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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.286057 (36 seq.)
>W1710856284
LLZH01000211
Actinomycetota
Actinoplanes awajinensis subsp. mycoplanecinus [LLZH]
66297
66222
-
Arg
CCT
[ENA]
¡û
>W1710863734
LMFJ01000001
Actinomycetota
Aeromicrobium sp. Root495 [LMFJ]
2528334
2528409
+
Arg
CCT
[ENA]
¡û
>W1710872632
LMMD01000002
Actinomycetota
Aeromicrobium sp. Leaf245 [LMMD]
283965
283892
-
Arg
CCT
[ENA]
¡û
>W1710873641
LMMY01000010
Actinomycetota
Aeromicrobium sp. Leaf272 [LMMY]
249794
249721
-
Arg
CCT
[ENA]
¡û
>W1710874214
LMNK01000003
Actinomycetota
Aeromicrobium sp. Leaf289 [LMNK]
265386
265313
-
Arg
CCT
[ENA]
¡û
>W1710874321
LMNM01000003
Actinomycetota
Aeromicrobium sp. Leaf291 [LMNM]
249819
249746
-
Arg
CCT
[ENA]
¡û
>W1711125347
LUNF01000069
Actinomycetota
Aeromicrobium sp. REDSEA-S32_B7 [LUNF]
106
181
+
Arg
CCT
[ENA]
¡û
>W1711388687
MEIA01000173
Actinomycetota
Couchioplanes caeruleus subsp. caeruleus [MEIA]
567
642
+
Arg
CCT
[ENA]
¡û
>W131171684
ARGK01000065
Actinomycetota
Salinispora pacifica CNS996 [ARGK]
4581
4506
-
Arg
CCT
[ENA]
¡û
>W131171769
ARGL01000083
Actinomycetota
Salinispora pacifica CNT045 [ARGL]
103366
103291
-
Arg
CCT
[ENA]
¡û
>W131173088
ARHK01000081
Actinomycetota
Salinispora pacifica CNT609 [ARHK]
5384
5459
+
Arg
CCT
[ENA]
¡û
>W131234025
AUKM01000004
Actinomycetota
Salinispora arenicola CNS299 [AUKM]
368015
368090
+
Arg
CCT
[ENA]
¡û
>C171131272
LT827010
Actinomycetota
Actinoplanes sp. SE50/110 [LT827010]
645779
645852
+
Arg
CCT
-
¡û
>W141218086
AZWA01000020
Actinomycetota
Salinispora pacifica CNT084 [AZWA]
679
754
+
Arg
CCT
[ENA]
¡û
>W141219100
AZWU01000019
Actinomycetota
Salinispora arenicola CNT005 [AZWU]
3170
3095
-
Arg
CCT
[ENA]
¡û
>WENV170728961
LULF01003540
[LULF] marine metagenome; Red Sea water column Station 169 - depth 500m
2465
2390
-
Arg
CCT
[ENA]
¢þ
>WENV170736242
LULM01000366
[LULM] marine metagenome; Red Sea water column Station 149 - depth 200m
106
181
+
Arg
CCT
[ENA]
¢þ
>WENV170738681
LULP01002009
[LULP] marine metagenome; Red Sea water column Station 149 - depth 25m
3328
3253
-
Arg
CCT
[ENA]
¢þ
>WENV170758984
LUMS01000805
[LUMS] marine metagenome; Red Sea water column Station 192 - depth 25m
106
181
+
Arg
CCT
[ENA]
¢þ
>C181078556
CP023298
Actinomycetota
Actinoplanes sp. SE50 [CP023298]
645778
645851
+
Arg
CCT
-
¡û
>C191026467
CP023865
Actinomycetota
Actinoplanes teichomyceticus ATCC 31121 [CP023865]
519833
519906
+
Arg
CCT
-
¡û
>W1910547317
FZNR01000003
Actinomycetota
Actinoplanes regularis DSM 43151 [FZNR]
114469
114543
+
Arg
CCT
[ENA]
¡û
>W1911693691
QLVF01000105
Actinomycetota
Aeromicrobium lacus CPCC 204604 [QLVF]
1898
1973
+
Arg
CCT
[ENA]
¡û
>W1810675419
QKKY01000105
Actinomycetota
Aeromicrobium sp. IBM16_104W [QKKY]
1898
1973
+
Arg
CCT
[ENA]
¡û
>W1511545128
JZKF01000048
Actinomycetota
Actinoplanes rectilineatus NRRL B-16090 [JZKF]
32524
32599
+
Arg
CCT
[ENA]
¡û
>C121007222
CP003170
Actinomycetota
Actinoplanes sp. SE50/110 [CP003170]
645777
645850
+
Arg
CCT
[Ensembl]
¡û
>C161036396
CP011502
Actinomycetota
Aeromicrobium erythreum AR18 [CP011502]
2640035
2639962
-
Arg
CCT
[Ensembl]
¡û
>W121055749
AIIH01000460
Actinomycetota
Salinispora pacifica CNT-133 [AIIH]
113
38
-
Arg
CCT
[ENA]
¡û
>W1610718665
LLZH01000211
Actinomycetota
Actinoplanes awajinensis subsp. mycoplanecinus [LLZH]
66297
66222
-
Arg
CCT
[ENA]
¡û
>W1610726080
LMFJ01000001
Actinomycetota
Aeromicrobium sp. Root495 [LMFJ]
2528334
2528409
+
Arg
CCT
[ENA]
¡û
>W1610734978
LMMD01000002
Actinomycetota
Aeromicrobium sp. Leaf245 [LMMD]
283965
283892
-
Arg
CCT
[ENA]
¡û
>W1610735987
LMMY01000010
Actinomycetota
Aeromicrobium sp. Leaf272 [LMMY]
249794
249721
-
Arg
CCT
[ENA]
¡û
>W1610736560
LMNK01000003
Actinomycetota
Aeromicrobium sp. Leaf289 [LMNK]
265386
265313
-
Arg
CCT
[ENA]
¡û
>W1610736667
LMNM01000003
Actinomycetota
Aeromicrobium sp. Leaf291 [LMNM]
249819
249746
-
Arg
CCT
[ENA]
¡û
>W1610936280
LUNF01000069
Actinomycetota
Aeromicrobium sp. REDSEA-S32_B7 [LUNF]
106
181
+
Arg
CCT
[ENA]
¡û
>W1710515947
FNCF01000001
Actinomycetota
Klenkia brasiliensis [FNCF]
251788
251713
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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