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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.285954 (123 seq.)
>W1711078259
LSMS01000033
Gammaproteobacteria
Colwellia sp. Phe_37 [LSMS]
2543
2618
+
Phe
GAA
[ENA]
¡û
>W1711486046
MKEK01000001
Gammaproteobacteria
Rheinheimera salexigens KH87 [MKEK]
3107926
3107851
-
Phe
GAA
[ENA]
¡û
>W1711486048
MKEK01000001
Gammaproteobacteria
Rheinheimera salexigens KH87 [MKEK]
3107616
3107541
-
Phe
GAA
[ENA]
¡û
>W1711767441
MUZV01000004
Gammaproteobacteria
Cognaticolwellia aestuarii [MUZV]
195714
195789
+
Phe
GAA
[ENA]
¡û
>W1711767449
MUZV01000005
Gammaproteobacteria
Cognaticolwellia aestuarii [MUZV]
128264
128189
-
Phe
GAA
[ENA]
¡û
>W1711795592
MWPV01000001
Gammaproteobacteria
Pseudoalteromonas ulvae [MWPV]
661357
661432
+
Phe
GAA
[ENA]
¡û
>W1711795594
MWPV01000001
Gammaproteobacteria
Pseudoalteromonas ulvae [MWPV]
661603
661678
+
Phe
GAA
[ENA]
¡û
>W1711795596
MWPV01000001
Gammaproteobacteria
Pseudoalteromonas ulvae [MWPV]
661833
661908
+
Phe
GAA
[ENA]
¡û
>W1711795598
MWPV01000001
Gammaproteobacteria
Pseudoalteromonas ulvae [MWPV]
662107
662182
+
Phe
GAA
[ENA]
¡û
>W1711947416
NBOC01000002
Gammaproteobacteria
Colwellia chukchiensis [NBOC]
246328
246403
+
Phe
GAA
[ENA]
¡û
>W1711947421
NBOC01000002
Gammaproteobacteria
Colwellia chukchiensis [NBOC]
192782
192707
-
Phe
GAA
[ENA]
¡û
>W1711947473
NBOD01000002
Gammaproteobacteria
Cognaticolwellia aestuarii [NBOD]
128347
128272
-
Phe
GAA
[ENA]
¡û
>W1711947498
NBOD01000005
Gammaproteobacteria
Cognaticolwellia aestuarii [NBOD]
195746
195821
+
Phe
GAA
[ENA]
¡û
>W1711947563
NBOE01000006
Gammaproteobacteria
Colwellia polaris [NBOE]
83412
83487
+
Phe
GAA
[ENA]
¡û
>W1711947567
NBOE01000006
Gammaproteobacteria
Colwellia polaris [NBOE]
26487
26412
-
Phe
GAA
[ENA]
¡û
>W1711947633
NBOF01000003
Gammaproteobacteria
Cognaticolwellia mytili [NBOF]
448517
448592
+
Phe
GAA
[ENA]
¡û
>W1711947654
NBOF01000003
Gammaproteobacteria
Cognaticolwellia mytili [NBOF]
371081
371006
-
Phe
GAA
[ENA]
¡û
>W1711947687
NBOG01000001
Gammaproteobacteria
Cognaticolwellia sediminilitoris [NBOG]
244295
244370
+
Phe
GAA
[ENA]
¡û
>W1711947690
NBOG01000001
Gammaproteobacteria
Cognaticolwellia sediminilitoris [NBOG]
191863
191788
-
Phe
GAA
[ENA]
¡û
>C171034459
CP014943
Gammaproteobacteria
Colwellia sp. PAMC 21821 [CP014943]
2954787
2954862
+
Phe
GAA
-
¡û
>C171034497
CP014943
Gammaproteobacteria
Colwellia sp. PAMC 21821 [CP014943]
2900322
2900247
-
Phe
GAA
-
¡û
>C171034523
CP014944
Gammaproteobacteria
Colwellia sp. PAMC 20917 [CP014944]
1601458
1601533
+
Phe
GAA
-
¡û
>C171034566
CP014944
Gammaproteobacteria
Colwellia sp. PAMC 20917 [CP014944]
1588719
1588644
-
Phe
GAA
-
¡û
>C171108359
CP020465
Gammaproteobacteria
Cognaticolwellia beringensis NB097-1 [CP020465]
2943618
2943693
+
Phe
GAA
-
¡û
>C171108397
CP020465
Gammaproteobacteria
Cognaticolwellia beringensis NB097-1 [CP020465]
2891687
2891612
-
Phe
GAA
-
¡û
>w014288
AAOH01000028
Gammaproteobacteria
Pseudoalteromonas tunicata D2 [AAOH]
424
347
-
Phe
GAA
[ENA]
¡û
>w014236
AAOH01000006
Gammaproteobacteria
Pseudoalteromonas tunicata D2 [AAOH]
84391
84468
+
Phe
GAA
[ENA]
¡û
>WENV182540218
OJAF01000296
[OJAF] seawater metagenome; Sea water
1911
1986
+
Phe
GAA
[ENA]
¢þ
>WENV182542033
OJAV01000570
[OJAV] seawater metagenome; Sea water
7260
7185
-
Phe
GAA
[ENA]
¢þ
>WENV182542509
OJAY01006861
[OJAY] seawater metagenome; Sea water
613
538
-
Phe
GAA
[ENA]
¢þ
>WENV182542655
OJAZ01000323
[OJAZ] seawater metagenome; Sea water
24232
24304
+
Phe
GAA
[ENA]
¢þ
>WENV182543622
OJBC01000001
[OJBC] seawater metagenome; Sea water
237027
237102
+
Phe
GAA
[ENA]
¢þ
>WENV182544573
OJBI01000008
[OJBI] seawater metagenome; Sea water
55802
55877
+
Phe
GAA
[ENA]
¢þ
>WENV182544594
OJBI01000049
[OJBI] seawater metagenome; Sea water
22295
22220
-
Phe
GAA
[ENA]
¢þ
>WENV182544804
OJBJ01004683
[OJBJ] seawater metagenome; Sea water
71
146
+
Phe
GAA
[ENA]
¢þ
>WENV182545072
OJBM01000010
[OJBM] seawater metagenome; Sea water
41131
41056
-
Phe
GAA
[ENA]
¢þ
>WENV182547386
OJBS01001563
[OJBS] seawater metagenome; Sea water
1288
1213
-
Phe
GAA
[ENA]
¢þ
>WENV182549208
OJBY01000002
[OJBY] seawater metagenome; Sea water
40083
40008
-
Phe
GAA
[ENA]
¢þ
>WENV182549895
OJBZ01000279
[OJBZ] seawater metagenome; Sea water
6440
6515
+
Phe
GAA
[ENA]
¢þ
>WENV182549940
OJBZ01000653
[OJBZ] seawater metagenome; Sea water
6180
6255
+
Phe
GAA
[ENA]
¢þ
>WENV182549991
OJBZ01001244
[OJBZ] seawater metagenome; Sea water
3373
3298
-
Phe
GAA
[ENA]
¢þ
>WENV182552399
OJCK01000020
[OJCK] seawater metagenome; Sea water
56879
56954
+
Phe
GAA
[ENA]
¢þ
>WENV182554594
OJCW01000059
[OJCW] seawater metagenome; Sea water
31478
31553
+
Phe
GAA
[ENA]
¢þ
>WENV182554622
OJCW01000205
[OJCW] seawater metagenome; Sea water
20502
20577
+
Phe
GAA
[ENA]
¢þ
>WENV182554919
OJCX01009184
[OJCX] seawater metagenome; Sea water
49
124
+
Phe
GAA
[ENA]
¢þ
>WENV182555143
OJCY01004514
[OJCY] seawater metagenome; Sea water
1617
1542
-
Phe
GAA
[ENA]
¢þ
>WENV182556782
OJDH01000075
[OJDH] seawater metagenome; Sea water
49844
49769
-
Phe
GAA
[ENA]
¢þ
>WENV182557100
OJDI01000917
[OJDI] seawater metagenome; Sea water
80
5
-
Phe
GAA
[ENA]
¢þ
>WENV182557737
OJDK01005214
[OJDK] seawater metagenome; Sea water
347
422
+
Phe
GAA
[ENA]
¢þ
>WENV182557814
OJDL01000040
[OJDL] seawater metagenome; Sea water
8740
8665
-
Phe
GAA
[ENA]
¢þ
>WENV182559208
OJDO01003985
[OJDO] seawater metagenome; Sea water
1835
1760
-
Phe
GAA
[ENA]
¢þ
>WENV182559953
OJDR01000008
[OJDR] seawater metagenome; Sea water
101553
101478
-
Phe
GAA
[ENA]
¢þ
>WENV182559996
OJDR01000122
[OJDR] seawater metagenome; Sea water
304
229
-
Phe
GAA
[ENA]
¢þ
>WENV182561191
OJDV01012940
[OJDV] seawater metagenome; Sea water
168
243
+
Phe
GAA
[ENA]
¢þ
>WENV182562228
OJDZ01000147
[OJDZ] seawater metagenome; Sea water
45369
45294
-
Phe
GAA
[ENA]
¢þ
>WENV182562328
OJDZ01000904
[OJDZ] seawater metagenome; Sea water
2486
2411
-
Phe
GAA
[ENA]
¢þ
>WENV182562413
OJDZ01002453
[OJDZ] seawater metagenome; Sea water
1541
1616
+
Phe
GAA
[ENA]
¢þ
>WENV182565110
OJEG01002144
[OJEG] seawater metagenome; Sea water
1499
1424
-
Phe
GAA
[ENA]
¢þ
>WENV182565231
OJEH01000598
[OJEH] seawater metagenome; Sea water
1362
1437
+
Phe
GAA
[ENA]
¢þ
>WENV182565516
OJEH01009788
[OJEH] seawater metagenome; Sea water
1688
1613
-
Phe
GAA
[ENA]
¢þ
>WENV182565877
OJEI01000652
[OJEI] seawater metagenome; Sea water
6849
6924
+
Phe
GAA
[ENA]
¢þ
>WENV182566095
OJEJ01000036
[OJEJ] seawater metagenome; Sea water
67037
66962
-
Phe
GAA
[ENA]
¢þ
>WENV182567131
OJEN01004241
[OJEN] seawater metagenome; Sea water
1112
1037
-
Phe
GAA
[ENA]
¢þ
>WENV182567535
OJEO01005298
[OJEO] seawater metagenome; Sea water
1734
1659
-
Phe
GAA
[ENA]
¢þ
>WENV182568275
OJET01000018
[OJET] seawater metagenome; Sea water
67282
67207
-
Phe
GAA
[ENA]
¢þ
>WENV182568944
OJEX01006978
[OJEX] seawater metagenome; Sea water
37
112
+
Phe
GAA
[ENA]
¢þ
>WENV182572327
OJFL01003475
[OJFL] seawater metagenome; Sea water
1874
1949
+
Phe
GAA
[ENA]
¢þ
>WENV182573283
OJFP01000612
[OJFP] seawater metagenome; Sea water
16332
16257
-
Phe
GAA
[ENA]
¢þ
>WENV182574717
OJFS01000756
[OJFS] seawater metagenome; Sea water
3203
3278
+
Phe
GAA
[ENA]
¢þ
>WENV182575126
OJFU01000038
[OJFU] seawater metagenome; Sea water
9041
8966
-
Phe
GAA
[ENA]
¢þ
>WENV182575153
OJFU01000260
[OJFU] seawater metagenome; Sea water
10581
10656
+
Phe
GAA
[ENA]
¢þ
>WENV182575508
OJFV01000011
[OJFV] seawater metagenome; Sea water
151206
151281
+
Phe
GAA
[ENA]
¢þ
>WENV182576097
OJFX01003036
[OJFX] seawater metagenome; Sea water
1531
1456
-
Phe
GAA
[ENA]
¢þ
>WENV182576962
OJGC01000015
[OJGC] seawater metagenome; Sea water
54549
54624
+
Phe
GAA
[ENA]
¢þ
>WENV182577403
OJGE01001150
[OJGE] seawater metagenome; Sea water
814
739
-
Phe
GAA
[ENA]
¢þ
>WENV182577717
OJGH01002751
[OJGH] seawater metagenome; Sea water
504
579
+
Phe
GAA
[ENA]
¢þ
>WENV182577859
OJGL01000478
[OJGL] seawater metagenome; Sea water
1696
1621
-
Phe
GAA
[ENA]
¢þ
>WENV182579688
OJGT01000007
[OJGT] seawater metagenome; Sea water
26038
26113
+
Phe
GAA
[ENA]
¢þ
>WENV182580117
OJGU01004179
[OJGU] seawater metagenome; Sea water
510
435
-
Phe
GAA
[ENA]
¢þ
>WENV182580310
OJGV01001707
[OJGV] seawater metagenome; Sea water
121
196
+
Phe
GAA
[ENA]
¢þ
>WENV182580821
OJGW01015319
[OJGW] seawater metagenome; Sea water
1227
1152
-
Phe
GAA
[ENA]
¢þ
>WENV182584417
OJHG01000201
[OJHG] seawater metagenome; Sea water
23889
23964
+
Phe
GAA
[ENA]
¢þ
>WENV182585122
OJHH01001622
[OJHH] seawater metagenome; Sea water
5274
5349
+
Phe
GAA
[ENA]
¢þ
>WENV182586522
OJHK01000901
[OJHK] seawater metagenome; Sea water
9401
9326
-
Phe
GAA
[ENA]
¢þ
>WENV182587497
OJHM01015299
[OJHM] seawater metagenome; Sea water
155
80
-
Phe
GAA
[ENA]
¢þ
>WENV182588793
OJHY01000025
[OJHY] seawater metagenome; Sea water
6438
6513
+
Phe
GAA
[ENA]
¢þ
>WENV182590633
OJIJ01000863
[OJIJ] seawater metagenome; Sea water
2010
2085
+
Phe
GAA
[ENA]
¢þ
>WENV182591867
OJIO01009349
[OJIO] seawater metagenome; Sea water
1651
1576
-
Phe
GAA
[ENA]
¢þ
>WENV182592639
OJIR01006391
[OJIR] seawater metagenome; Sea water
1792
1717
-
Phe
GAA
[ENA]
¢þ
>WENV182594128
OJIV01000553
[OJIV] seawater metagenome; Sea water
8787
8712
-
Phe
GAA
[ENA]
¢þ
>WENV183055472
OLHD01000001
[OLHD] seawater metagenome; Sea water
118804
118879
+
Phe
GAA
[ENA]
¢þ
>WENV183055485
OLHD01000016
[OLHD] seawater metagenome; Sea water
47358
47283
-
Phe
GAA
[ENA]
¢þ
>WENV183055690
OLHF01000076
[OLHF] seawater metagenome; Sea water
25389
25464
+
Phe
GAA
[ENA]
¢þ
>WENV183057598
OLHL01017382
[OLHL] seawater metagenome; Sea water
72
-1
-
Phe
GAA
[ENA]
¢þ
>WENV183057627
OLHM01000035
[OLHM] seawater metagenome; Sea water
42733
42808
+
Phe
GAA
[ENA]
¢þ
>WENV183057644
OLHM01000133
[OLHM] seawater metagenome; Sea water
23773
23698
-
Phe
GAA
[ENA]
¢þ
>WENV183057951
OLHN01000059
[OLHN] seawater metagenome; Sea water
15093
15018
-
Phe
GAA
[ENA]
¢þ
>WENV183057958
OLHN01000118
[OLHN] seawater metagenome; Sea water
6438
6513
+
Phe
GAA
[ENA]
¢þ
>WENV183058299
OLHP01003522
[OLHP] seawater metagenome; Sea water
1040
1115
+
Phe
GAA
[ENA]
¢þ
>WENV183059754
OLHV01002288
[OLHV] seawater metagenome; Sea water
2177
2252
+
Phe
GAA
[ENA]
¢þ
>WENV183060061
OLHW01007090
[OLHW] seawater metagenome; Sea water
901
826
-
Phe
GAA
[ENA]
¢þ
>WENV183064836
OLII01001189
[OLII] seawater metagenome; Sea water
7712
7787
+
Phe
GAA
[ENA]
¢þ
>WENV183522164
OMOM01000337
[OMOM] seawater metagenome; Sea water
9518
9593
+
Phe
GAA
[ENA]
¢þ
>WENV170780759
MAAB01019628
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
1390
1465
+
Phe
GAA
[ENA]
¢þ
>WENV170781169
MAAB01029590
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
7089
7164
+
Phe
GAA
[ENA]
¢þ
>WENV170781250
MAAB01030317
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
281
206
-
Phe
GAA
[ENA]
¢þ
>WENV170782905
MAAC01012017
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
3583
3508
-
Phe
GAA
[ENA]
¢þ
>WENV170783141
MAAC01014180
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
6626
6701
+
Phe
GAA
[ENA]
¢þ
>C181169939
CP028924
Gammaproteobacteria
Colwellia sp. Arc7-D [CP028924]
3415200
3415275
+
Phe
GAA
-
¡û
>C181169944
CP028924
Gammaproteobacteria
Colwellia sp. Arc7-D [CP028924]
3357107
3357032
-
Phe
GAA
-
¡û
>C191083303
CP031961
Gammaproteobacteria
Pseudoalteromonas tunicata D2 [CP031961,CP031962]
336681
336756
+
Phe
GAA
-
¡û
>C191128357
CP034660
Gammaproteobacteria
Colwellia sp. Arc7-635 [CP034660]
3573884
3573809
-
Phe
GAA
-
¡û
>C191128396
CP034660
Gammaproteobacteria
Colwellia sp. Arc7-635 [CP034660]
1056660
1056585
-
Phe
GAA
-
¡û
>W1910796182
MSCH01000003
Gammaproteobacteria
Psychrosphaera saromensis SA4-48 [MSCH]
1308858
1308933
+
Phe
GAA
[ENA]
¡û
>W1910796184
MSCH01000003
Gammaproteobacteria
Psychrosphaera saromensis SA4-48 [MSCH]
1322886
1322961
+
Phe
GAA
[ENA]
¡û
>W1910796186
MSCH01000003
Gammaproteobacteria
Psychrosphaera saromensis SA4-48 [MSCH]
1323164
1323239
+
Phe
GAA
[ENA]
¡û
>W1810154340
PIZK01000021
Gammaproteobacteria
Alteromonadales bacterium alter-6D02 [PIZK]
124801
124876
+
Phe
GAA
[ENA]
¡û
>W1810154342
PIZK01000021
Gammaproteobacteria
Alteromonadales bacterium alter-6D02 [PIZK]
125057
125132
+
Phe
GAA
[ENA]
¡û
>W1810154343
PIZK01000021
Gammaproteobacteria
Alteromonadales bacterium alter-6D02 [PIZK]
125176
125251
+
Phe
GAA
[ENA]
¡û
>W1511533777
JYNI01000062
Gammaproteobacteria
Thalassomonas actiniarum A5K-106 [JYNI]
25908
25833
-
Phe
GAA
[ENA]
¡û
>W1610917275
LSMS01000033
Gammaproteobacteria
Colwellia sp. Phe_37 [LSMS]
2543
2618
+
Phe
GAA
[ENA]
¡û
>W1710545232
FOBI01000002
Gammaproteobacteria
Colwellia chukchiensis [FOBI]
202231
202306
+
Phe
GAA
[ENA]
¡û
>W1710545235
FOBI01000002
Gammaproteobacteria
Colwellia chukchiensis [FOBI]
148685
148610
-
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK