This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.285915 (121 seq.)
>W1711711012
MTAB01000021
Betaproteobacteria
Neisseria dumasiana 124861 [MTAB]
36656
36731
+
Phe
GAA
[ENA]
¡û
>W1711711035
MTAC01000001
Betaproteobacteria
Neisseria dumasiana 93087 [MTAC]
149899
149824
-
Phe
GAA
[ENA]
¡û
>W1711712084
MTBM01000020
Betaproteobacteria
Neisseria zoodegmatis [MTBM]
17374
17449
+
Phe
GAA
[ENA]
¡û
>W1711712130
MTBN01000013
Betaproteobacteria
Neisseria animaloris [MTBN]
26974
26899
-
Phe
GAA
[ENA]
¡û
>W1711712163
MTBO01000026
Betaproteobacteria
Neisseria dentiae [MTBO]
28394
28469
+
Phe
GAA
[ENA]
¡û
>W131180976
ARNN01000041
Betaproteobacteria
Vitreoscilla stercoraria DSM 513 [ARNN]
187703
187778
+
Phe
GAA
[ENA]
¡û
>W131180977
ARNN01000041
Betaproteobacteria
Vitreoscilla stercoraria DSM 513 [ARNN]
187815
187890
+
Phe
GAA
[ENA]
¡û
>WENV180284704
OBID01093336
[OBID] metagenome; sludge
469
544
+
Phe
GAA
[ENA]
¢þ
>WENV180725515
ODGS01000051
[ODGS] human metagenome; G_DNA_Attached/Keratinized gingiva
4724
4799
+
Phe
GAA
[ENA]
¢þ
>WENV180735893
ODHB01001513
[ODHB] human metagenome; G_DNA_Supragingival plaque
1010
1085
+
Phe
GAA
[ENA]
¢þ
>WENV180759253
ODHY01003570
[ODHY] human metagenome; G_DNA_Buccal mucosa
2069
2144
+
Phe
GAA
[ENA]
¢þ
>WENV180846017
ODKT01003981
[ODKT] human metagenome; G_DNA_Supragingival plaque
1055
1130
+
Phe
GAA
[ENA]
¢þ
>WENV180927749
ODTM01003226
[ODTM] human metagenome; G_DNA_Supragingival plaque
5198
5123
-
Phe
GAA
[ENA]
¢þ
>WENV180938665
ODTX01004771
[ODTX] human metagenome; G_DNA_Supragingival plaque
5197
5122
-
Phe
GAA
[ENA]
¢þ
>WENV180973168
ODUW01001692
[ODUW] human metagenome; G_DNA_Supragingival plaque
1089
1164
+
Phe
GAA
[ENA]
¢þ
>WENV180983127
ODVF01003866
[ODVF] human metagenome; G_DNA_Supragingival plaque
4
79
+
Phe
GAA
[ENA]
¢þ
>WENV180992337
ODVP01001157
[ODVP] human metagenome; G_DNA_Buccal mucosa
2514
2439
-
Phe
GAA
[ENA]
¢þ
>WENV181008320
ODWE01003938
[ODWE] human metagenome; G_DNA_Supragingival plaque
1121
1196
+
Phe
GAA
[ENA]
¢þ
>WENV181082664
OEAV01000235
[OEAV] human metagenome; G_DNA_Supragingival plaque
29777
29852
+
Phe
GAA
[ENA]
¢þ
>WENV181115325
OEEO01047021
[OEEO] human metagenome; G_DNA_Supragingival plaque
108
33
-
Phe
GAA
[ENA]
¢þ
>WENV181119889
OEFJ01000381
[OEFJ] human metagenome; G_DNA_Attached/Keratinized gingiva
16421
16346
-
Phe
GAA
[ENA]
¢þ
>WENV181160200
OEIK01003033
[OEIK] human metagenome; G_DNA_Supragingival plaque
5
80
+
Phe
GAA
[ENA]
¢þ
>W141251743
CBQV010000031
Betaproteobacteria
Kingella kingae AA068 [CBQV]
20391
20316
-
Phe
GAA
[ENA]
¡û
>W141251760
CBQV010000135
Betaproteobacteria
Kingella kingae AA068 [CBQV]
13736
13811
+
Phe
GAA
[ENA]
¡û
>W141251787
CBQW010000035
Betaproteobacteria
Kingella kingae AA105 [CBQW]
14811
14736
-
Phe
GAA
[ENA]
¡û
>W141251805
CBQW010000157
Betaproteobacteria
Kingella kingae AA105 [CBQW]
13733
13808
+
Phe
GAA
[ENA]
¡û
>W141252025
CBRB010000045
Betaproteobacteria
Kingella kingae BB016 [CBRB]
1845
1770
-
Phe
GAA
[ENA]
¡û
>W141252042
CBRB010000183
Betaproteobacteria
Kingella kingae BB016 [CBRB]
13736
13811
+
Phe
GAA
[ENA]
¡û
>W141252113
CBRD010000021
Betaproteobacteria
Kingella kingae BB114 [CBRD]
11467
11392
-
Phe
GAA
[ENA]
¡û
>W141252131
CBRD010000131
Betaproteobacteria
Kingella kingae BB114 [CBRD]
12826
12901
+
Phe
GAA
[ENA]
¡û
>W141252317
CBRH010000034
Betaproteobacteria
Kingella kingae KK88 [CBRH]
2828
2753
-
Phe
GAA
[ENA]
¡û
>W141252333
CBRH010000166
Betaproteobacteria
Kingella kingae KK88 [CBRH]
8323
8398
+
Phe
GAA
[ENA]
¡û
>W141252496
CBRM010000043
Betaproteobacteria
Kingella kingae KK141 [CBRM]
1826
1751
-
Phe
GAA
[ENA]
¡û
>W141252512
CBRM010000198
Betaproteobacteria
Kingella kingae KK141 [CBRM]
7285
7360
+
Phe
GAA
[ENA]
¡û
>W141252540
CBRN010000020
Betaproteobacteria
Kingella kingae KK101 [CBRN]
2823
2748
-
Phe
GAA
[ENA]
¡û
>W141252557
CBRN010000076
Betaproteobacteria
Kingella kingae KK101 [CBRN]
13739
13814
+
Phe
GAA
[ENA]
¡û
>W141252682
CBRQ010000050
Betaproteobacteria
Kingella kingae KK93 [CBRQ]
1836
1761
-
Phe
GAA
[ENA]
¡û
>W141252698
CBRQ010000189
Betaproteobacteria
Kingella kingae KK93 [CBRQ]
13735
13810
+
Phe
GAA
[ENA]
¡û
>W141252725
CBRR010000040
Betaproteobacteria
Kingella kingae BB631 [CBRR]
2819
2744
-
Phe
GAA
[ENA]
¡û
>W141252768
CBRS010000055
Betaproteobacteria
Kingella kingae KK97 [CBRS]
2812
2737
-
Phe
GAA
[ENA]
¡û
>W141252783
CBRS010000231
Betaproteobacteria
Kingella kingae KK97 [CBRS]
13739
13814
+
Phe
GAA
[ENA]
¡û
>W141252809
CBRT010000046
Betaproteobacteria
Kingella kingae CC254 [CBRT]
1815
1740
-
Phe
GAA
[ENA]
¡û
>W141252851
CBRU010000045
Betaproteobacteria
Kingella kingae KK98 [CBRU]
1836
1761
-
Phe
GAA
[ENA]
¡û
>W141252867
CBRU010000224
Betaproteobacteria
Kingella kingae KK98 [CBRU]
13732
13807
+
Phe
GAA
[ENA]
¡û
>W141252940
CBRW010000048
Betaproteobacteria
Kingella kingae D2363 [CBRW]
2828
2753
-
Phe
GAA
[ENA]
¡û
>W141252956
CBRW010000214
Betaproteobacteria
Kingella kingae D2363 [CBRW]
13735
13810
+
Phe
GAA
[ENA]
¡û
>W141252985
CBRX010000045
Betaproteobacteria
Kingella kingae KK189 [CBRX]
1829
1754
-
Phe
GAA
[ENA]
¡û
>W141253000
CBRX010000194
Betaproteobacteria
Kingella kingae KK189 [CBRX]
13725
13800
+
Phe
GAA
[ENA]
¡û
>W141253028
CBRY010000037
Betaproteobacteria
Kingella kingae D7330 [CBRY]
8109
8034
-
Phe
GAA
[ENA]
¡û
>W141253045
CBRY010000149
Betaproteobacteria
Kingella kingae D7330 [CBRY]
13734
13809
+
Phe
GAA
[ENA]
¡û
>W141253074
CBRZ010000018
Betaproteobacteria
Kingella kingae KK260 [CBRZ]
2828
2753
-
Phe
GAA
[ENA]
¡û
>W141253091
CBRZ010000067
Betaproteobacteria
Kingella kingae KK260 [CBRZ]
13737
13812
+
Phe
GAA
[ENA]
¡û
>W141253120
CBSA010000062
Betaproteobacteria
Kingella kingae KK3 [CBSA]
2823
2748
-
Phe
GAA
[ENA]
¡û
>W141253137
CBSA010000267
Betaproteobacteria
Kingella kingae KK3 [CBSA]
13718
13793
+
Phe
GAA
[ENA]
¡û
>W141253206
CBSC010000013
Betaproteobacteria
Kingella kingae KK6 [CBSC]
18470
18395
-
Phe
GAA
[ENA]
¡û
>W141253224
CBSC010000054
Betaproteobacteria
Kingella kingae KK6 [CBSC]
13736
13811
+
Phe
GAA
[ENA]
¡û
>W141253304
CBSE010000040
Betaproteobacteria
Kingella kingae KK56 [CBSE]
14792
14717
-
Phe
GAA
[ENA]
¡û
>W141253321
CBSE010000171
Betaproteobacteria
Kingella kingae KK56 [CBSE]
13731
13806
+
Phe
GAA
[ENA]
¡û
>W141253448
CBSH010000009
Betaproteobacteria
Kingella kingae KK83 [CBSH]
10576
10501
-
Phe
GAA
[ENA]
¡û
>W141253464
CBSH010000040
Betaproteobacteria
Kingella kingae KK83 [CBSH]
13740
13815
+
Phe
GAA
[ENA]
¡û
>W141253492
CBSI010000006
Betaproteobacteria
Kingella kingae KK145 [CBSI]
26627
26552
-
Phe
GAA
[ENA]
¡û
>W141253510
CBSI010000032
Betaproteobacteria
Kingella kingae KK145 [CBSI]
13740
13815
+
Phe
GAA
[ENA]
¡û
>W141253538
CBSJ010000005
Betaproteobacteria
Kingella kingae KK156 [CBSJ]
27935
27860
-
Phe
GAA
[ENA]
¡û
>W141253556
CBSJ010000029
Betaproteobacteria
Kingella kingae KK156 [CBSJ]
13740
13815
+
Phe
GAA
[ENA]
¡û
>W141253585
CBSK010000045
Betaproteobacteria
Kingella kingae KK171 [CBSK]
2826
2751
-
Phe
GAA
[ENA]
¡û
>W141253601
CBSK010000184
Betaproteobacteria
Kingella kingae KK171 [CBSK]
13731
13806
+
Phe
GAA
[ENA]
¡û
>W141253628
CBSL010000045
Betaproteobacteria
Kingella kingae KK242 [CBSL]
1838
1763
-
Phe
GAA
[ENA]
¡û
>W141253645
CBSL010000228
Betaproteobacteria
Kingella kingae KK242 [CBSL]
6987
7062
+
Phe
GAA
[ENA]
¡û
>W141253672
CBSM010000020
Betaproteobacteria
Kingella kingae KK274 [CBSM]
2826
2751
-
Phe
GAA
[ENA]
¡û
>W141253689
CBSM010000077
Betaproteobacteria
Kingella kingae KK274 [CBSM]
13739
13814
+
Phe
GAA
[ENA]
¡û
>W141253763
CBSO010000023
Betaproteobacteria
Kingella kingae KK113 [CBSO]
8086
8011
-
Phe
GAA
[ENA]
¡û
>W141253780
CBSO010000120
Betaproteobacteria
Kingella kingae KK113 [CBSO]
12834
12909
+
Phe
GAA
[ENA]
¡û
>W141253807
CBSP010000030
Betaproteobacteria
Kingella kingae PV1748 [CBSP]
2824
2749
-
Phe
GAA
[ENA]
¡û
>W141253824
CBSP010000151
Betaproteobacteria
Kingella kingae PV1748 [CBSP]
12813
12888
+
Phe
GAA
[ENA]
¡û
>W141253852
CBSQ010000033
Betaproteobacteria
Kingella kingae Vir5453 [CBSQ]
20388
20313
-
Phe
GAA
[ENA]
¡û
>W141253870
CBSQ010000121
Betaproteobacteria
Kingella kingae Vir5453 [CBSQ]
13737
13812
+
Phe
GAA
[ENA]
¡û
>W141253898
CBSR010000043
Betaproteobacteria
Kingella kingae KK60 [CBSR]
2829
2754
-
Phe
GAA
[ENA]
¡û
>W141253915
CBSR010000195
Betaproteobacteria
Kingella kingae KK60 [CBSR]
13731
13806
+
Phe
GAA
[ENA]
¡û
>W141253942
CBSS010000049
Betaproteobacteria
Kingella kingae KK128 [CBSS]
2828
2753
-
Phe
GAA
[ENA]
¡û
>W141253959
CBSS010000190
Betaproteobacteria
Kingella kingae KK128 [CBSS]
13728
13803
+
Phe
GAA
[ENA]
¡û
>W141254577
CBTD010000040
Betaproteobacteria
Kingella kingae KK75 [CBTD]
2822
2747
-
Phe
GAA
[ENA]
¡û
>W141254594
CBTD010000168
Betaproteobacteria
Kingella kingae KK75 [CBTD]
13734
13809
+
Phe
GAA
[ENA]
¡û
>W141254621
CBTE010000060
Betaproteobacteria
Kingella kingae KK190 [CBTE]
1836
1761
-
Phe
GAA
[ENA]
¡û
>W141254636
CBTE010000228
Betaproteobacteria
Kingella kingae KK190 [CBTE]
13731
13806
+
Phe
GAA
[ENA]
¡û
>W141254663
CBTF010000010
Betaproteobacteria
Kingella kingae KK199 [CBTF]
26369
26294
-
Phe
GAA
[ENA]
¡û
>W141254681
CBTF010000043
Betaproteobacteria
Kingella kingae KK199 [CBTF]
13740
13815
+
Phe
GAA
[ENA]
¡û
>W141254708
CBTG010000023
Betaproteobacteria
Kingella kingae KK411 [CBTG]
2832
2757
-
Phe
GAA
[ENA]
¡û
>W141266061
CCJT01000001
Betaproteobacteria
Kingella kingae [CCJT]
95943
95868
-
Phe
GAA
[ENA]
¡û
>W141266081
CCJT01000012
Betaproteobacteria
Kingella kingae [CCJT]
127154
127229
+
Phe
GAA
[ENA]
¡û
>C181037698
CP019448
Betaproteobacteria
Simonsiella muelleri ATCC 29453 [CP019448]
798225
798150
-
Phe
GAA
-
¡û
>C181038324
CP019644
Betaproteobacteria
Vitreoscilla sp. C1 [CP019644]
1856754
1856679
-
Phe
GAA
-
¡û
>C181038325
CP019644
Betaproteobacteria
Vitreoscilla sp. C1 [CP019644]
1856642
1856567
-
Phe
GAA
-
¡û
>C181061501
CP022278
Betaproteobacteria
Neisseria chenwenguii 10023 [CP022278]
757996
757921
-
Phe
GAA
-
¡û
>C181212639
LS483426
Betaproteobacteria
Kingella kingae NCTC10529 [LS483426]
693338
693263
-
Phe
GAA
-
¡û
>C181212652
LS483426
Betaproteobacteria
Kingella kingae NCTC10529 [LS483426]
260104
260029
-
Phe
GAA
-
¡û
>C181224101
LT906434
Betaproteobacteria
Neisseria zoodegmatis NCTC12230 [LT906434]
899775
899850
+
Phe
GAA
-
¡û
>C191211098
LR134440
Betaproteobacteria
Neisseria animaloris NCTC12228 [LR134440]
1939522
1939597
+
Phe
GAA
-
¡û
>C191214485
LR134533
Betaproteobacteria
Neisseria weaveri NCTC12742 [LR134533]
1114781
1114706
-
Phe
GAA
-
¡û
>W141816830
JQKE01000012
Betaproteobacteria
Stenoxybacter acetivorans DSM 19021 [JQKE]
54596
54521
-
Phe
GAA
[ENA]
¡û
>W1911417563
NWZE01000009
Betaproteobacteria
Neisseria meningitidis INS-Nm1066 [NWZE]
48530
48605
+
Phe
GAA
[ENA]
¡û
>W1810052194
PDBT02000026
Betaproteobacteria
Neisseria sp. N95_16 [PDBT]
15149
15074
-
Phe
GAA
[ENA]
¡û
>W1810120618
PHTC01000002
Betaproteobacteria
Neisseria sp. N177_16 [PHTC]
30081
30006
-
Phe
GAA
[ENA]
¡û
>W1810227229
POXE01000014
Betaproteobacteria
Neisseria weaveri C2009028987 [POXE]
12671
12746
+
Phe
GAA
[ENA]
¡û
>W1810227279
POXF01000011
Betaproteobacteria
Neisseria weaveri C2009035459 [POXF]
14105
14180
+
Phe
GAA
[ENA]
¡û
>W1810227437
POXI01000008
Betaproteobacteria
Neisseria weaveri C2010015191 [POXI]
12303
12378
+
Phe
GAA
[ENA]
¡û
>W1810228055
POXU01000009
Betaproteobacteria
Neisseria weaveri C2013013825 [POXU]
12665
12740
+
Phe
GAA
[ENA]
¡û
>W1810228446
POYC01000003
Betaproteobacteria
Neisseria animaloris C2015003240 [POYC]
147985
148060
+
Phe
GAA
[ENA]
¡û
>W1810390561
PXYY01000091
Betaproteobacteria
Neisseria iguanae ATCC 51483 [PXYY]
5214
5289
+
Phe
GAA
[ENA]
¡û
>W10111246
ADCY01000088
Betaproteobacteria
Simonsiella muelleri ATCC 29453 [ADCY]
2218
2143
-
Phe
GAA
[ENA]
¡û
>W10112088
ADEA01000028
Betaproteobacteria
Neisseria sp. oral taxon 014 oral taxon 014 str. F0314 [ADEA]
70885
70810
-
Phe
GAA
[ENA]
¡û
>W11114097
ADCY01000088
Betaproteobacteria
Simonsiella muelleri ATCC 29453 [ADCY]
2218
2143
-
Phe
GAA
[ENA]
¡û
>W11115065
ADEA01000028
Betaproteobacteria
Neisseria sp. oral taxon 014 oral taxon 014 str. F0314 [ADEA]
70885
70810
-
Phe
GAA
[ENA]
¡û
>W1511398415
JTDO01000019
Betaproteobacteria
Neisseria arctica KH1503 [JTDO]
11683
11608
-
Phe
GAA
[ENA]
¡û
>W11175929
AFWQ01000027
Betaproteobacteria
Neisseria weaveri LMG 5135 [AFWQ]
12192
12267
+
Phe
GAA
[ENA]
¡û
>W11175960
AFWR01000025
Betaproteobacteria
Neisseria weaveri ATCC 51223 [AFWR]
12187
12262
+
Phe
GAA
[ENA]
¡û
>W11177496
AGAY01000073
Betaproteobacteria
Neisseria shayeganii 871 [AGAY]
12347
12422
+
Phe
GAA
[ENA]
¡û
>C161109148
LT571436
Betaproteobacteria
Neisseria weaveri NCTC13585 [LT571436]
1826602
1826527
-
Phe
GAA
[Ensembl]
¡û
>W121060774
AJGB01000050
Betaproteobacteria
Kingella kingae PYKK081 [AJGB]
86280
86355
+
Phe
GAA
[ENA]
¡û
>W121060782
AJGB01000054
Betaproteobacteria
Kingella kingae PYKK081 [AJGB]
96030
95955
-
Phe
GAA
[ENA]
¡û
>W121110583
ALIJ01000062
Betaproteobacteria
Kingella kingae 11220434 [ALIJ]
13724
13799
+
Phe
GAA
[ENA]
¡û
>W121110595
ALIJ01000073
Betaproteobacteria
Kingella kingae 11220434 [ALIJ]
27923
27848
-
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK