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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.285610 (71 seq.)
>W1710786301
LJIV01000020
Bacillota
Leuconostoc lactis [LJIV]
306
232
-
Phe
GAA
[ENA]
¡û
>W1711627412
MPLL01000008
Bacillota
Leuconostoc lactis [MPLL]
1331
1405
+
Phe
GAA
[ENA]
¡û
>W1711627504
MPLN01000007
Bacillota
Leuconostoc lactis [MPLN]
1331
1405
+
Phe
GAA
[ENA]
¡û
>W1711999798
NDXG01000012
Bacillota
Leuconostoc citreum [NDXG]
84440
84366
-
Phe
GAA
[ENA]
¡û
>C171047458
CP016329
Bacillota
Leuconostoc garlicum KFRI01 [CP016329]
541844
541918
+
Phe
GAA
-
¡û
>C171047474
CP016329
Bacillota
Leuconostoc garlicum KFRI01 [CP016329]
624924
624998
+
Phe
GAA
-
¡û
>WENV180299210
OBJB01003217
[OBJB] human gut metagenome; human gut
313
387
+
Phe
GAA
[ENA]
¢þ
>WENV180503493
OCAM01032424
[OCAM] human gut metagenome; faeces
167
93
-
Phe
GAA
[ENA]
¢þ
>WENV181427739
OGCT01001779
[OGCT] metagenome; Human gut stool
675
749
+
Phe
GAA
[ENA]
¢þ
>WENV181438174
OGDH01015105
[OGDH] metagenome; Human gut stool
263
189
-
Phe
GAA
[ENA]
¢þ
>WENV182610626
OJJW01000042
[OJJW] metagenome; faeces
46682
46608
-
Phe
GAA
[ENA]
¢þ
>WENV182629226
OJKR01045094
[OJKR] metagenome; surface
150
224
+
Phe
GAA
[ENA]
¢þ
>C08006002
DQ489736
Bacillota
Leuconostoc citreum KM20 [DQ489736]
1771160
1771086
-
Phe
GAA
[Ensembl]
¡û
>C08006018
DQ489736
Bacillota
Leuconostoc citreum KM20 [DQ489736]
1680196
1680122
-
Phe
GAA
[Ensembl]
¡û
>C191155345
CP037939
Bacillota
Leuconostoc kimchii NKJ218 [CP037939]
1894914
1894840
-
Phe
GAA
-
¡û
>C191155361
CP037939
Bacillota
Leuconostoc kimchii NKJ218 [CP037939]
1763735
1763661
-
Phe
GAA
-
¡û
>W141695537
JMEA01000027
Bacillota
Leuconostoc lactis [JMEA]
1192
1266
+
Phe
GAA
[ENA]
¡û
>W1910181845
BJMJ01000045
Bacillota
Leuconostoc lactis NBRC 12455 [BJMJ]
318
244
-
Phe
GAA
[ENA]
¡û
>W1910822001
MWJP01000001
Bacillota
Leuconostoc citreum CW28 [MWJP]
906707
906633
-
Phe
GAA
[ENA]
¡û
>W1910822017
MWJP01000001
Bacillota
Leuconostoc citreum CW28 [MWJP]
816605
816531
-
Phe
GAA
[ENA]
¡û
>W1911177207
NQLF01000001
Bacillota
Leuconostoc lactis CCK940 [NQLF]
1705216
1705142
-
Phe
GAA
[ENA]
¡û
>W1911177223
NQLF01000001
Bacillota
Leuconostoc lactis CCK940 [NQLF]
1623133
1623059
-
Phe
GAA
[ENA]
¡û
>W1911283579
NTJC01000002
Bacillota
Leuconostoc citreum TR116 [NTJC]
1335
1409
+
Phe
GAA
[ENA]
¡û
>W1911495499
OBMW01000033
Bacillota
Leuconostoc gasicomitatum subsp. gasicomitatum MFPA44A1401 [OBMW]
323
249
-
Phe
GAA
[ENA]
¡û
>W1911541751
OOIO01000012
Bacillota
Leuconostoc carnosum MFPA29A1405 [OOIO]
1095
1169
+
Phe
GAA
[ENA]
¡û
>W1911631658
PUFH01000001
Bacillota
Leuconostoc citreum ATCC 49370 [PUFH]
84426
84352
-
Phe
GAA
[ENA]
¡û
>W1911631678
PUFH01000003
Bacillota
Leuconostoc citreum ATCC 49370 [PUFH]
1303
1377
+
Phe
GAA
[ENA]
¡û
>W1911631691
PUFH01000004
Bacillota
Leuconostoc citreum ATCC 49370 [PUFH]
1102
1176
+
Phe
GAA
[ENA]
¡û
>W1510046246
CCNG01000016
Bacillota
Leuconostoc citreum [CCNG]
114567
114493
-
Phe
GAA
[ENA]
¡û
>W1510046262
CCNG01000016
Bacillota
Leuconostoc citreum [CCNG]
17460
17386
-
Phe
GAA
[ENA]
¡û
>W1510046308
CCNH01000010
Bacillota
Leuconostoc citreum [CCNH]
190447
190373
-
Phe
GAA
[ENA]
¡û
>C10108468
CP001758
Bacillota
Leuconostoc kimchii IMSNU 11154 [CP001758]
1132723
1132797
+
Phe
GAA
[Ensembl]
¡û
>C10108484
CP001758
Bacillota
Leuconostoc kimchii IMSNU 11154 [CP001758]
1263901
1263975
+
Phe
GAA
[Ensembl]
¡û
>C11112645
CP002898
Bacillota
Leuconostoc sp. C2 [CP002898]
1292400
1292326
-
Phe
GAA
[Ensembl]
¡û
>C11112661
CP002898
Bacillota
Leuconostoc sp. C2 [CP002898]
1161220
1161146
-
Phe
GAA
[Ensembl]
¡û
>C11112822
FN822744
Bacillota
Leuconostoc gasicomitatum LMG 18811 type strain: LMG 18811 [FN822744]
1928337
1928263
-
Phe
GAA
[Ensembl]
¡û
>C11112838
FN822744
Bacillota
Leuconostoc gasicomitatum LMG 18811 type strain: LMG 18811 [FN822744]
1772378
1772304
-
Phe
GAA
[Ensembl]
¡û
>W1511468952
JVUU01000022
Bacillota
Leuconostoc citreum subsp. gasicomitatum 1301_LGAS [JVUU]
87
161
+
Phe
GAA
[ENA]
¡û
>W1511468959
JVUU01000023
Bacillota
Leuconostoc citreum subsp. gasicomitatum 1301_LGAS [JVUU]
153505
153431
-
Phe
GAA
[ENA]
¡û
>W1511468990
JVUU01000034
Bacillota
Leuconostoc citreum subsp. gasicomitatum 1301_LGAS [JVUU]
1271
1345
+
Phe
GAA
[ENA]
¡û
>W1511469015
JVUV01000029
Bacillota
Leuconostoc citreum 1300_LCIT [JVUV]
33153
33079
-
Phe
GAA
[ENA]
¡û
>W1511469056
JVUV01000055
Bacillota
Leuconostoc citreum 1300_LCIT [JVUV]
58383
58309
-
Phe
GAA
[ENA]
¡û
>W11137097
AEGQ01000002
Bacillota
Leuconostoc lactis KCTC 3773 [AEGQ]
322
248
-
Phe
GAA
[ENA]
¡û
>W11140950
AEMI01000024
Bacillota
Leuconostoc gelidum KCTC 3527 [AEMI]
1017
1091
+
Phe
GAA
[ENA]
¡û
>W11140991
AEMJ01000364
Bacillota
Leuconostoc inhae KCTC 3774 [AEMJ]
332
258
-
Phe
GAA
[ENA]
¡û
>W11142058
AEOR01000924
Bacillota
Leuconostoc lactis KCTC 3528 [AEOR]
187
113
-
Phe
GAA
[ENA]
¡û
>W11184710
BACM01000006
Bacillota
Leuconostoc carnosum KCTC 3525 [BACM]
323
249
-
Phe
GAA
[ENA]
¡û
>C161100081
CP016598
Bacillota
Leuconostoc lactis WiKim40 [CP016598]
844758
844832
+
Phe
GAA
[Ensembl]
¡û
>C161100097
CP016598
Bacillota
Leuconostoc lactis WiKim40 [CP016598]
948830
948904
+
Phe
GAA
[Ensembl]
¡û
>C161107395
LN890331
Bacillota
Leuconostoc gasicomitatum KG16-1 [LN890331]
1939902
1939828
-
Phe
GAA
[Ensembl]
¡û
>C161107411
LN890331
Bacillota
Leuconostoc gasicomitatum KG16-1 [LN890331]
1812710
1812636
-
Phe
GAA
[Ensembl]
¡û
>W121127468
CAGE01000041
Bacillota
Leuconostoc citreum LBAE C10 [CAGE]
1007
1081
+
Phe
GAA
[ENA]
¡û
>W121127515
CAGF01000061
Bacillota
Leuconostoc citreum LBAE C11 [CAGF]
309
235
-
Phe
GAA
[ENA]
¡û
>W121127562
CAGG01000036
Bacillota
Leuconostoc citreum LBAE E16 [CAGG]
1007
1081
+
Phe
GAA
[ENA]
¡û
>W1610187689
FBSX01000027
Bacillota
Leuconostoc inhae subsp. gasicomitatum [FBSX]
1090
1164
+
Phe
GAA
[ENA]
¡û
>W1610187716
FBSY01000012
Bacillota
Leuconostoc gasicomitatum subsp. gasicomitatum [FBSY]
1068
1142
+
Phe
GAA
[ENA]
¡û
>W1610187743
FBTB01000003
Bacillota
Leuconostoc inhae subsp. gasicomitatum [FBTB]
1068
1142
+
Phe
GAA
[ENA]
¡û
>W1610187808
FBTC01000024
Bacillota
Leuconostoc inhae subsp. gasicomitatum [FBTC]
93
167
+
Phe
GAA
[ENA]
¡û
>W1610187846
FBTD01000011
Bacillota
Leuconostoc gasicomitatum subsp. gasicomitatum [FBTD]
56900
56826
-
Phe
GAA
[ENA]
¡û
>W1610187881
FBTU01000019
Bacillota
Leuconostoc inhae subsp. gasicomitatum [FBTU]
1090
1164
+
Phe
GAA
[ENA]
¡û
>C131007817
CP003839
Bacillota
Leuconostoc gelidum JB7 [CP003839]
1867430
1867356
-
Phe
GAA
[Ensembl]
¡û
>C131007833
CP003839
Bacillota
Leuconostoc gelidum JB7 [CP003839]
1736271
1736197
-
Phe
GAA
[Ensembl]
¡û
>C131008282
CP003851
Bacillota
Leuconostoc carnosum JB16 [CP003851]
37234
37308
+
Phe
GAA
[Ensembl]
¡û
>C131008300
CP003851
Bacillota
Leuconostoc carnosum JB16 [CP003851]
166079
166153
+
Phe
GAA
[Ensembl]
¡û
>W1610650156
LJIV01000020
Bacillota
Leuconostoc lactis [LJIV]
306
232
-
Phe
GAA
[ENA]
¡û
>W1710189305
FBSX01000027
Bacillota
Leuconostoc inhae subsp. gasicomitatum [FBSX]
1090
1164
+
Phe
GAA
[ENA]
¡û
>W1710189332
FBSY01000012
Bacillota
Leuconostoc gasicomitatum subsp. gasicomitatum [FBSY]
1068
1142
+
Phe
GAA
[ENA]
¡û
>W1710189359
FBTB01000003
Bacillota
Leuconostoc inhae subsp. gasicomitatum [FBTB]
1068
1142
+
Phe
GAA
[ENA]
¡û
>W1710189424
FBTC01000024
Bacillota
Leuconostoc inhae subsp. gasicomitatum [FBTC]
93
167
+
Phe
GAA
[ENA]
¡û
>W1710189462
FBTD01000011
Bacillota
Leuconostoc gasicomitatum subsp. gasicomitatum [FBTD]
56900
56826
-
Phe
GAA
[ENA]
¡û
>W1710189497
FBTU01000019
Bacillota
Leuconostoc inhae subsp. gasicomitatum [FBTU]
1090
1164
+
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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