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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.285562 (42 seq.)
>W1710792796
LJOP01000068
Cyanobacteriota
Anabaena sp. LE011-02 39865 [LJOP]
15003
15075
+
Ala
GGC
[ENA]
¡û
>W1710792840
LJOQ01000062
Cyanobacteriota
Anabaena sp. AL09 39864 [LJOQ]
11266
11338
+
Ala
GGC
[ENA]
¡û
>W1710792872
LJOS01000013
Cyanobacteriota
Anabaena sp. WA113 [LJOS]
66978
67050
+
Ala
GGC
[ENA]
¡û
>W1710792983
LJOW01000001
Cyanobacteriota
Aphanizomenon flos-aquae WA102 [LJOW]
6177
6105
-
Ala
GGC
[ENA]
¡û
>W1710793102
LJOY01000009
Cyanobacteriota
Aphanizomenon flos-aquae MDT13 [LJOY]
63856
63784
-
Ala
GGC
[ENA]
¡û
>W1710891864
LNDC01000078
Cyanobacteriota
Geitlerinema sp. PCC 9228 [LNDC]
28753
28827
+
Ala
GGC
[ENA]
¡û
>W1711092442
LTEC01000014
Cyanobacteriota
Aphanizomenon flos-aquae UKL13-PB [LTEC]
48668
48740
+
Ala
GGC
[ENA]
¡û
>W131110135
APIZ01000147
Cyanobacteriota
Dolichospermum circinale AWQC310F [APIZ]
3044
3116
+
Ala
GGC
[ENA]
¡û
>W1711510377
MLAW01000024
Cyanobacteriota
Roseofilum reptotaenium AO1-A [MLAW]
60405
60477
+
Ala
GGC
[ENA]
¡û
>C171127256
CP021983
Cyanobacteriota
Halomicronema hongdechloris C2206 [CP021983]
2258183
2258255
+
Ala
GGC
-
¡û
>w002292
AAAY02000088
Cyanobacteriota
Nostoc punctiforme [AAAY]
14312
14237
-
Ala
GGC
[ENA]
¡û
>W141038626
ALWA01000019
Cyanobacteriota
cyanobacterium PCC 7702 [ALWA]
188450
188376
-
Ala
GGC
[ENA]
¡û
>W08010806
ABRS01000135
Cyanobacteriota
Coleofasciculus chthonoplastes PCC 7420 [ABRS]
5032
4960
-
Ala
GGC
[ENA]
¡û
>W08011522
ABVJ01000001
Cyanobacteriota
Cyanothece sp. PCC 7425 [ABVJ]
144052
143980
-
Ala
GGC
[ENA]
¡û
>W141221420
AZYY01000149
Cyanobacteriota
Aphanizomenon flos-aquae NIES-81 [AZYY]
14186
14258
+
Ala
GGC
[ENA]
¡û
>ENV08002239
ABPP01005358
microbial mat metagenome; Guerrero Negro Hypersaline Mat 01; altitude 310m AMSL; sample depth 1m below water level, 0-1mm depth into the mat
197
271
+
Ala
GGC
[ENA]
¡û
>ENV08002255
ABPP01009447
microbial mat metagenome; Guerrero Negro Hypersaline Mat 01; altitude 310m AMSL; sample depth 1m below water level, 0-1mm depth into the mat
466
392
-
Ala
GGC
[ENA]
¡û
>ENV08002286
ABPQ01003775
microbial mat metagenome; Guerrero Negro Hypersaline Mat 02; altitude 310m AMSL; sample depth 1m below water level, 1-2mm depth into the mat
798
724
-
Ala
GGC
[ENA]
¡û
>WENV171003467
NNBU01000047
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
17238
17310
+
Ala
GGC
[ENA]
¢þ
>WENV171003689
NNBV01000194
[NNBV] plant metagenome; symbiotic tissue sample KVS11
27933
28005
+
Ala
GGC
[ENA]
¢þ
>C181105237
CP024785
Cyanobacteriota
Nostoc flagelliforme CCNUN1 [CP024785]
6123783
6123857
+
Ala
GGC
-
¡û
>C181137811
CP026692
Cyanobacteriota
Nostoc sp. 'Lobaria pulmonaria [5183] cyanobiont' [CP026692]
5354367
5354441
+
Ala
GGC
-
¡û
>C191083041
CP031941
Cyanobacteriota
Nostoc sphaeroides Kutzing En [CP031941]
3981924
3981996
+
Ala
GGC
-
¡û
>W1910020520
BDUD01000001
Cyanobacteriota
Nostoc commune NIES-4072 [BDUD]
6561524
6561596
+
Ala
GGC
[ENA]
¡û
>C09103577
CP001344
Cyanobacteriota
Cyanothece sp. PCC 7425 [CP001344]
1986573
1986645
+
Ala
GGC
[Ensembl]
¡û
>W1910646652
LWSY01000110
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
234599
234671
+
Ala
GGC
[ENA]
¡û
>W1910792695
MRBZ01000180
Cyanobacteriota
Nostoc calcicola FACHB-389 [MRBZ]
3555
3483
-
Ala
GGC
[ENA]
¡û
>W1911118755
NOLJ01000007
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 210A [NOLJ]
239280
239354
+
Ala
GGC
[ENA]
¡û
>W1911118798
NOLK01000007
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
64915
64843
-
Ala
GGC
[ENA]
¡û
>C151082980
CP011456
Cyanobacteriota
Anabaena sp. WA102 [CP011456]
833584
833512
-
Ala
GGC
-
¡û
>W1511108019
JJML01000043
Cyanobacteriota
Neosynechococcus sphagnicola sy1 CAUP A 1101 [JJML]
26565
26637
+
Ala
GGC
[ENA]
¡û
>W1511364892
JSDP01000055
Cyanobacteriota
Aphanizomenon flos-aquae 2012/KM1/D3 [JSDP]
6633
6561
-
Ala
GGC
[ENA]
¡û
>C131004492
CP003594
Cyanobacteriota
Synechococcus sp. PCC 7502 [CP003594]
2286958
2286886
-
Ala
GGC
[Ensembl]
¡û
>W1610656721
LJOP01000068
Cyanobacteriota
Anabaena sp. LE011-02 39865 [LJOP]
15003
15075
+
Ala
GGC
[ENA]
¡û
>W1610656765
LJOQ01000062
Cyanobacteriota
Anabaena sp. AL09 39864 [LJOQ]
11266
11338
+
Ala
GGC
[ENA]
¡û
>W1610656836
LJOS01000013
Cyanobacteriota
Anabaena sp. WA113 [LJOS]
66978
67050
+
Ala
GGC
[ENA]
¡û
>W1610656864
LJOT01000011
Cyanobacteriota
Anabaena sp. CRKS33 [LJOT]
31134
31209
+
Ala
GGC
[ENA]
¡û
>W1610656987
LJOW01000001
Cyanobacteriota
Aphanizomenon flos-aquae WA102 [LJOW]
6177
6105
-
Ala
GGC
[ENA]
¡û
>W1610657106
LJOY01000009
Cyanobacteriota
Aphanizomenon flos-aquae MDT13 [LJOY]
63856
63784
-
Ala
GGC
[ENA]
¡û
>W1610926480
LTEC01000014
Cyanobacteriota
Aphanizomenon flos-aquae UKL13-PB [LTEC]
48668
48740
+
Ala
GGC
[ENA]
¡û
>W1710087979
BDUB01000001
Cyanobacteriota
Nodularia sp. NIES-3585 [BDUB]
3673769
3673843
+
Ala
GGC
[ENA]
¡û
>W1710698105
LAZT01000029
Cyanobacteriota
Halomicronema hongdechloris C2206 [LAZT]
84707
84779
+
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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