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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.285612 (40 seq.)
>W131053723
ANAH01000067
Myxococcota
Cystobacter fuscus DSM 2262 [ANAH]
355
430
+
Trp
CCA
[ENA]
¡û
>W131086635
AOBT01000018
Myxococcota
Myxococcus xanthus DZF1 [AOBT]
201472
201397
-
Trp
CCA
[ENA]
¡û
>W1711625292
MPIN01000016
Myxococcota
Cystobacter ferrugineus [MPIN]
291113
291038
-
Trp
CCA
[ENA]
¡û
>W1711628614
MPOI01000001
Myxococcota
Archangium sp. Cb G35 [MPOI]
968
1043
+
Trp
CCA
[ENA]
¡û
>C014489
CP000113
Myxococcota
Myxococcus xanthus DK 1622 [CP000113]
3594986
3595061
+
Trp
CCA
[Ensembl]
¡û
>w012171
AAMD01000155
Myxococcota
Stigmatella aurantiaca DW4/3-1 [AAMD]
9187
9110
-
Trp
CCA
[ENA]
¡û
>WENV180255307
OBEQ010712882
[OBEQ] groundwater metagenome; groundwater
363
288
-
Trp
CCA
[ENA]
¢þ
>WENV181184970
OEKZ01000423
[OEKZ] metagenome; 1998
794
719
-
Trp
CCA
[ENA]
¢þ
>WENV181192383
OEPS010613704
[OEPS] soil metagenome; soil
201
126
-
Trp
CCA
[ENA]
¢þ
>WENV170556943
CXWL01016603
[CXWL] groundwater metagenome; biofilm material
5258
5183
-
Trp
CCA
[ENA]
¢þ
>C181057878
CP022098
Myxococcota
Cystobacter fuscus DSM 52655 [CP022098]
7904185
7904110
-
Trp
CCA
-
¡û
>C181059862
CP022163
Myxococcota
Melittangium boletus DSM 14713 [CP022163]
113035
112960
-
Trp
CCA
-
¡û
>C181060630
CP022203
Myxococcota
Corallococcus macrosporus DSM 14697 [CP022203]
3607853
3607928
+
Trp
CCA
-
¡û
>C191013125
CP017169
Myxococcota
Myxococcus xanthus GH3.5.6c2 [CP017169]
3642252
3642327
+
Trp
CCA
-
¡û
>C191013190
CP017170
Myxococcota
Myxococcus xanthus GH5.1.9c20 [CP017170]
3529004
3529079
+
Trp
CCA
-
¡û
>C191013256
CP017171
Myxococcota
Myxococcus xanthus KF3.2.8c11 [CP017171]
3386432
3386507
+
Trp
CCA
-
¡û
>C191013321
CP017172
Myxococcota
Myxococcus xanthus KF4.3.9c1 [CP017172]
3584007
3584082
+
Trp
CCA
-
¡û
>C191013386
CP017173
Myxococcota
Myxococcus xanthus MC3.3.5c16 [CP017173]
3570552
3570627
+
Trp
CCA
-
¡û
>C191013451
CP017174
Myxococcota
Myxococcus xanthus MC3.5.9c15 [CP017174]
3570552
3570627
+
Trp
CCA
-
¡û
>C191128678
CP034669
Myxococcota
Corallococcus coralloides B035 [CP034669]
5975070
5974995
-
Trp
CCA
-
¡û
>W141695161
JMCB01000003
Myxococcota
Hyalangium minutum [JMCB]
1228610
1228535
-
Trp
CCA
[ENA]
¡û
>W141695281
JMCC01000113
Myxococcota
Enhygromyxa salina [JMCC]
420
495
+
Trp
CCA
[ENA]
¡û
>W141806630
JPMI01000062
Myxococcota
Archangium violaceum Cb vi76 [JPMI]
306
381
+
Trp
CCA
[ENA]
¡û
>W1911701626
QNUN01000019
Myxococcota
Corallococcus sp. H22C18031201 [QNUN]
195740
195665
-
Trp
CCA
[ENA]
¡û
>W1810452244
PZOX01000029
Myxococcota
Vitiosangium sp. GDMCC 1.1324 [PZOX]
189887
189812
-
Trp
CCA
[ENA]
¡û
>W1810884659
QUMU01000001
Myxococcota
Archangium gephyra DSM 2261 [QUMU]
991
1066
+
Trp
CCA
[ENA]
¡û
>C151008175
CP006003
Myxococcota
Myxococcus fulvus 124B02 [CP006003]
4753100
4753175
+
Trp
CCA
[Ensembl]
¡û
>C151083589
CP011509
Myxococcota
Archangium gephyra DSM 2261 [CP011509]
8244144
8244069
-
Trp
CCA
[Ensembl]
¡û
>C151091044
CP012109
Myxococcota
Myxococcus hansupus mixupus [CP012109]
4940267
4940192
-
Trp
CCA
[Ensembl]
¡û
>C11114318
CP002830
Myxococcota
Corallococcus macrosporus HW-1 [CP002830]
5489897
5489972
+
Trp
CCA
[Ensembl]
¡û
>C11119139
CP002271
Myxococcota
Stigmatella aurantiaca DW4/3-1 [CP002271]
6199839
6199764
-
Trp
CCA
[Ensembl]
¡û
>C121012078
CP003389
Myxococcota
Corallococcus coralloides DSM 2259 [CP003389]
6265339
6265264
-
Trp
CCA
[Ensembl]
¡û
>W121102904
AKXT01000070
Myxococcota
Myxococcus hansupus DSM 436 [AKXT]
16032
15957
-
Trp
CCA
[ENA]
¡û
>W121103120
AKYI01000792
Myxococcota
Myxococcus xanthus DZ2 [AKYI]
5643
5568
-
Trp
CCA
[ENA]
¡û
>C131011663
CP004025
Myxococcota
Myxococcus stipitatus DSM 14675 [CP004025]
4438007
4438082
+
Trp
CCA
[Ensembl]
¡û
>W1710513739
FNAJ01000020
Myxococcota
Myxococcus virescens [FNAJ]
127946
127871
-
Trp
CCA
[ENA]
¡û
>W1710529812
FNOH01000013
Myxococcota
Myxococcus xanthus [FNOH]
492
567
+
Trp
CCA
[ENA]
¡û
>W1710544135
FOAP01000030
Myxococcota
Stigmatella aurantiaca [FOAP]
101449
101374
-
Trp
CCA
[ENA]
¡û
>W1710554017
FOIB01000018
Myxococcota
Myxococcus fulvus [FOIB]
104218
104143
-
Trp
CCA
[ENA]
¡û
>W1710554368
FOIJ01000023
Myxococcota
Stigmatella erecta [FOIJ]
131819
131744
-
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK