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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.285823 (42 seq.)
>W131240102
BAOB01000203
Gammaproteobacteria
Vibrio azureus NBRC 104587 [BAOB]
77
2
-
His
GTG
[ENA]
¡û
>W131240126
BAOB01000568
Gammaproteobacteria
Vibrio azureus NBRC 104587 [BAOB]
3
78
+
His
GTG
[ENA]
¡û
>W131240128
BAOB01000569
Gammaproteobacteria
Vibrio azureus NBRC 104587 [BAOB]
120
195
+
His
GTG
[ENA]
¡û
>W131240129
BAOB01000570
Gammaproteobacteria
Vibrio azureus NBRC 104587 [BAOB]
3
78
+
His
GTG
[ENA]
¡û
>W131240677
BAOJ01000072
Gammaproteobacteria
Vibrio sagamiensis NBRC 104589 [BAOJ]
209
134
-
His
GTG
[ENA]
¡û
>W131251433
CAVM010000068
Gammaproteobacteria
Xenorhabdus nematophila F1 [CAVM]
35143
35068
-
His
GTG
[ENA]
¡û
>W1711738740
MUBJ01000002
Gammaproteobacteria
Xenorhabdus vietnamensis [MUBJ]
67188
67263
+
His
GTG
[ENA]
¡û
>W1711738831
MUBK01000005
Gammaproteobacteria
Xenorhabdus beddingii [MUBK]
15896
15821
-
His
GTG
[ENA]
¡û
>W141230920
BATL01000064
Gammaproteobacteria
Vibrio azureus NBRC 104587 [BATL]
11029
11104
+
His
GTG
[ENA]
¡û
>W141230921
BATL01000065
Gammaproteobacteria
Vibrio azureus NBRC 104587 [BATL]
40
115
+
His
GTG
[ENA]
¡û
>W141258434
CBXE010000478
Gammaproteobacteria
Xenorhabdus cabanillasii JM26 [CBXE]
138
63
-
His
GTG
[ENA]
¡û
>W141258488
CBXF010000154
Gammaproteobacteria
Xenorhabdus szentirmaii DSM 16338 [CBXF]
42914
42989
+
His
GTG
[ENA]
¡û
>WENV170012500
ASRK01009374
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
87
12
-
His
GTG
[ENA]
¢þ
>WENV170704230
LLEJ01000289
[LLEJ] bioreactor metagenome; day101 10degC chemostat 2011 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
6145
6220
+
His
GTG
[ENA]
¢þ
>C181062901
CP022355
Gammaproteobacteria
Paraphotobacterium marinum NSCS20N07D [CP022355, CP022356]
547145
547070
-
His
GTG
-
¡û
>C181062903
CP022355
Gammaproteobacteria
Paraphotobacterium marinum NSCS20N07D [CP022355, CP022356]
546969
546894
-
His
GTG
-
¡û
>W141520156
JGVK01000009
Gammaproteobacteria
Candidatus Photodesmus blepharus [JGVK]
57760
57685
-
His
GTG
[ENA]
¡û
>C191087981
CP032329
Gammaproteobacteria
Xenorhabdus nematophila YL001 [CP032329]
3103494
3103419
-
His
GTG
-
¡û
>W1910339725
FTLG01000030
Gammaproteobacteria
Xenorhabdus innexi [FTLG]
30572
30647
+
His
GTG
[ENA]
¡û
>W1910918745
NIBS01000001
Gammaproteobacteria
Xenorhabdus budapestensis DSM 16342 [NIBS]
69378
69453
+
His
GTG
[ENA]
¡û
>W1910918935
NIBU01000015
Gammaproteobacteria
Xenorhabdus innexi DSM 16336 [NIBU]
47136
47061
-
His
GTG
[ENA]
¡û
>W1910918999
NIBV01000001
Gammaproteobacteria
Xenorhabdus szentirmaii DSM 16338 [NIBV]
643525
643450
-
His
GTG
[ENA]
¡û
>W1910932657
NITY01000005
Gammaproteobacteria
Xenorhabdus mauleonii DSM 17908 [NITY]
87370
87295
-
His
GTG
[ENA]
¡û
>W1910932707
NITZ01000001
Gammaproteobacteria
Xenorhabdus miraniensis DSM 17902 [NITZ]
374626
374551
-
His
GTG
[ENA]
¡û
>W1910932839
NIUA01000001
Gammaproteobacteria
Xenorhabdus szentirmaii US123 [NIUA]
3000572
3000497
-
His
GTG
[ENA]
¡û
>W1910939744
NJAH01000001
Gammaproteobacteria
Xenorhabdus sp. KK7.4 [NJAH]
155665
155740
+
His
GTG
[ENA]
¡û
>W1910939908
NJAJ01000006
Gammaproteobacteria
Xenorhabdus stockiae DSM 17904 [NJAJ]
37062
37137
+
His
GTG
[ENA]
¡û
>W1910941315
NJCW01000008
Gammaproteobacteria
Xenorhabdus sp. KJ12.1 [NJCW]
37334
37409
+
His
GTG
[ENA]
¡û
>W1910942236
NJGH01000028
Gammaproteobacteria
Xenorhabdus cabanillasii JM26 [NJGH]
21780
21705
-
His
GTG
[ENA]
¡û
>W1810861692
QTUB01000001
Gammaproteobacteria
Xenorhabdus cabanillasii DSM 17905 [QTUB]
274823
274898
+
His
GTG
[ENA]
¡û
>C151098286
FO704551
Gammaproteobacteria
Xenorhabdus poinarii G6 [FO704551]
3425571
3425496
-
His
GTG
[Ensembl]
¡û
>C151103901
LN681227
Gammaproteobacteria
Xenorhabdus nematophila AN6/1 [LN681227]
333719
333794
+
His
GTG
[Ensembl]
¡û
>W1510059471
CCWM01000024
Gammaproteobacteria
Xenorhabdus nematophila str. Anatoliense [CCWM]
38315
38390
+
His
GTG
[ENA]
¡û
>W1510059541
CCWM01000449
Gammaproteobacteria
Xenorhabdus nematophila str. Anatoliense [CCWM]
38315
38390
+
His
GTG
[ENA]
¡û
>W1510060134
CCWW01000318
Gammaproteobacteria
Xenorhabdus nematophila str. Websteri [CCWW]
126007
125932
-
His
GTG
[ENA]
¡û
>C10114268
FN667742
Gammaproteobacteria
Xenorhabdus nematophila ATCC 19061 [FN667742]
333747
333822
+
His
GTG
[Ensembl]
¡û
>W1511347665
JRJV01000001
Gammaproteobacteria
Xenorhabdus nematophila C2-3 [JRJV]
38826
38901
+
His
GTG
[ENA]
¡û
>W1511401226
JTHK01000027
Gammaproteobacteria
Xenorhabdus sp. NBAII XenSa04 [JTHK]
39125
39200
+
His
GTG
[ENA]
¡û
>W1511678256
LFCV01000044
Gammaproteobacteria
Xenorhabdus khoisanae MCB [LFCV]
37864
37939
+
His
GTG
[ENA]
¡û
>W1710565491
FORG01000003
Gammaproteobacteria
Xenorhabdus mauleonii [FORG]
362078
362003
-
His
GTG
[ENA]
¡û
>W1710570979
FOVO01000001
Gammaproteobacteria
Xenorhabdus japonica [FOVO]
38020
38095
+
His
GTG
[ENA]
¡û
>W1710578168
FPBJ01000009
Gammaproteobacteria
Xenorhabdus koppenhoeferi [FPBJ]
36629
36704
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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