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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.285747 (80 seq.)
>W1711724103
MTPX01000003
Actinomycetota
Actinomyces ruminis CtC 72 [MTPX]
115453
115529
+
Lys
CTT
[ENA]
¡û
>W1711774069
MVIV01000007
Actinomycetota
Actinomyces gaoshouyii pika_113 [MVIV]
138973
139049
+
Lys
CTT
[ENA]
¡û
>W1711774070
MVIV01000007
Actinomycetota
Actinomyces gaoshouyii pika_113 [MVIV]
139084
139160
+
Lys
CTT
[ENA]
¡û
>W1711774097
MVIW01000003
Actinomycetota
Actinomyces denticolens [MVIW]
37131
37207
+
Lys
CTT
[ENA]
¡û
>W1711774098
MVIW01000003
Actinomycetota
Actinomyces denticolens [MVIW]
37242
37318
+
Lys
CTT
[ENA]
¡û
>C171108548
CP020468
Actinomycetota
Actinomyces gaoshouyii pika_114 [CP020468]
721570
721494
-
Lys
CTT
-
¡û
>C171108549
CP020468
Actinomycetota
Actinomyces gaoshouyii pika_114 [CP020468]
721459
721383
-
Lys
CTT
-
¡û
>W131222751
AUBN01000009
Actinomycetota
Actinomyces gerencseriae DSM 6844 [AUBN]
59553
59477
-
Lys
CTT
[ENA]
¡û
>WENV180137421
OATO01020597
[OATO] human gut metagenome; faeces
276
352
+
Lys
CTT
[ENA]
¢þ
>WENV180142208
OATV01007018
[OATV] human gut metagenome; faeces
539
463
-
Lys
CTT
[ENA]
¢þ
>WENV180190730
OAXA01000661
[OAXA] human gut metagenome; faeces
1056
980
-
Lys
CTT
[ENA]
¢þ
>WENV180190731
OAXA01000661
[OAXA] human gut metagenome; faeces
943
867
-
Lys
CTT
[ENA]
¢þ
>W141024104
AKGF01000023
Actinomycetota
Actinomyces timonensis DSM 23838 [AKGF]
173938
173862
-
Lys
CTT
[ENA]
¡û
>W141024105
AKGF01000023
Actinomycetota
Actinomyces timonensis DSM 23838 [AKGF]
173826
173750
-
Lys
CTT
[ENA]
¡û
>WENV180419447
OBVM01011075
[OBVM] human gut metagenome; faeces
56
132
+
Lys
CTT
[ENA]
¢þ
>WENV180420973
OBVP01000910
[OBVP] human gut metagenome; faeces
3282
3358
+
Lys
CTT
[ENA]
¢þ
>WENV180428067
OBWB01004588
[OBWB] human gut metagenome; faeces
679
603
-
Lys
CTT
[ENA]
¢þ
>WENV180432722
OBWI01058065
[OBWI] human gut metagenome; faeces
79
3
-
Lys
CTT
[ENA]
¢þ
>WENV180484179
OBZH01039950
[OBZH] human gut metagenome; faeces
168
92
-
Lys
CTT
[ENA]
¢þ
>WENV180492513
OBZW01025671
[OBZW] human gut metagenome; faeces
61
137
+
Lys
CTT
[ENA]
¢þ
>WENV180505134
OCAO01015119
[OCAO] human gut metagenome; faeces
193
117
-
Lys
CTT
[ENA]
¢þ
>WENV180728829
ODGU01103158
[ODGU] human metagenome; G_DNA_Supragingival plaque
434
509
+
Lys
CTT
[ENA]
¢þ
>WENV180732983
ODGY01012384
[ODGY] human metagenome; G_DNA_Supragingival plaque
1102
1026
-
Lys
CTT
[ENA]
¢þ
>WENV180764470
ODIB01000004
[ODIB] human metagenome; G_DNA_Supragingival plaque
87677
87601
-
Lys
CTT
[ENA]
¢þ
>WENV180778090
ODIM01000587
[ODIM] human metagenome; G_DNA_Supragingival plaque
176
100
-
Lys
CTT
[ENA]
¢þ
>WENV180788918
ODIS01154889
[ODIS] human metagenome; G_DNA_Supragingival plaque
274
349
+
Lys
CTT
[ENA]
¢þ
>WENV180796217
ODJB01002062
[ODJB] human metagenome; G_DNA_Supragingival plaque
6357
6281
-
Lys
CTT
[ENA]
¢þ
>WENV180800915
ODJD01002870
[ODJD] human metagenome; G_DNA_Supragingival plaque
1109
1033
-
Lys
CTT
[ENA]
¢þ
>WENV180822189
ODJT01000059
[ODJT] human metagenome; G_DNA_Supragingival plaque
26614
26538
-
Lys
CTT
[ENA]
¢þ
>WENV180836160
ODKE01052782
[ODKE] human metagenome; G_DNA_Supragingival plaque
78
3
-
Lys
CTT
[ENA]
¢þ
>WENV180881479
ODMA01000905
[ODMA] human metagenome; G_DNA_Supragingival plaque
4524
4600
+
Lys
CTT
[ENA]
¢þ
>WENV180935079
ODTS01043173
[ODTS] human metagenome; G_DNA_Subgingival plaque
176
100
-
Lys
CTT
[ENA]
¢þ
>WENV180944322
ODUC01013706
[ODUC] human metagenome; G_DNA_Supragingival plaque
2153
2228
+
Lys
CTT
[ENA]
¢þ
>WENV180952329
ODUH01246816
[ODUH] human metagenome; G_DNA_Subgingival plaque
176
100
-
Lys
CTT
[ENA]
¢þ
>WENV180980635
ODVE01000867
[ODVE] human metagenome; G_DNA_Supragingival plaque
3404
3480
+
Lys
CTT
[ENA]
¢þ
>WENV181030091
ODXF01029973
[ODXF] human metagenome; G_DNA_Supragingival plaque
588
663
+
Lys
CTT
[ENA]
¢þ
>WENV181050104
ODYD01006360
[ODYD] human metagenome; G_DNA_Supragingival plaque
3879
3955
+
Lys
CTT
[ENA]
¢þ
>WENV181081308
OEAS01174922
[OEAS] human metagenome; G_DNA_Supragingival plaque
180
105
-
Lys
CTT
[ENA]
¢þ
>WENV181091662
OEBC01067245
[OEBC] human metagenome; G_DNA_Supragingival plaque
327
402
+
Lys
CTT
[ENA]
¢þ
>WENV181143565
OEHM01002126
[OEHM] human metagenome; G_DNA_Supragingival plaque
1227
1151
-
Lys
CTT
[ENA]
¢þ
>WENV181177872
OEJS01024891
[OEJS] human metagenome; G_DNA_Supragingival plaque
788
713
-
Lys
CTT
[ENA]
¢þ
>WENV181187197
OENY01000245
[OENY] human gut metagenome; human gut
4109
4185
+
Lys
CTT
[ENA]
¢þ
>W141206212
AZLV01001129
Actinomycetota
Actinomyces urogenitalis DORA_12 [AZLV]
646
570
-
Lys
CTT
[ENA]
¡û
>W141206213
AZLV01001129
Actinomycetota
Actinomyces urogenitalis DORA_12 [AZLV]
533
457
-
Lys
CTT
[ENA]
¡û
>WENV182814952
OJYO01000080
[OJYO] human gut metagenome; human gut
19507
19583
+
Lys
CTT
[ENA]
¢þ
>WENV182815323
OJYQ01001251
[OJYQ] human gut metagenome; human gut
1193
1117
-
Lys
CTT
[ENA]
¢þ
>WENV182822902
OKBP01000066
[OKBP] human gut metagenome; human gut
11749
11673
-
Lys
CTT
[ENA]
¢þ
>WENV182822903
OKBP01000066
[OKBP] human gut metagenome; human gut
11636
11560
-
Lys
CTT
[ENA]
¢þ
>WENV182823013
OKBQ01001025
[OKBQ] human gut metagenome; human gut
159
235
+
Lys
CTT
[ENA]
¢þ
>WENV182845967
OKJI01000052
[OKJI] human gut metagenome; human gut
11824
11748
-
Lys
CTT
[ENA]
¢þ
>WENV182845968
OKJI01000052
[OKJI] human gut metagenome; human gut
11711
11635
-
Lys
CTT
[ENA]
¢þ
>WENV182846406
OKJM01000137
[OKJM] human gut metagenome; human gut
1285
1209
-
Lys
CTT
[ENA]
¢þ
>WENV182846407
OKJM01000137
[OKJM] human gut metagenome; human gut
1172
1096
-
Lys
CTT
[ENA]
¢þ
>WENV182854980
OKMX01000512
[OKMX] human gut metagenome; human gut
5450
5526
+
Lys
CTT
[ENA]
¢þ
>WENV182854981
OKMX01000512
[OKMX] human gut metagenome; human gut
5563
5639
+
Lys
CTT
[ENA]
¢þ
>WENV182960957
OKWK01000064
[OKWK] human gut metagenome; stool
33827
33751
-
Lys
CTT
[ENA]
¢þ
>C181003382
AP017896
Actinomycetota
Actinomyces sp. Chiba101 [AP017896]
1939561
1939635
+
Lys
CTT
-
¡û
>C181003383
AP017896
Actinomycetota
Actinomyces sp. Chiba101 [AP017896]
1939672
1939746
+
Lys
CTT
-
¡û
>C181160795
CP027862
Actinomycetota
Actinomyces sp. Z16 [CP027862]
2526619
2526695
+
Lys
CTT
-
¡û
>C191164727
CP039292
Actinomycetota
Actinomyces procaprae dk561 [CP039292]
2297371
2297447
+
Lys
CTT
-
¡û
>C191208288
LR134350
Actinomycetota
Actinomyces howellii NCTC11636 [LR134350]
21326
21251
-
Lys
CTT
-
¡û
>C191208651
LR134357
Actinomycetota
Actinomyces israelii NCTC12972 [LR134357]
605831
605755
-
Lys
CTT
-
¡û
>C191208652
LR134357
Actinomycetota
Actinomyces israelii NCTC12972 [LR134357]
605715
605639
-
Lys
CTT
-
¡û
>W09121405
ACFH01000004
Actinomycetota
Actinomyces urogenitalis DSM 15434 [ACFH]
38165
38089
-
Lys
CTT
[ENA]
¡û
>W09121406
ACFH01000004
Actinomycetota
Actinomyces urogenitalis DSM 15434 [ACFH]
38052
37976
-
Lys
CTT
[ENA]
¡û
>W1910281445
FQTT01000011
Actinomycetota
Actinomyces glycerinitolerans [FQTT]
57186
57262
+
Lys
CTT
[ENA]
¡û
>W1810186595
PKHA01000001
Actinomycetota
Actinomyces urogenitalis UMB0319 [PKHA]
603269
603345
+
Lys
CTT
[ENA]
¡û
>W1810186596
PKHA01000001
Actinomycetota
Actinomyces urogenitalis UMB0319 [PKHA]
603382
603458
+
Lys
CTT
[ENA]
¡û
>W1810705123
QMIN01000002
Actinomycetota
Actinomyces sp. Z5 [QMIN]
20723
20799
+
Lys
CTT
[ENA]
¡û
>W1810705180
QMIO01000007
Actinomycetota
Actinomyces sp. Z3 [QMIO]
96356
96432
+
Lys
CTT
[ENA]
¡û
>W1511350915
JRMT01000059
Actinomycetota
Actinomyces urogenitalis S6-C4 [JRMT]
33868
33792
-
Lys
CTT
[ENA]
¡û
>W11171080
AFQC01000051
Actinomycetota
Actinomyces sp. oral taxon 448 oral taxon 448 str. F0400 [AFQC]
291750
291826
+
Lys
CTT
[ENA]
¡û
>C161068930
CP014228
Actinomycetota
Actinomyces radicidentis CCUG 36733 [CP014228]
3046932
3047008
+
Lys
CTT
[Ensembl]
¡û
>C161068931
CP014228
Actinomycetota
Actinomyces radicidentis CCUG 36733 [CP014228]
3047044
3047120
+
Lys
CTT
[Ensembl]
¡û
>W1710082804
BDIO01000003
Actinomycetota
Actinomyces denticolens [BDIO]
332644
332568
-
Lys
CTT
[ENA]
¡û
>W1710082805
BDIO01000003
Actinomycetota
Actinomyces denticolens [BDIO]
332533
332457
-
Lys
CTT
[ENA]
¡û
>W1710523214
FNHU01000003
Actinomycetota
Actinomyces ruminicola [FNHU]
267413
267489
+
Lys
CTT
[ENA]
¡û
>W1710524115
FNIM01000001
Actinomycetota
Actinomyces ruminicola [FNIM]
266815
266891
+
Lys
CTT
[ENA]
¡û
>W1710587371
FQYL01000004
Actinomycetota
Actinomyces denticolens [FQYL]
181773
181849
+
Lys
CTT
[ENA]
¡û
>W1710587372
FQYL01000004
Actinomycetota
Actinomyces denticolens [FQYL]
181884
181960
+
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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