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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.285564 (71 seq.)
>W1710782896
LJFJ01000006
Bacillota
Limosilactobacillus fermentum [LJFJ]
75519
75593
+
Asn
GTT
[ENA]
¡û
>W1710801552
LJWZ01000011
Bacillota
Limosilactobacillus fermentum [LJWZ]
104
178
+
Asn
GTT
[ENA]
¡û
>W1711487636
MKGE01000056
Bacillota
Limosilactobacillus fermentum [MKGE]
3094
3020
-
Asn
GTT
[ENA]
¡û
>W1712106938
NIWV01000064
Bacillota
Limosilactobacillus fermentum [NIWV]
6576
6502
-
Asn
GTT
[ENA]
¡û
>C171057889
CP017151
Bacillota
Limosilactobacillus fermentum NCC2970 [CP017151]
1183893
1183967
+
Asn
GTT
-
¡û
>C171088292
CP019030
Bacillota
Limosilactobacillus fermentum SNUV175 [CP019030]
739394
739320
-
Asn
GTT
-
¡û
>C171115615
CP021104
Bacillota
Limosilactobacillus fermentum FTDC 8312 [CP021104]
308062
308136
+
Asn
GTT
-
¡û
>C171123288
CP021790
Bacillota
Limosilactobacillus fermentum LAC FRN-92 [CP021790]
2022841
2022915
+
Asn
GTT
-
¡û
>C171123293
CP021790
Bacillota
Limosilactobacillus fermentum LAC FRN-92 [CP021790]
1950073
1949999
-
Asn
GTT
-
¡û
>WENV180334961
OBLF01109626
[OBLF] metagenome; feces
382
308
-
Asn
GTT
[ENA]
¢þ
>WENV180410799
OBUX01007036
[OBUX] human gut metagenome; faeces
812
738
-
Asn
GTT
[ENA]
¢þ
>W141092467
AVAB01000001
Bacillota
Limosilactobacillus fermentum MTCC 8711 [AVAB]
278777
278851
+
Asn
GTT
[ENA]
¡û
>WENV181458448
OGEJ01031436
[OGEJ] metagenome; Human gut stool
415
489
+
Asn
GTT
[ENA]
¢þ
>WENV181474447
OGFC01024857
[OGFC] metagenome; Human gut stool
749
675
-
Asn
GTT
[ENA]
¢þ
>W141148175
AWXS01000029
Bacillota
Limosilactobacillus fermentum Lf1 [AWXS]
62970
63044
+
Asn
GTT
[ENA]
¡û
>WENV181506523
OGGM01009886
[OGGM] metagenome; Human gut stool
749
675
-
Asn
GTT
[ENA]
¢þ
>WENV181519172
OGHB01013371
[OGHB] metagenome; Human gut stool
415
489
+
Asn
GTT
[ENA]
¢þ
>WENV181556240
OGIU01006032
[OGIU] metagenome; Human gut stool
60
134
+
Asn
GTT
[ENA]
¢þ
>WENV181564627
OGJH01014359
[OGJH] metagenome; Human gut stool
1542
1468
-
Asn
GTT
[ENA]
¢þ
>WENV181588317
OGKH01011829
[OGKH] metagenome; Human gut stool
749
675
-
Asn
GTT
[ENA]
¢þ
>W141180736
AYHA01000027
Bacillota
Limosilactobacillus fermentum NB-22 [AYHA]
59
133
+
Asn
GTT
[ENA]
¡û
>WENV181933612
OGYS01012932
[OGYS] human gut metagenome; faeces
415
489
+
Asn
GTT
[ENA]
¢þ
>C08006037
AP008937
Bacillota
Limosilactobacillus fermentum IFO 3956 [AP008937]
278569
278643
+
Asn
GTT
[Ensembl]
¡û
>C181004010
AP017973
Bacillota
Limosilactobacillus fermentum MTCC 25067 [AP017973]
277448
277522
+
Asn
GTT
-
¡û
>C181054741
CP021964
Bacillota
Limosilactobacillus fermentum CBA7106 [CP021964]
283473
283547
+
Asn
GTT
-
¡û
>C181196714
CP031195
Bacillota
Limosilactobacillus fermentum LDTM 7301 [CP031195]
1831061
1831135
+
Asn
GTT
-
¡û
>C181226914
LT906621
Bacillota
Limosilactobacillus fermentum IMDO 130101 [LT906621]
287563
287637
+
Asn
GTT
-
¡û
>C191012472
CP016803
Bacillota
Limosilactobacillus fermentum SK152 [CP016803]
930940
930866
-
Asn
GTT
-
¡û
>C191105223
CP033371
Bacillota
Limosilactobacillus fermentum DR9 [CP033371]
698616
698542
-
Asn
GTT
-
¡û
>C191119245
CP034099
Bacillota
Limosilactobacillus fermentum LMT2-75 [CP034099]
480042
479968
-
Asn
GTT
-
¡û
>C191121340
CP034193
Bacillota
Limosilactobacillus fermentum YL-11 [CP034193]
251072
251146
+
Asn
GTT
-
¡û
>C191134211
CP035054
Bacillota
Limosilactobacillus fermentum SRCM103285 [CP035054]
1871955
1871881
-
Asn
GTT
-
¡û
>C191134268
CP035055
Bacillota
Limosilactobacillus fermentum SRCM 103290 [CP035055]
1152884
1152810
-
Asn
GTT
-
¡û
>W09122623
ACGI01000014
Bacillota
Limosilactobacillus fermentum ATCC 14931 [ACGI]
792
718
-
Asn
GTT
[ENA]
¡û
>W141805368
JPKN01000272
Bacillota
Lacticaseibacillus paracasei casei [JPKN]
155
229
+
Asn
GTT
[ENA]
¡û
>W1910181295
BJLV01000124
Bacillota
Limosilactobacillus fermentum NBRC 3959 [BJLV]
855
781
-
Asn
GTT
[ENA]
¡û
>W1910954333
NJPQ01000086
Bacillota
Limosilactobacillus fermentum SHI-2 [NJPQ]
94
168
+
Asn
GTT
[ENA]
¡û
>W1911533719
OKQY01000097
Bacillota
Limosilactobacillus fermentum CECT 9269 [OKQY]
1087
1013
-
Asn
GTT
[ENA]
¡û
>W1810059007
PDKX01000099
Bacillota
Limosilactobacillus fermentum NCDC 400 [PDKX]
3752
3826
+
Asn
GTT
[ENA]
¡û
>W1810090613
PGGE01000110
Bacillota
Limosilactobacillus fermentum 103 [PGGE]
131
205
+
Asn
GTT
[ENA]
¡û
>W1810090657
PGGI01000058
Bacillota
Limosilactobacillus fermentum 279 [PGGI]
132
206
+
Asn
GTT
[ENA]
¡û
>W1810090706
PGGJ01000096
Bacillota
Limosilactobacillus fermentum 311 [PGGJ]
131
205
+
Asn
GTT
[ENA]
¡û
>W1810190864
PKKD01000097
Bacillota
Limosilactobacillus fermentum UMB0187 [PKKD]
96
170
+
Asn
GTT
[ENA]
¡û
>W1810196549
PNBB01000071
Bacillota
Limosilactobacillus fermentum LfU21 [PNBB]
291
365
+
Asn
GTT
[ENA]
¡û
>W1810223799
POTQ01000030
Bacillota
Limosilactobacillus fermentum CRL1446 [POTQ]
13151
13077
-
Asn
GTT
[ENA]
¡û
>W1810297089
PTLW01000072
Bacillota
Limosilactobacillus fermentum MD IIE-4657 [PTLW]
104
178
+
Asn
GTT
[ENA]
¡û
>W1810473349
QAHK01000057
Bacillota
Limosilactobacillus fermentum DS13_7 [QAHK]
8298
8224
-
Asn
GTT
[ENA]
¡û
>W1810489182
QAZV01000069
Bacillota
Limosilactobacillus fermentum DS19_7 [QAZV]
3744
3670
-
Asn
GTT
[ENA]
¡û
>W1810695529
QLNN01000154
Bacillota
Limosilactobacillus fermentum LF2 [QLNN]
95
169
+
Asn
GTT
[ENA]
¡û
>W1810705689
QMJM01000124
Bacillota
Limosilactobacillus fermentum KMB_613 [QMJM]
38
112
+
Asn
GTT
[ENA]
¡û
>W1810811230
QRYA01000067
Bacillota
Limosilactobacillus fermentum AF16-22LB [QRYA]
51
125
+
Asn
GTT
[ENA]
¡û
>W1810811817
QRYM01000001
Bacillota
Limosilactobacillus fermentum AF15-40LB [QRYM]
51
125
+
Asn
GTT
[ENA]
¡û
>W1810814642
QSAL01000003
Bacillota
Limosilactobacillus fermentum AF11-4-H [QSAL]
260
334
+
Asn
GTT
[ENA]
¡û
>C151084234
CP011536
Bacillota
Limosilactobacillus fermentum 3872 [CP011536]
301188
301262
+
Asn
GTT
-
¡û
>W10103420
ACQG01000101
Bacillota
Limosilactobacillus fermentum 28-3-CHN [ACQG]
5
79
+
Asn
GTT
[ENA]
¡û
>W1510021773
BCAH01000014
Bacillota
Limosilactobacillus gorillae KZ01 [BCAH]
32102
32028
-
Asn
GTT
[ENA]
¡û
>W1510022563
CBZV010000053
Bacillota
Limosilactobacillus fermentum 222 [CBZV]
17
91
+
Asn
GTT
[ENA]
¡û
>C10108337
CP002033
Bacillota
Limosilactobacillus fermentum CECT 5716 [CP002033]
279041
279115
+
Asn
GTT
[Ensembl]
¡û
>W11103576
ACQG01000101
Bacillota
Limosilactobacillus fermentum 28-3-CHN [ACQG]
5
79
+
Asn
GTT
[ENA]
¡û
>W1511443761
JUTH01000091
Bacillota
Limosilactobacillus fermentum 779_LFER [JUTH]
246
172
-
Asn
GTT
[ENA]
¡û
>W1511567822
LAIK01000005
Bacillota
Limosilactobacillus fermentum LfQi6 [LAIK]
261004
260930
-
Asn
GTT
[ENA]
¡û
>W1511589496
LBDG01000043
Bacillota
Limosilactobacillus fermentum 39 [LBDG]
4615
4541
-
Asn
GTT
[ENA]
¡û
>W1511589549
LBDH01000079
Bacillota
Limosilactobacillus fermentum 90 TC-4 [LBDH]
2978
2904
-
Asn
GTT
[ENA]
¡û
>C161077715
CP014787
Bacillota
Limosilactobacillus oris J-1 [CP014787]
1627389
1627315
-
Asn
GTT
-
¡û
>W1610083153
CBUR010000006
Bacillota
Limosilactobacillus fermentum L930BB [CBUR]
96
170
+
Asn
GTT
[ENA]
¡û
>C131016157
CP005958
Bacillota
Limosilactobacillus fermentum F-6 [CP005958]
277514
277588
+
Asn
GTT
[Ensembl]
¡û
>W1610527955
JQAU01000072
Bacillota
Limosilactobacillus fermentum [JQAU]
1203
1129
-
Asn
GTT
[ENA]
¡û
>W1610647404
LJFJ01000006
Bacillota
Limosilactobacillus fermentum [LJFJ]
75519
75593
+
Asn
GTT
[ENA]
¡û
>W1610665509
LJWZ01000011
Bacillota
Limosilactobacillus fermentum [LJWZ]
104
178
+
Asn
GTT
[ENA]
¡û
>W1710088273
CBUR010000006
Bacillota
Limosilactobacillus fermentum L930BB [CBUR]
96
170
+
Asn
GTT
[ENA]
¡û
>W1710629586
JQAU01000072
Bacillota
Limosilactobacillus fermentum [JQAU]
1203
1129
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK