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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.285563 (83 seq.)
>W1710782889
LJFJ01000005
Bacillota
Limosilactobacillus fermentum [LJFJ]
678866
678940
+
Arg
CCT
[ENA]
¡û
>W1710801579
LJWZ01000025
Bacillota
Limosilactobacillus fermentum [LJWZ]
936
862
-
Arg
CCT
[ENA]
¡û
>W1711185541
LWNM01000071
Bacillota
Lactobacillus sp. HMSC24D01 [LWNM]
25774
25848
+
Arg
CCT
[ENA]
¡û
>W131203199
ASXU01000181
Bacillota
Limosilactobacillus fermentum FTDC8312 [ASXU]
7646
7720
+
Arg
CCT
[ENA]
¡û
>W1711487611
MKGE01000009
Bacillota
Limosilactobacillus fermentum [MKGE]
21143
21069
-
Arg
CCT
[ENA]
¡û
>W1712106900
NIWV01000008
Bacillota
Limosilactobacillus fermentum [NIWV]
24867
24941
+
Arg
CCT
[ENA]
¡û
>C171057926
CP017151
Bacillota
Limosilactobacillus fermentum NCC2970 [CP017151]
457152
457078
-
Arg
CCT
-
¡û
>C171088272
CP019030
Bacillota
Limosilactobacillus fermentum SNUV175 [CP019030]
1536713
1536787
+
Arg
CCT
-
¡û
>C171115652
CP021104
Bacillota
Limosilactobacillus fermentum FTDC 8312 [CP021104]
1708853
1708779
-
Arg
CCT
-
¡û
>C171123317
CP021790
Bacillota
Limosilactobacillus fermentum LAC FRN-92 [CP021790]
292893
292819
-
Arg
CCT
-
¡û
>WENV180334085
OBLF01004629
[OBLF] metagenome; feces
1930
2004
+
Arg
CCT
[ENA]
¢þ
>WENV180410574
OBUX01000326
[OBUX] human gut metagenome; faeces
19312
19238
-
Arg
CCT
[ENA]
¢þ
>WENV180442277
OBWW01029110
[OBWW] human gut metagenome; faeces
515
441
-
Arg
CCT
[ENA]
¢þ
>W141092504
AVAB01000001
Bacillota
Limosilactobacillus fermentum MTCC 8711 [AVAB]
1628496
1628422
-
Arg
CCT
[ENA]
¡û
>W141094648
AVCT01000210
Bacillota
Limosilactobacillus fermentum 3872 [AVCT]
15450
15524
+
Arg
CCT
[ENA]
¡û
>WENV181394330
OFRY01055999
[OFRY] human gut metagenome; human gut
430
504
+
Arg
CCT
[ENA]
¢þ
>WENV181469114
OGES01057571
[OGES] metagenome; Human gut stool
599
525
-
Arg
CCT
[ENA]
¢þ
>WENV181473970
OGFC01000808
[OGFC] metagenome; Human gut stool
599
525
-
Arg
CCT
[ENA]
¢þ
>W141148219
AWXS01000187
Bacillota
Limosilactobacillus fermentum Lf1 [AWXS]
9733
9659
-
Arg
CCT
[ENA]
¡û
>WENV181506097
OGGM01000103
[OGGM] metagenome; Human gut stool
65458
65532
+
Arg
CCT
[ENA]
¢þ
>WENV181519150
OGHB01009066
[OGHB] metagenome; Human gut stool
1320
1246
-
Arg
CCT
[ENA]
¢þ
>WENV181553048
OGIQ01001096
[OGIQ] metagenome; Human gut stool
6867
6793
-
Arg
CCT
[ENA]
¢þ
>WENV181555775
OGIU01000177
[OGIU] metagenome; Human gut stool
3131
3057
-
Arg
CCT
[ENA]
¢þ
>WENV181564866
OGJH01052012
[OGJH] metagenome; Human gut stool
186
112
-
Arg
CCT
[ENA]
¢þ
>WENV181588155
OGKH01000958
[OGKH] metagenome; Human gut stool
598
524
-
Arg
CCT
[ENA]
¢þ
>W141180741
AYHA01000072
Bacillota
Limosilactobacillus fermentum NB-22 [AYHA]
598
524
-
Arg
CCT
[ENA]
¡û
>WENV182404214
OIEU01006251
[OIEU] human gut metagenome; human gut
874
800
-
Arg
CCT
[ENA]
¢þ
>WENV182954369
OKWA01000526
[OKWA] human gut metagenome; human gut
8028
8102
+
Arg
CCT
[ENA]
¢þ
>C08006074
AP008937
Bacillota
Limosilactobacillus fermentum IFO 3956 [AP008937]
1627857
1627783
-
Arg
CCT
[Ensembl]
¡û
>WENV182982638
OKZC01025495
[OKZC] human gut metagenome; human gut
390
316
-
Arg
CCT
[ENA]
¢þ
>WENV183182770
OLPK01001182
[OLPK] human gut metagenome; faeces
2941
3015
+
Arg
CCT
[ENA]
¢þ
>WENV183217439
OLQI01000323
[OLQI] human gut metagenome; faeces
37965
38039
+
Arg
CCT
[ENA]
¢þ
>PL191001220
CP033372
Firmicutes
Lactobacillus fermentum DR9 plasmid:unnamed1 (CP033372)
248129
248203
+
Arg
CCT
[ENA]
¡û
>C181004047
AP017973
Bacillota
Limosilactobacillus fermentum MTCC 25067 [AP017973]
1502638
1502564
-
Arg
CCT
-
¡û
>C181054778
CP021964
Bacillota
Limosilactobacillus fermentum CBA7106 [CP021964]
1532568
1532494
-
Arg
CCT
-
¡û
>C181196731
CP031195
Bacillota
Limosilactobacillus fermentum LDTM 7301 [CP031195]
1062262
1062188
-
Arg
CCT
-
¡û
>C181226951
LT906621
Bacillota
Limosilactobacillus fermentum IMDO 130101 [LT906621]
1593079
1593005
-
Arg
CCT
-
¡û
>C191012453
CP016803
Bacillota
Limosilactobacillus fermentum SK152 [CP016803]
1693620
1693694
+
Arg
CCT
-
¡û
>C191119224
CP034099
Bacillota
Limosilactobacillus fermentum LMT2-75 [CP034099]
1330844
1330918
+
Arg
CCT
-
¡û
>C191121377
CP034193
Bacillota
Limosilactobacillus fermentum YL-11 [CP034193]
1463778
1463704
-
Arg
CCT
-
¡û
>C191134191
CP035054
Bacillota
Limosilactobacillus fermentum SRCM103285 [CP035054]
543525
543599
+
Arg
CCT
-
¡û
>C191134251
CP035055
Bacillota
Limosilactobacillus fermentum SRCM 103290 [CP035055]
1912377
1912451
+
Arg
CCT
-
¡û
>W09122619
ACGI01000007
Bacillota
Limosilactobacillus fermentum ATCC 14931 [ACGI]
25759
25833
+
Arg
CCT
[ENA]
¡û
>W141805395
JPKN01000378
Bacillota
Lacticaseibacillus paracasei casei [JPKN]
13413
13487
+
Arg
CCT
[ENA]
¡û
>W1910181262
BJLV01000016
Bacillota
Limosilactobacillus fermentum NBRC 3959 [BJLV]
10912
10838
-
Arg
CCT
[ENA]
¡û
>W1910374066
FUHY01000053
Bacillota
Limosilactobacillus fermentum S13 [FUHY]
29684
29758
+
Arg
CCT
[ENA]
¡û
>W1910374087
FUHZ01000009
Bacillota
Limosilactobacillus fermentum S6 [FUHZ]
29684
29758
+
Arg
CCT
[ENA]
¡û
>W1910954315
NJPQ01000016
Bacillota
Limosilactobacillus fermentum SHI-2 [NJPQ]
19357
19283
-
Arg
CCT
[ENA]
¡û
>W1911533693
OKQY01000006
Bacillota
Limosilactobacillus fermentum CECT 9269 [OKQY]
50508
50434
-
Arg
CCT
[ENA]
¡û
>W1810058963
PDKX01000016
Bacillota
Limosilactobacillus fermentum NCDC 400 [PDKX]
26085
26159
+
Arg
CCT
[ENA]
¡û
>W1810090599
PGGE01000017
Bacillota
Limosilactobacillus fermentum 103 [PGGE]
16068
15994
-
Arg
CCT
[ENA]
¡û
>W1810090652
PGGI01000026
Bacillota
Limosilactobacillus fermentum 279 [PGGI]
732
658
-
Arg
CCT
[ENA]
¡û
>W1810090685
PGGJ01000027
Bacillota
Limosilactobacillus fermentum 311 [PGGJ]
3571
3497
-
Arg
CCT
[ENA]
¡û
>W1810190826
PKKD01000023
Bacillota
Limosilactobacillus fermentum UMB0187 [PKKD]
3630
3556
-
Arg
CCT
[ENA]
¡û
>W1810196532
PNBB01000011
Bacillota
Limosilactobacillus fermentum LfU21 [PNBB]
16072
15998
-
Arg
CCT
[ENA]
¡û
>W1810223760
POTQ01000004
Bacillota
Limosilactobacillus fermentum CRL1446 [POTQ]
61738
61812
+
Arg
CCT
[ENA]
¡û
>W1810297043
PTLW01000007
Bacillota
Limosilactobacillus fermentum MD IIE-4657 [PTLW]
38264
38338
+
Arg
CCT
[ENA]
¡û
>W1810473338
QAHK01000012
Bacillota
Limosilactobacillus fermentum DS13_7 [QAHK]
21876
21802
-
Arg
CCT
[ENA]
¡û
>W1810489176
QAZV01000047
Bacillota
Limosilactobacillus fermentum DS19_7 [QAZV]
9942
10016
+
Arg
CCT
[ENA]
¡û
>W1810695521
QLNN01000069
Bacillota
Limosilactobacillus fermentum LF2 [QLNN]
3198
3124
-
Arg
CCT
[ENA]
¡û
>W1810705594
QMJL01000012
Bacillota
Limosilactobacillus fermentum KMB_612 [QMJL]
27587
27661
+
Arg
CCT
[ENA]
¡û
>W1810705639
QMJM01000012
Bacillota
Limosilactobacillus fermentum KMB_613 [QMJM]
29221
29295
+
Arg
CCT
[ENA]
¡û
>W1810811190
QRYA01000007
Bacillota
Limosilactobacillus fermentum AF16-22LB [QRYA]
25821
25895
+
Arg
CCT
[ENA]
¡û
>W1810811845
QRYM01000011
Bacillota
Limosilactobacillus fermentum AF15-40LB [QRYM]
21102
21028
-
Arg
CCT
[ENA]
¡û
>W1810814641
QSAL01000002
Bacillota
Limosilactobacillus fermentum AF11-4-H [QSAL]
136369
136443
+
Arg
CCT
[ENA]
¡û
>C151084271
CP011536
Bacillota
Limosilactobacillus fermentum 3872 [CP011536]
1791287
1791213
-
Arg
CCT
-
¡û
>W10103380
ACQG01000036
Bacillota
Limosilactobacillus fermentum 28-3-CHN [ACQG]
26322
26396
+
Arg
CCT
[ENA]
¡û
>W1510021764
BCAH01000004
Bacillota
Limosilactobacillus gorillae KZ01 [BCAH]
29865
29791
-
Arg
CCT
[ENA]
¡û
>W1510022537
CBZV010000012
Bacillota
Limosilactobacillus fermentum 222 [CBZV]
22102
22028
-
Arg
CCT
[ENA]
¡û
>C10108374
CP002033
Bacillota
Limosilactobacillus fermentum CECT 5716 [CP002033]
1629037
1628963
-
Arg
CCT
[Ensembl]
¡û
>W11103536
ACQG01000036
Bacillota
Limosilactobacillus fermentum 28-3-CHN [ACQG]
26322
26396
+
Arg
CCT
[ENA]
¡û
>W1511443753
JUTH01000012
Bacillota
Limosilactobacillus fermentum 779_LFER [JUTH]
11898
11972
+
Arg
CCT
[ENA]
¡û
>W1511567816
LAIK01000002
Bacillota
Limosilactobacillus fermentum LfQi6 [LAIK]
57711
57637
-
Arg
CCT
[ENA]
¡û
>W1511589457
LBDG01000002
Bacillota
Limosilactobacillus fermentum 39 [LBDG]
1813
1739
-
Arg
CCT
[ENA]
¡û
>W1511589542
LBDH01000023
Bacillota
Limosilactobacillus fermentum 90 TC-4 [LBDH]
3661
3587
-
Arg
CCT
[ENA]
¡û
>C161077691
CP014787
Bacillota
Limosilactobacillus oris J-1 [CP014787]
2352439
2352513
+
Arg
CCT
-
¡û
>W1610083197
CBUR010000051
Bacillota
Limosilactobacillus fermentum L930BB [CBUR]
3168
3242
+
Arg
CCT
[ENA]
¡û
>C131016194
CP005958
Bacillota
Limosilactobacillus fermentum F-6 [CP005958]
1585811
1585737
-
Arg
CCT
[Ensembl]
¡û
>W1610527916
JQAU01000010
Bacillota
Limosilactobacillus fermentum [JQAU]
37954
38028
+
Arg
CCT
[ENA]
¡û
>W1610647397
LJFJ01000005
Bacillota
Limosilactobacillus fermentum [LJFJ]
678866
678940
+
Arg
CCT
[ENA]
¡û
>W1610665536
LJWZ01000025
Bacillota
Limosilactobacillus fermentum [LJWZ]
936
862
-
Arg
CCT
[ENA]
¡û
>W1710088317
CBUR010000051
Bacillota
Limosilactobacillus fermentum L930BB [CBUR]
3168
3242
+
Arg
CCT
[ENA]
¡û
>W1710629547
JQAU01000010
Bacillota
Limosilactobacillus fermentum [JQAU]
37954
38028
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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