This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.285809 (38 seq.)
>W1711309671
MAQZ01000081
Actinomycetota
Frankia sp. CgIM4 [MAQZ]
5139
5066
-
Arg
ACG
[ENA]
¡û
>W1711328834
MBLM01000108
Actinomycetota
Parafrankia colletiae Cc1.17 [MBLM]
81707
81634
-
Arg
ACG
[ENA]
¡û
>W1711328862
MBLN01000002
Actinomycetota
Pseudofrankia sp. EUN1h EUN1h [MBLN]
1412
1485
+
Arg
ACG
[ENA]
¡û
>W1711328980
MBLO01000269
Actinomycetota
Pseudofrankia sp. BMG5.36 BMG5.36 [MBLO]
89777
89852
+
Arg
ACG
[ENA]
¡û
>W1711334205
MBQD01000021
Actinomycetota
Tessaracoccus lapidicaptus [MBQD]
252935
252862
-
Arg
ACG
[ENA]
¡û
>W1711603526
MOMC01000057
Actinomycetota
Pseudofrankia asymbiotica NRRL B-16386 [MOMC]
81938
82013
+
Arg
ACG
[ENA]
¡û
>C171091507
CP019229
Actinomycetota
Tessaracoccus sp. T2.5-30 [CP019229]
1338205
1338132
-
Arg
ACG
-
¡û
>W131170112
ARFH01000017
Actinomycetota
Parafrankia elaeagni BMG5.12 [ARFH]
1591
1518
-
Arg
ACG
[ENA]
¡û
>W131230323
AUHN01000004
Actinomycetota
Jonesia quinghaiensis DSM 15701 [AUHN]
43602
43529
-
Arg
ACG
[ENA]
¡û
>W131230324
AUHN01000004
Actinomycetota
Jonesia quinghaiensis DSM 15701 [AUHN]
39211
39136
-
Arg
ACG
[ENA]
¡û
>WENV180114504
OAPS01013178
[OAPS] marine metagenome; sea water
565
492
-
Arg
ACG
[ENA]
¢þ
>WENV180592172
OCOV01210775
[OCOV] marine metagenome; ENVO:01000301
261
188
-
Arg
ACG
[ENA]
¢þ
>WENV180650280
OCSY01002979
[OCSY] marine metagenome; 30 L Plastic container
482
555
+
Arg
ACG
[ENA]
¢þ
>W141241407
CAHH01000011
Actinomycetota
Timonella senegalensis JC301 [CAHH]
35482
35409
-
Arg
ACG
[ENA]
¡û
>W141241408
CAHH01000011
Actinomycetota
Timonella senegalensis JC301 [CAHH]
32350
32277
-
Arg
ACG
[ENA]
¡û
>WENV183093272
OLLX01000068
[OLLX] soil metagenome; soil
79771
79846
+
Arg
ACG
[ENA]
¢þ
>WENV183624577
OOGD01048510
[OOGD] marine metagenome; sea ice
266
339
+
Arg
ACG
[ENA]
¢þ
>WENV170011430
APMI01065222
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
925
850
-
Arg
ACG
[ENA]
¢þ
>WENV170552014
CXWJ01034335
[CXWJ] wastewater metagenome; activated sludge
2263
2338
+
Arg
ACG
[ENA]
¢þ
>WENV170623385
FUWD013149117
[FUWD] metagenome; unknown
553
626
+
Arg
ACG
[ENA]
¢þ
>WENV170631656
FUWD013360246
[FUWD] metagenome; unknown
553
626
+
Arg
ACG
[ENA]
¢þ
>C181055918
CP022038
Actinomycetota
Jonesia denitrificans FDAARGOS_301 [CP022038]
775914
775839
-
Arg
ACG
-
¡û
>C181055919
CP022038
Actinomycetota
Jonesia denitrificans FDAARGOS_301 [CP022038]
772552
772477
-
Arg
ACG
-
¡û
>C181212439
LS483423
Actinomycetota
Jonesia denitrificans NCTC10816 [LS483423]
312794
312869
+
Arg
ACG
-
¡û
>C181212440
LS483423
Actinomycetota
Jonesia denitrificans NCTC10816 [LS483423]
316156
316231
+
Arg
ACG
-
¡û
>W09109188
ABUA01000023
Actinomycetota
Jonesia denitrificans DSM 20603 [ABUA]
3402
3327
-
Arg
ACG
[ENA]
¡û
>W141803568
JPGU01000002
Actinomycetota
Frankia sp. CeD [JPGU]
5131
5058
-
Arg
ACG
[ENA]
¡û
>C151048679
CP009312
Actinomycetota
Lawsonella clevelandensis X1036 [CP009312]
780924
780851
-
Arg
ACG
-
¡û
>W10111553
ADDL01000057
Actinomycetota
Pseudofrankia inefficax EuI1c [ADDL]
49909
49984
+
Arg
ACG
[ENA]
¡û
>C10107896
CP001706
Actinomycetota
Jonesia denitrificans DSM 20603 [CP001706]
312952
313027
+
Arg
ACG
[Ensembl]
¡û
>C10107897
CP001706
Actinomycetota
Jonesia denitrificans DSM 20603 [CP001706]
316314
316389
+
Arg
ACG
[Ensembl]
¡û
>C10114237
CP001821
Actinomycetota
Xylanimonas cellulosilytica DSM 15894 [CP001821]
3582996
3582921
-
Arg
ACG
[Ensembl]
¡û
>C11109210
CP002299
Actinomycetota
Pseudofrankia inefficax EuI1c [CP002299]
7909469
7909544
+
Arg
ACG
[Ensembl]
¡û
>W11114480
ADDL01000057
Actinomycetota
Pseudofrankia inefficax EuI1c [ADDL]
49909
49984
+
Arg
ACG
[ENA]
¡û
>W1511573829
LANG01000009
Actinomycetota
Pseudofrankia sp. DC12 DC12 [LANG]
160663
160588
-
Arg
ACG
[ENA]
¡û
>W121010753
AGJN01000005
Actinomycetota
Pseudofrankia saprophytica CN3 [AGJN]
185865
185938
+
Arg
ACG
[ENA]
¡û
>W1611066172
MBQD01000021
Actinomycetota
Tessaracoccus lapidicaptus [MBQD]
252935
252862
-
Arg
ACG
[ENA]
¡û
>W1710588338
FQZG01000049
Actinomycetota
Tessaracoccus bendigoensis DSM 12906 [FQZG]
16726
16801
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK