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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.285953 (33 seq.)
>W1711767459
MUZV01000007
Gammaproteobacteria
Cognaticolwellia aestuarii [MUZV]
182243
182168
-
Arg
CCT
[ENA]
¡û
>W1711947415
NBOC01000001
Gammaproteobacteria
Colwellia chukchiensis [NBOC]
189562
189487
-
Arg
CCT
[ENA]
¡û
>W1711947471
NBOD01000002
Gammaproteobacteria
Cognaticolwellia aestuarii [NBOD]
437826
437901
+
Arg
CCT
[ENA]
¡û
>W1711947631
NBOF01000002
Gammaproteobacteria
Cognaticolwellia mytili [NBOF]
568582
568657
+
Arg
CCT
[ENA]
¡û
>C171034450
CP014943
Gammaproteobacteria
Colwellia sp. PAMC 21821 [CP014943]
1115221
1115296
+
Arg
CCT
-
¡û
>C171108412
CP020465
Gammaproteobacteria
Cognaticolwellia beringensis NB097-1 [CP020465]
347582
347507
-
Arg
CCT
-
¡û
>WENV182540198
OJAF01000001
[OJAF] seawater metagenome; Sea water
15317
15242
-
Arg
CCT
[ENA]
¢þ
>WENV182542758
OJAZ01001719
[OJAZ] seawater metagenome; Sea water
6250
6325
+
Arg
CCT
[ENA]
¢þ
>WENV182545069
OJBM01000005
[OJBM] seawater metagenome; Sea water
53752
53677
-
Arg
CCT
[ENA]
¢þ
>WENV182547422
OJBS01003942
[OJBS] seawater metagenome; Sea water
875
800
-
Arg
CCT
[ENA]
¢þ
>WENV182549278
OJBY01000119
[OJBY] seawater metagenome; Sea water
3211
3286
+
Arg
CCT
[ENA]
¢þ
>WENV182550239
OJBZ01017047
[OJBZ] seawater metagenome; Sea water
725
800
+
Arg
CCT
[ENA]
¢þ
>WENV182556732
OJDH01000017
[OJDH] seawater metagenome; Sea water
29423
29498
+
Arg
CCT
[ENA]
¢þ
>WENV182558734
OJDN01001947
[OJDN] seawater metagenome; Sea water
4510
4585
+
Arg
CCT
[ENA]
¢þ
>WENV182560055
OJDR01004794
[OJDR] seawater metagenome; Sea water
473
398
-
Arg
CCT
[ENA]
¢þ
>WENV182561218
OJDV01016732
[OJDV] seawater metagenome; Sea water
1002
927
-
Arg
CCT
[ENA]
¢þ
>WENV182568266
OJET01000007
[OJET] seawater metagenome; Sea water
91852
91927
+
Arg
CCT
[ENA]
¢þ
>WENV182577397
OJGE01000029
[OJGE] seawater metagenome; Sea water
134
59
-
Arg
CCT
[ENA]
¢þ
>WENV182579721
OJGT01000023
[OJGT] seawater metagenome; Sea water
41277
41202
-
Arg
CCT
[ENA]
¢þ
>WENV182585152
OJHH01002421
[OJHH] seawater metagenome; Sea water
660
585
-
Arg
CCT
[ENA]
¢þ
>WENV182587966
OJHO01000405
[OJHO] seawater metagenome; Sea water
15829
15754
-
Arg
CCT
[ENA]
¢þ
>WENV182590652
OJIJ01002297
[OJIJ] seawater metagenome; Sea water
1116
1041
-
Arg
CCT
[ENA]
¢þ
>WENV183055476
OLHD01000001
[OLHD] seawater metagenome; Sea water
224699
224774
+
Arg
CCT
[ENA]
¢þ
>WENV183055705
OLHF01000135
[OLHF] seawater metagenome; Sea water
4461
4536
+
Arg
CCT
[ENA]
¢þ
>WENV183059776
OLHV01003238
[OLHV] seawater metagenome; Sea water
1276
1351
+
Arg
CCT
[ENA]
¢þ
>WENV183064905
OLII01003000
[OLII] seawater metagenome; Sea water
2786
2861
+
Arg
CCT
[ENA]
¢þ
>WENV183522234
OMOM01000995
[OMOM] seawater metagenome; Sea water
202
127
-
Arg
CCT
[ENA]
¢þ
>WENV170646712
JQIA01001904
[JQIA] marine sediment metagenome; oil-polluted sediment collected from 3 locations (0.5 km, 0.7 km and 0.9 km) around wellhead
4505
4580
+
Arg
CCT
[ENA]
¢þ
>C181169979
CP028924
Gammaproteobacteria
Colwellia sp. Arc7-D [CP028924]
778248
778173
-
Arg
CCT
-
¡û
>C191128352
CP034660
Gammaproteobacteria
Colwellia sp. Arc7-635 [CP034660]
3963281
3963356
+
Arg
CCT
-
¡û
>C191130457
CP034759
Gammaproteobacteria
Litorilituus sediminis JCM 17549 [CP034759]
1263253
1263328
+
Arg
CCT
-
¡û
>W1911770220
QXIO01000005
Gammaproteobacteria
Colwellia sp. RSH04 [QXIO]
24332
24257
-
Arg
CCT
[ENA]
¡û
>W1710545226
FOBI01000001
Gammaproteobacteria
Colwellia chukchiensis [FOBI]
588901
588976
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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