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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.285850 (51 seq.)
>W1710821370
LKSU01000004
Actinomycetota
Bifidobacterium longum subsp. longum [LKSU]
133184
133108
-
Pro
TGG
[ENA]
¡û
>W1710821449
LKSV01000029
Actinomycetota
Bifidobacterium longum subsp. longum [LKSV]
477
553
+
Pro
TGG
[ENA]
¡û
>W1711937834
NAQG01000012
Actinomycetota
Bifidobacterium breve [NAQG]
150626
150702
+
Pro
TGG
[ENA]
¡û
>C171025567
CP013673
Actinomycetota
Bifidobacterium longum 35624 [CP013673]
1440129
1440205
+
Pro
TGG
-
¡û
>C171096073
CP019596
Actinomycetota
Bifidobacterium breve LMC520 [CP019596]
948153
948077
-
Pro
TGG
-
¡û
>WENV180121194
OASQ01003936
[OASQ] human gut metagenome; faeces
273
197
-
Pro
TGG
[ENA]
¢þ
>WENV180148889
OAUK01005079
[OAUK] human gut metagenome; faeces
1616
1540
-
Pro
TGG
[ENA]
¢þ
>WENV180160695
OAVC01020539
[OAVC] human gut metagenome; faeces
175
99
-
Pro
TGG
[ENA]
¢þ
>WENV180169102
OAVS01000834
[OAVS] human gut metagenome; faeces
3325
3401
+
Pro
TGG
[ENA]
¢þ
>WENV180181561
OAWN01000031
[OAWN] human gut metagenome; faeces
52775
52851
+
Pro
TGG
[ENA]
¢þ
>WENV180468301
OBYJ01003002
[OBYJ] human gut metagenome; faeces
2009
1933
-
Pro
TGG
[ENA]
¢þ
>WENV180493064
OBZY01000169
[OBZY] human gut metagenome; faeces
9979
10055
+
Pro
TGG
[ENA]
¢þ
>WENV181187105
OENY01000030
[OENY] human gut metagenome; human gut
25749
25673
-
Pro
TGG
[ENA]
¢þ
>WENV181693639
OGPA01023143
[OGPA] human gut metagenome; faeces
779
855
+
Pro
TGG
[ENA]
¢þ
>WENV181919295
OGYI01000443
[OGYI] human gut metagenome; faeces
615
539
-
Pro
TGG
[ENA]
¢þ
>WENV181933027
OGYS01000303
[OGYS] human gut metagenome; faeces
31854
31778
-
Pro
TGG
[ENA]
¢þ
>WENV182277785
OHUR01041051
[OHUR] human gut metagenome; feces
496
572
+
Pro
TGG
[ENA]
¢þ
>WENV182283373
OHVJ01028766
[OHVJ] human gut metagenome; feces
356
280
-
Pro
TGG
[ENA]
¢þ
>WENV182285466
OHVN01003420
[OHVN] human gut metagenome; feces
469
545
+
Pro
TGG
[ENA]
¢þ
>WENV182287232
OHVS01000414
[OHVS] human gut metagenome; feces
15557
15481
-
Pro
TGG
[ENA]
¢þ
>WENV182305954
OHXC01000591
[OHXC] human gut metagenome; feces
15467
15391
-
Pro
TGG
[ENA]
¢þ
>WENV182320202
OHYH01026283
[OHYH] human gut metagenome; feces
673
597
-
Pro
TGG
[ENA]
¢þ
>WENV182324971
OHYS01000155
[OHYS] human gut metagenome; feces
32070
31994
-
Pro
TGG
[ENA]
¢þ
>WENV182328427
OHZC01003226
[OHZC] human gut metagenome; feces
402
478
+
Pro
TGG
[ENA]
¢þ
>WENV182353982
OIBN01000089
[OIBN] human gut metagenome; feces
30749
30825
+
Pro
TGG
[ENA]
¢þ
>WENV182400026
OIEP01000145
[OIEP] human gut metagenome; human gut
10014
10090
+
Pro
TGG
[ENA]
¢þ
>WENV182891641
OKSH01002502
[OKSH] human gut metagenome; faeces
13029
12953
-
Pro
TGG
[ENA]
¢þ
>WENV182949724
OKVQ01000074
[OKVQ] human gut metagenome; human gut
32875
32951
+
Pro
TGG
[ENA]
¢þ
>WENV183167710
OLOZ01000683
[OLOZ] human gut metagenome; faeces
5250
5174
-
Pro
TGG
[ENA]
¢þ
>WENV183182733
OLPK01000987
[OLPK] human gut metagenome; faeces
11265
11341
+
Pro
TGG
[ENA]
¢þ
>WENV183208352
OLQB01000809
[OLQB] human gut metagenome; faeces
23405
23329
-
Pro
TGG
[ENA]
¢þ
>C181051901
CP021389
Actinomycetota
Bifidobacterium breve NRBB57 [CP021389]
908593
908517
-
Pro
TGG
-
¡û
>W1910178848
BJFH01000001
Actinomycetota
Bifidobacterium moukalabense CD16 [BJFH]
508790
508714
-
Pro
TGG
[ENA]
¡û
>W1910179003
BJFK01000001
Actinomycetota
Bifidobacterium moukalabense EB44 [BJFK]
479643
479567
-
Pro
TGG
[ENA]
¡û
>W1910342804
FTRG01000004
Actinomycetota
Bifidobacterium longum [FTRG]
59825
59749
-
Pro
TGG
[ENA]
¡û
>W1910952956
NJNR01000036
Actinomycetota
Bifidobacterium longum N6D05 [NJNR]
18521
18445
-
Pro
TGG
[ENA]
¡û
>W1810161335
PJEG01000010
Actinomycetota
Bifidobacterium longum APC1461 [PJEG]
326369
326293
-
Pro
TGG
[ENA]
¡û
>W1810541381
QDIG01000002
Actinomycetota
Bifidobacterium longum DS7_3 [QDIG]
25821
25897
+
Pro
TGG
[ENA]
¡û
>C151011218
CP006712
Actinomycetota
Bifidobacterium breve JCM 7017 [CP006712]
915300
915224
-
Pro
TGG
[Ensembl]
¡û
>C151068372
CP010413
Actinomycetota
Bifidobacterium breve BR3 [CP010413]
1260986
1261062
+
Pro
TGG
-
¡û
>W1511681108
LFII01000014
Actinomycetota
Bifidobacterium breve BBRI4 [LFII]
26359
26283
-
Pro
TGG
[ENA]
¡û
>W1610028221
AWFU01000003
Actinomycetota
Bifidobacterium breve MCC 1454 [AWFU]
299604
299528
-
Pro
TGG
[ENA]
¡û
>W1610074905
BCXO01000027
Actinomycetota
Bifidobacterium breve [BCXO]
63983
63907
-
Pro
TGG
[ENA]
¡û
>W1610075122
BCXS01000063
Actinomycetota
Bifidobacterium breve [BCXS]
205562
205638
+
Pro
TGG
[ENA]
¡û
>W1610075192
BCXU01000003
Actinomycetota
Bifidobacterium breve [BCXU]
77430
77354
-
Pro
TGG
[ENA]
¡û
>W1610685332
LKSU01000004
Actinomycetota
Bifidobacterium longum subsp. longum [LKSU]
133184
133108
-
Pro
TGG
[ENA]
¡û
>W1610685411
LKSV01000029
Actinomycetota
Bifidobacterium longum subsp. longum [LKSV]
477
553
+
Pro
TGG
[ENA]
¡û
>W1710024233
AWFU01000003
Actinomycetota
Bifidobacterium breve MCC 1454 [AWFU]
299604
299528
-
Pro
TGG
[ENA]
¡û
>W1710072720
BCXO01000027
Actinomycetota
Bifidobacterium breve [BCXO]
63983
63907
-
Pro
TGG
[ENA]
¡û
>W1710072937
BCXS01000063
Actinomycetota
Bifidobacterium breve [BCXS]
205562
205638
+
Pro
TGG
[ENA]
¡û
>W1710073007
BCXU01000003
Actinomycetota
Bifidobacterium breve [BCXU]
77430
77354
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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