GGC
[ENA]
¡û
>W1910857224
NBUT01000004
Gammaproteobacteria
Proteus vulgaris CICC [NBUT]
389740
389665
-
Ala
GGC
[ENA]
¡û
>W1910857367
NBVR01000010
Gammaproteobacteria
Proteus alimentorum 08MAS0041 [NBVR]
6366
6291
-
Ala
GGC
[ENA]
¡û
>W1910905427
NGVR01000009
Gammaproteobacteria
Proteus columbae 08MAS2615 [NGVR]
136445
136370
-
Ala
GGC
[ENA]
¡û
>W1911137299
NOWB01000017
Gammaproteobacteria
Proteus mirabilis PM185 [NOWB]
96341
96266
-
Ala
GGC
[ENA]
¡û
>W1911580900
PENT01000001
Gammaproteobacteria
Proteus genomosp. 6 6 str. ATCC 51471 [PENT]
44467
44542
+
Ala
GGC
[ENA]
¡û
>W1911580984
PENU01000001
Gammaproteobacteria
Proteus terrae 5 str. ATCC 51470 [PENU]
387845
387770
-
Ala
GGC
[ENA]
¡û
>W1911581047
PENV01000001
Gammaproteobacteria
Proteus genomosp. 4 4 str. ATCC 51469 [PENV]
123070
123145
+
Ala
GGC
[ENA]
¡û
>W1810006240
BFCK01000190
Gammaproteobacteria
Proteus mirabilis MH13-009N [BFCK]
17934
17859
-
Ala
GGC
[ENA]
¡û
>W1810011747
BGKU01000004
Gammaproteobacteria
Proteus mirabilis TUM11569 [BGKU]
129894
129819
-
Ala
GGC
[ENA]
¡û
>W1810011860
BGKV01000023
Gammaproteobacteria
Proteus mirabilis TUM11570 [BGKV]
67633
67558
-
Ala
GGC
[ENA]
¡û
>W1810011895
BGKW01000001
Gammaproteobacteria
Proteus mirabilis TUM11571 [BGKW]
168493
168568
+
Ala
GGC
[ENA]
¡û
>W1810014433
BGMB01000020
Gammaproteobacteria
Proteus mirabilis TUM4660 [BGMB]
3804
3879
+
Ala
GGC
[ENA]
¡û
>W1810080887
PENS01000006
Gammaproteobacteria
Proteus terrae LMG 28659 [PENS]
207907
207982
+
Ala
GGC
[ENA]
¡û
>W1810080992
PENW01000026
Gammaproteobacteria
Proteus cibi FJ2001126-3 [PENW]
112881
112956
+
Ala
GGC
[ENA]
¡û
>W1810081033
PENX01000001
Gammaproteobacteria
Proteus sp. CA142267 [PENX]
808683
808758
+
Ala
GGC
[ENA]
¡û
>W1810081144
PENY01000021
Gammaproteobacteria
Proteus sp. TJ1640 [PENY]
321414
321339
-
Ala
GGC
[ENA]
¡û
>W1810081215
PENZ01000017
Gammaproteobacteria
Proteus faecis TJ1636 [PENZ]
75125
75050
-
Ala
GGC
[ENA]
¡û
>W1810107085
PGWT01000003
Gammaproteobacteria
Proteus terrae JCM 30699 [PGWT]
116445
116520
+
Ala
GGC
[ENA]
¡û
>W1810107194
PGWU01000011
Gammaproteobacteria
Proteus hauseri JCM 1668 [PGWU]
12442
12367
-
Ala
GGC
[ENA]
¡û
>W1810107907
PHFJ01000004
Gammaproteobacteria
Proteus penneri ATCC 33519 [PHFJ]
2075
2150
+
Ala
GGC
[ENA]
¡û
>W1810116003
PHNN01000001
Gammaproteobacteria
Proteus vulgaris KCTC 2579 [PHNN]
1547509
1547584
+
Ala
GGC
[ENA]
¡û
>W1810295130
PTIJ01000001
Gammaproteobacteria
Proteus mirabilis 2150/3191 [PTIJ]
158821
158746
-
Ala
GGC
[ENA]
¡û
>W1810583199
QEXA01000017
Gammaproteobacteria
Proteus faecis 08MAS1600 [QEXA]
51750
51825
+
Ala
GGC
[ENA]
¡û
>W1810595574
QGGA01000004
Gammaproteobacteria
Proteus mirabilis LBUEL-H11 [QGGA]
51375
51450
+
Ala
GGC
[ENA]
¡û
>W1810762143
QPMG01000001
Gammaproteobacteria
Proteus sp. CA142267 [QPMG]
808683
808758
+
Ala
GGC
[ENA]
¡û
>C151097054
CP012675
Gammaproteobacteria
Proteus mirabilis CYPV1 [CP012675]
2439895
2439970
+
Ala
GGC
-
¡û
>W1510651147
CVRY01000002
Gammaproteobacteria
Proteus penneri CSUR P1867 [CVRY]
286499
286574
+
Ala
GGC
[ENA]
¡û
>W1510651210
CVRZ01000002
Gammaproteobacteria
Proteus vulgaris CSUR P1868 [CVRZ]
260799
260874
+
Ala
GGC
[ENA]
¡û
>W1511362246
JSCB01000071
Gammaproteobacteria
Proteus mirabilis Pm-Oxa48 [JSCB]
4054
4129
+
Ala
GGC
[ENA]
¡û
>W1511394319
JTBA01000001
Gammaproteobacteria
Proteus mirabilis FDAARGOS_81 [JTBA]
1309929
1309854
-
Ala
GGC
[ENA]
¡û
>W1511394361
JTBB01000001
Gammaproteobacteria
Proteus mirabilis FDAARGOS_80 [JTBB]
2406808
2406883
+
Ala
GGC
[ENA]
¡û
>W1511396333
JTBW01000001
Gammaproteobacteria
Proteus mirabilis FDAARGOS_60 [JTBW]
1078346
1078271
-
Ala
GGC
[ENA]
¡û
>W1511454155
JVFU01000078
Gammaproteobacteria
Proteus mirabilis 47_PMIR [JVFU]
137797
137722
-
Ala
GGC
[ENA]
¡û
>W1511456106
JVHI01000007
Gammaproteobacteria
Proteus mirabilis 430_PMIR [JVHI]
114516
114441
-
Ala
GGC
[ENA]
¡û
>W1511456196
JVHK01000011
Gammaproteobacteria
Proteus mirabilis 429_PMIR [JVHK]
114516
114441
-
Ala
GGC
[ENA]
¡û
>W1511468414
JVUE01000093
Gammaproteobacteria
Proteus mirabilis 1313_PMIR [JVUE]
2077
2152
+
Ala
GGC
[ENA]
¡û
>W1511470135
JVWE01000072
Gammaproteobacteria
Proteus mirabilis 127_PMIR [JVWE]
138267
138192
-
Ala
GGC
[ENA]
¡û
>W1511473574
JWAP01000099
Gammaproteobacteria
Proteus mirabilis 1166_PMIR [JWAP]
2081
2156
+
Ala
GGC
[ENA]
¡û
>W1511475109
JWCS01000115
Gammaproteobacteria
Proteus mirabilis 1114_PMIR [JWCS]
98094
98019
-
Ala
GGC
[ENA]
¡û
>W1511574035
LANL01000023
Gammaproteobacteria
Proteus mirabilis 25933 GTA [LANL]
4101
4176
+
Ala
GGC
[ENA]
¡û
>C161086429
CP015347
Gammaproteobacteria
Proteus mirabilis AOUC-001 [CP015347]
1302962
1302887
-
Ala
GGC
-
¡û
>W1610540593
JSUO01000081
Gammaproteobacteria
Proteus mirabilis [JSUO]
2219
2294
+
Ala
GGC
[ENA]
¡û
>W1610610413
LGAY01000065
Gammaproteobacteria
Proteus mirabilis [LGAY]
101516
101441
-
Ala
GGC
[ENA]
¡û
>W1610855990
LQNN01000001
Gammaproteobacteria
Proteus mirabilis [LQNN]
525696
525621
-
Ala
GGC
[ENA]
¡û
>W1610858555
LQQZ01000067
Gammaproteobacteria
Proteus mirabilis [LQQZ]
2834
2909
+
Ala
GGC
[ENA]
¡û
>W1610925416
LTBK01000018
Gammaproteobacteria
Proteus mirabilis [LTBK]
2196
2271
+
Ala
GGC
[ENA]
¡û
>W1610994037
LWUL01000073
Gammaproteobacteria
Proteus mirabilis [LWUL]
59894
59969
+
Ala
GGC
[ENA]
¡û
>W1610994237
LXEN01000031
Gammaproteobacteria
Proteus myxofaciens ATCC 19692 [LXEN]
8813
8888
+
Ala
GGC
[ENA]
¡û
>W1610994853
LXEV01000030
Gammaproteobacteria
Proteus hauseri ATCC 700826 [LXEV]
56709
56784
+
Ala
GGC
[ENA]
¡û
>W1710566804
FOSF01000112
Gammaproteobacteria
Succinivibrio dextrinosolvens [FOSF]
2523
2448
-
Ala
GGC
[ENA]
¡û
>W1710576854
FPAH01000070
Gammaproteobacteria
Succinivibrio dextrinosolvens [FPAH]
180
255
+
Ala
GGC
[ENA]
¡û
>W1710602034
FUXX01000021
Gammaproteobacteria
Succinivibrio dextrinosolvens DSM 3072 [FUXX]
45901
45826
-
Ala
GGC
[ENA]
¡û
>W1710643614
JSUO01000081
Gammaproteobacteria
Proteus mirabilis [JSUO]
2219
2294
+
Ala
GGC
[ENA]
¡û
>W1710731919
LGAY01000065
Gammaproteobacteria
Proteus mirabilis [LGAY]
101516
101441
-
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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