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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.286119 (38 seq.)
>W1711793128
MWLJ01000016
Alphaproteobacteria
Rhodomicrobium vannielii [MWLJ]
148594
148669
+
Ala
GGC
[ENA]
¡û
>W1711793169
MWLK01000012
Alphaproteobacteria
Rhodomicrobium sp. R_RK_3 vannielii [MWLK]
22870
22945
+
Ala
GGC
[ENA]
¡û
>C171036999
CP015210
Alphaproteobacteria
Cereibacter sphaeroides MBTLJ-13 [CP015210, CP015211]
2741639
2741714
+
Ala
GGC
-
¡û
>W131058639
ANFS01000012
Alphaproteobacteria
Rhodobacter sp. AKP1 [ANFS]
26189
26264
+
Ala
GGC
[ENA]
¡û
>W131216052
ATVN01000001
Alphaproteobacteria
Pseudorhodobacter ferrugineus DSM 5888 [ATVN]
212764
212689
-
Ala
GGC
[ENA]
¡û
>C019257
CP000661
Alphaproteobacteria
Cereibacter sphaeroides [CP000661]
100952
101027
+
Ala
GGC
[Ensembl]
¡û
>C019315
CP000577
Alphaproteobacteria
Cereibacter sphaeroides ATCC 17029 [CP000577, CP000578]
2788869
2788944
+
Ala
GGC
[Ensembl]
¡û
>WENV180001285
FLNX01001155
[FLNX] bioreactor metagenome; Moose rumen
8570
8645
+
Ala
GGC
[ENA]
¢þ
>WENV180002591
FLNY01002742
[FLNY] bioreactor metagenome; Moose rumen
4696
4621
-
Ala
GGC
[ENA]
¢þ
>WENV180231864
OBCO01000019
[OBCO] synthetic metagenome; purchased from BEI Resources HM-276D
446493
446418
-
Ala
GGC
[ENA]
¢þ
>WENV180232854
OBCP01000018
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
446521
446446
-
Ala
GGC
[ENA]
¢þ
>WENV180569658
OCLR01000276
[OCLR] synthetic metagenome; purchased from BEI Resources HM-276D
37690
37615
-
Ala
GGC
[ENA]
¢þ
>WENV180570621
OCLS01000320
[OCLS] synthetic metagenome; purchased from BEI Resources HM-276D
46629
46704
+
Ala
GGC
[ENA]
¢þ
>WENV180571234
OCLT01000023
[OCLT] synthetic metagenome; purchased from BEI Resources HM-276D
446486
446411
-
Ala
GGC
[ENA]
¢þ
>WENV180573451
OCLW01000020
[OCLW] synthetic metagenome; purchased from BEI Resources HM-276D
446514
446439
-
Ala
GGC
[ENA]
¢þ
>WENV180639542
OCRL01000025
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
446486
446411
-
Ala
GGC
[ENA]
¢þ
>WENV180640456
OCRM01000020
[OCRM] synthetic metagenome; purchased from BEI Resources HM-276D
446514
446439
-
Ala
GGC
[ENA]
¢þ
>W141237312
BBJC01000004
Alphaproteobacteria
Falsirhodobacter sp. alg1 [BBJC]
192119
192194
+
Ala
GGC
[ENA]
¡û
>C181017230
CP015287
Alphaproteobacteria
Cereibacter sphaeroides MBTLJ-20 [CP015287, CP015288]
2741608
2741683
+
Ala
GGC
-
¡û
>C181191115
CP030271
Alphaproteobacteria
Cereibacter sphaeroides 2.4.1 [CP030271, CP030272]
2741626
2741701
+
Ala
GGC
-
¡û
>C191079634
CP031750
Alphaproteobacteria
Cereibacter sphaeroides EBL0706 [CP031750, CP031751]
103971
104046
+
Ala
GGC
-
¡û
>C191151016
CP036419
Alphaproteobacteria
Cereibacter sphaeroides HJ [CP036419, CP036420]
2815934
2816009
+
Ala
GGC
-
¡û
>W09104721
AAME01000008
Alphaproteobacteria
Cereibacter sphaeroides ATCC 17025 [AAME]
67354
67279
-
Ala
GGC
[ENA]
¡û
>W09104762
AAMF01000001
Alphaproteobacteria
Cereibacter sphaeroides ATCC 17029 [AAMF]
1070341
1070266
-
Ala
GGC
[ENA]
¡û
>W1910574836
JQHS01000003
Alphaproteobacteria
Falsirhodobacter deserti W402 [JQHS]
85660
85585
-
Ala
GGC
[ENA]
¡û
>W1911491926
OAOQ01000007
Alphaproteobacteria
Cereibacter ovatus JA234 [OAOQ]
111202
111277
+
Ala
GGC
[ENA]
¡û
>W1911749449
QWGP01000010
Alphaproteobacteria
Cereibacter sphaeroides FY [QWGP]
125864
125789
-
Ala
GGC
[ENA]
¡û
>W1911766276
QXDK01000007
Alphaproteobacteria
Cereibacter sphaeroides SCJ [QXDK]
45479
45554
+
Ala
GGC
[ENA]
¡û
>W1810119948
PHSI01000037
Alphaproteobacteria
Cereibacter azotoformans YLK20 [PHSI]
36372
36447
+
Ala
GGC
[ENA]
¡û
>W1810445004
PZKF01000022
Alphaproteobacteria
Phaeovulum veldkampii DSM 11550 [PZKF]
37723
37798
+
Ala
GGC
[ENA]
¡û
>W1810445061
PZKG01000215
Alphaproteobacteria
Cereibacter changlensis JA139 [PZKG]
1506
1581
+
Ala
GGC
[ENA]
¡û
>W1810463833
PZZW01000003
Alphaproteobacteria
Cereibacter johrii JA192 [PZZW]
567559
567634
+
Ala
GGC
[ENA]
¡û
>W1810686002
QKZS01000008
Alphaproteobacteria
Cereibacter changlensis DSM 18774 [QKZS]
112968
112893
-
Ala
GGC
[ENA]
¡û
>W1810699103
QMCC01000004
Alphaproteobacteria
Cereibacter johrii CDR-SL 7Cii [QMCC]
446962
446887
-
Ala
GGC
[ENA]
¡û
>W1511698479
LGHV01000014
Alphaproteobacteria
Pseudorhodobacter ferrugineus LMG 22047 [LGHV]
213379
213304
-
Ala
GGC
[ENA]
¡û
>W11160173
AFER01000001
Alphaproteobacteria
Cereibacter sphaeroides WS8N [AFER]
2161307
2161382
+
Ala
GGC
[ENA]
¡û
>W121076773
AKBU01000001
Alphaproteobacteria
Cereibacter sphaeroides 2.4.1 [AKBU]
574994
575069
+
Ala
GGC
[ENA]
¡û
>W121102130
AKVW01000001
Alphaproteobacteria
Cereibacter sphaeroides 2.4.1 [AKVW]
2741637
2741712
+
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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