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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.285847 (65 seq.)
>W1711018414
LQWY01000001
Bacillota
Domibacillus aminovorans [LQWY]
105817
105742
-
His
GTG
[ENA]
¡û
>W1711018487
LQWZ01000004
Bacillota
Domibacillus aminovorans [LQWZ]
837
762
-
His
GTG
[ENA]
¡û
>W131166490
ARCN01000002
Bacillota
Bacillus sp. 37MA [ARCN]
27
102
+
His
GTG
[ENA]
¡û
>W131166497
ARCN01000002
Bacillota
Bacillus sp. 37MA [ARCN]
871416
871491
+
His
GTG
[ENA]
¡û
>W131166569
ARCN01000026
Bacillota
Bacillus sp. 37MA [ARCN]
44753
44678
-
His
GTG
[ENA]
¡û
>W1711164219
LVTO01000012
Bacillota
Bacillus badius [LVTO]
1251
1326
+
His
GTG
[ENA]
¡û
>W1711164240
LVTO01000026
Bacillota
Bacillus badius [LVTO]
3478
3403
-
His
GTG
[ENA]
¡û
>W1711173761
LWDO01000006
Bacillota
Bacillus badius encimensis [LWDO]
102837
102762
-
His
GTG
[ENA]
¡û
>W1711173780
LWDO01000020
Bacillota
Bacillus badius encimensis [LWDO]
6443
6368
-
His
GTG
[ENA]
¡û
>W1711301767
MAIG01000006
Bacillota
Bacillus badius encimensis [MAIG]
102837
102762
-
His
GTG
[ENA]
¡û
>W1711301786
MAIG01000020
Bacillota
Bacillus badius encimensis [MAIG]
6443
6368
-
His
GTG
[ENA]
¡û
>W131234913
AULE01000005
Bacillota
Paenibacillus taiwanensis DSM 18679 [AULE]
60764
60839
+
His
GTG
[ENA]
¡û
>W1711794437
MWMM01000010
Bacillota
Bacillus badius encimensis [MWMM]
102889
102814
-
His
GTG
[ENA]
¡û
>W1711794458
MWMM01000030
Bacillota
Bacillus badius encimensis [MWMM]
6536
6461
-
His
GTG
[ENA]
¡û
>W1711979221
NDGK01000010
Bacillota
Paenibacillus thiaminolyticus [NDGK]
207515
207440
-
His
GTG
[ENA]
¡û
>C171098060
CP019687
Bacillota
Paenibacillus larvae subsp. larvae ATCC 9545 [CP019687]
329226
329301
+
His
GTG
-
¡û
>C171098099
CP019687
Bacillota
Paenibacillus larvae subsp. larvae ATCC 9545 [CP019687]
3052088
3052013
-
His
GTG
-
¡û
>C171099993
CP019794
Bacillota
Paenibacillus larvae subsp. pulvifaciens ATCC 13537 [CP019794]
2201088
2201013
-
His
GTG
-
¡û
>C171100026
CP019794
Bacillota
Paenibacillus larvae subsp. pulvifaciens ATCC 13537 [CP019794]
1568232
1568157
-
His
GTG
-
¡û
>W141000945
ADFW01000001
Bacillota
Paenibacillus larvae subsp. larvae DSM 25719 [ADFW]
2646810
2646885
+
His
GTG
[ENA]
¡û
>W141001007
ADFW01000002
Bacillota
Paenibacillus larvae subsp. larvae DSM 25719 [ADFW]
598168
598243
+
His
GTG
[ENA]
¡û
>W141080224
ATMS01000031
Bacillota
Paenibacillus alvei A6-6i-x [ATMS]
70269
70194
-
His
GTG
[ENA]
¡û
>W141080234
ATMS01000041
Bacillota
Paenibacillus alvei A6-6i-x [ATMS]
63112
63187
+
His
GTG
[ENA]
¡û
>WENV181801259
OGSB01000024
[OGSB] human gut metagenome; fecal sample 5 from infant 3
512
587
+
His
GTG
[ENA]
¢þ
>WENV181810418
OGSV01000040
[OGSV] human gut metagenome; fecal sample 4 from infant 3
747
822
+
His
GTG
[ENA]
¢þ
>WENV181822755
OGUH01000026
[OGUH] human gut metagenome; fecal sample 3 from infant 3
333
408
+
His
GTG
[ENA]
¢þ
>C181038442
CP019651
Bacillota
Paenibacillus larvae subsp. larvae ERIC_I [CP019651]
173042
173117
+
His
GTG
-
¡û
>C181038504
CP019651
Bacillota
Paenibacillus larvae subsp. larvae ERIC_I [CP019651]
2896319
2896244
-
His
GTG
-
¡û
>C181038622
CP019655
Bacillota
Paenibacillus larvae subsp. larvae Eric_III [CP019655]
4292808
4292733
-
His
GTG
-
¡û
>C181038655
CP019655
Bacillota
Paenibacillus larvae subsp. larvae Eric_III [CP019655]
3671614
3671539
-
His
GTG
-
¡û
>C181038699
CP019659
Bacillota
Paenibacillus larvae subsp. larvae Eric_IV [CP019659]
4072282
4072207
-
His
GTG
-
¡û
>C181038732
CP019659
Bacillota
Paenibacillus larvae subsp. larvae Eric_IV [CP019659]
3451090
3451015
-
His
GTG
-
¡û
>C191098765
CP033044
Bacillota
Mesobacillus foraminis Bac44 [CP033044]
3437400
3437475
+
His
GTG
-
¡û
>C191098841
CP033044
Bacillota
Mesobacillus foraminis Bac44 [CP033044]
840200
840125
-
His
GTG
-
¡û
>W141819580
JQMI01000018
Bacillota
Bacillus sp. 72 [JQMI]
923783
923858
+
His
GTG
[ENA]
¡û
>W141819599
JQMI01000025
Bacillota
Bacillus sp. 72 [JQMI]
36499
36574
+
His
GTG
[ENA]
¡û
>W1910155184
BIMI01000183
Bacillota
Paenibacillus thiaminolyticus NBRC 15656 [BIMI]
80
5
-
His
GTG
[ENA]
¡û
>W1910827445
MWSK01000008
Bacillota
Domibacillus enclensis DSM 25145 [MWSK]
147726
147651
-
His
GTG
[ENA]
¡û
>W1910940998
NJAY01000003
Bacillota
Bacillus xiapuensis FJAT-46582 [NJAY]
280900
280975
+
His
GTG
[ENA]
¡û
>W1910941042
NJAY01000005
Bacillota
Bacillus xiapuensis FJAT-46582 [NJAY]
542780
542705
-
His
GTG
[ENA]
¡û
>W1911192367
NQYC01000001
Bacillota
Bacillus sp. PK3_68 [NQYC]
3494459
3494534
+
His
GTG
[ENA]
¡û
>W1911809801
QYZD01000032
Bacillota
Paenibacillus thiaminolyticus BO5 [QYZD]
1007
1082
+
His
GTG
[ENA]
¡û
>W1810683202
QKVW01000009
Bacillota
Paenibacillus dendritiformis PV3-16 [QKVW]
979
1054
+
His
GTG
[ENA]
¡û
>C151075965
CP011058
Bacillota
Paenibacillus beijingensis DSM 24997 [CP011058]
699627
699552
-
His
GTG
[Ensembl]
¡û
>W11130175
ADZY01000009
Bacillota
Paenibacillus larvae subsp. larvae B-3650 [ADZY]
78
3
-
His
GTG
[ENA]
¡û
>W1511505583
JXLO01000004
Bacillota
Bacillus badius DSM 30822 [JXLO]
1230
1305
+
His
GTG
[ENA]
¡û
>W1511505598
JXLO01000005
Bacillota
Bacillus badius DSM 30822 [JXLO]
1087
1162
+
His
GTG
[ENA]
¡û
>W1511505646
JXLP01000006
Bacillota
Bacillus badius MTCC 1458 [JXLP]
3525
3450
-
His
GTG
[ENA]
¡û
>W1511505700
JXLP01000013
Bacillota
Bacillus badius MTCC 1458 [JXLP]
1087
1162
+
His
GTG
[ENA]
¡û
>W1511566468
LAHK01000040
Bacillota
Domibacillus enclensis NIO-1016 [LAHK]
953
1028
+
His
GTG
[ENA]
¡û
>W1511693293
LFZU01000001
Bacillota
Bacillus sp. FJAT-27231 [LFZU]
687138
687213
+
His
GTG
[ENA]
¡û
>W1511693314
LFZU01000001
Bacillota
Bacillus sp. FJAT-27231 [LFZU]
1475352
1475427
+
His
GTG
[ENA]
¡û
>W1610543240
JTHN01000241
Bacillota
Paenibacillus sp. A3 [JTHN]
1006
1081
+
His
GTG
[ENA]
¡û
>W1610866890
LQWY01000001
Bacillota
Domibacillus aminovorans [LQWY]
105817
105742
-
His
GTG
[ENA]
¡û
>W1610866963
LQWZ01000004
Bacillota
Domibacillus aminovorans [LQWZ]
837
762
-
His
GTG
[ENA]
¡û
>W1610974759
LVTO01000012
Bacillota
Bacillus badius [LVTO]
1251
1326
+
His
GTG
[ENA]
¡û
>W1610974780
LVTO01000026
Bacillota
Bacillus badius [LVTO]
3478
3403
-
His
GTG
[ENA]
¡û
>W1610982366
LWDO01000006
Bacillota
Bacillus badius encimensis [LWDO]
102837
102762
-
His
GTG
[ENA]
¡û
>W1610982385
LWDO01000020
Bacillota
Bacillus badius encimensis [LWDO]
6443
6368
-
His
GTG
[ENA]
¡û
>W1611052648
MAIG01000006
Bacillota
Bacillus badius encimensis [MAIG]
102837
102762
-
His
GTG
[ENA]
¡û
>W1611052667
MAIG01000020
Bacillota
Bacillus badius encimensis [MAIG]
6443
6368
-
His
GTG
[ENA]
¡û
>W1710514519
FNAZ01000007
Bacillota
Paenibacillus sp. cl6col [FNAZ]
371940
372015
+
His
GTG
[ENA]
¡û
>W1710514528
FNAZ01000008
Bacillota
Paenibacillus sp. cl6col [FNAZ]
305090
305015
-
His
GTG
[ENA]
¡û
>W1710595367
FTLX01000008
Bacillota
Domibacillus enclensis [FTLX]
147726
147651
-
His
GTG
[ENA]
¡û
>W1710646371
JTHN01000241
Bacillota
Paenibacillus sp. A3 [JTHN]
1006
1081
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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